Wall clock time and date at job start Tue Mar 31 2020 08:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00083 * 2 1 4 4 H 1.48502 * 109.46780 * 271.32827 * 3 2 1 5 5 H 1.48496 * 109.46962 * 31.32322 * 3 2 1 6 6 H 1.48499 * 109.47380 * 151.32254 * 3 2 1 7 7 C 1.38951 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00030 * 30.83588 * 7 2 1 9 9 N 1.37099 * 119.99962 * 210.83192 * 7 2 1 10 10 C 1.34768 * 120.00384 * 40.29045 * 9 7 2 11 11 O 1.21293 * 119.99778 * 359.97438 * 10 9 7 12 12 C 1.50691 * 120.00264 * 180.02562 * 10 9 7 13 13 C 1.50704 * 109.47308 * 179.97438 * 12 10 9 14 14 C 1.38254 * 120.00246 * 265.28859 * 13 12 10 15 15 C 1.38210 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.38259 * 120.00135 * 359.75184 * 15 14 13 17 17 C 1.38213 * 119.99898 * 0.52695 * 16 15 14 18 18 C 1.38213 * 119.99650 * 85.31358 * 13 12 10 19 19 N 1.48012 * 120.00157 * 359.97438 * 18 13 12 20 20 O 1.21804 * 120.00147 * 321.95627 * 19 18 13 21 21 O 1.21803 * 120.00176 * 141.96225 * 19 18 13 22 22 C 1.46506 * 119.99578 * 220.28782 * 9 7 2 23 23 C 1.53001 * 117.50019 * 12.11302 * 22 9 7 24 24 C 1.52994 * 117.50087 * 303.48978 * 22 9 7 25 25 H 0.97002 * 120.00382 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47615 * 59.99987 * 12 10 9 27 27 H 1.09001 * 109.47310 * 299.99580 * 12 10 9 28 28 H 1.07996 * 119.99967 * 359.97438 * 14 13 12 29 29 H 1.08006 * 119.99826 * 179.97438 * 15 14 13 30 30 H 1.08001 * 119.99762 * 180.27837 * 16 15 14 31 31 H 1.08001 * 120.00087 * 179.74483 * 17 16 15 32 32 H 1.09004 * 115.54782 * 157.81739 * 22 9 7 33 33 H 1.08996 * 117.49906 * 359.97438 * 23 22 9 34 34 H 1.08997 * 117.49450 * 145.01889 * 23 22 9 35 35 H 1.09002 * 117.50083 * 214.98364 * 24 22 9 36 36 H 1.08998 * 117.49940 * 359.97384 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4675 2.0626 -1.3997 5 1 1.4598 2.6444 0.7278 6 1 3.5594 1.4323 0.6718 7 6 2.0088 -1.2033 0.0005 8 1 1.5834 -2.0727 -0.4785 9 7 3.2345 -1.2869 0.6091 10 6 3.4475 -0.6623 1.7841 11 8 2.5549 -0.0257 2.3030 12 6 4.7949 -0.7537 2.4527 13 6 4.7701 0.0266 3.7418 14 6 5.2089 1.3375 3.7650 15 6 5.1856 2.0532 4.9471 16 6 4.7186 1.4599 6.1054 17 6 4.2853 0.1476 6.0834 18 6 4.3090 -0.5685 4.9009 19 7 3.8392 -1.9718 4.8761 20 8 3.2113 -2.3870 3.9185 21 8 4.0803 -2.7115 5.8133 22 6 4.3127 -2.0554 -0.0180 23 6 4.1118 -2.5011 -1.4678 24 6 4.0394 -3.5270 -0.3350 25 1 -0.4851 0.8400 -0.0004 26 1 5.5570 -0.3396 1.7925 27 1 5.0256 -1.7978 2.6641 28 1 5.5699 1.8021 2.8594 29 1 5.5288 3.0771 4.9653 30 1 4.6962 2.0206 7.0281 31 1 3.9244 -0.3171 6.9890 32 1 5.3229 -1.7862 0.2907 33 1 3.1773 -2.2230 -1.9549 34 1 4.9899 -2.5251 -2.1131 35 1 4.8698 -4.2260 -0.2352 36 1 3.0576 -3.9235 -0.0766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067686898.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:54 Heat of formation + Delta-G solvation = 43.143020 kcal Electronic energy + Delta-G solvation = -23852.194214 eV Core-core repulsion = 20306.961548 eV Total energy + Delta-G solvation = -3545.232666 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 11.09 seconds Orbital eigenvalues (eV) -41.89601 -39.65820 -38.66689 -36.40622 -36.06045 -33.23491 -32.61041 -31.81410 -31.37506 -28.29545 -26.10389 -24.61420 -22.65587 -22.05453 -21.69435 -21.23214 -19.48459 -18.76427 -18.24131 -17.31110 -16.90126 -16.23974 -16.03063 -15.44563 -15.06990 -14.74017 -14.37672 -13.78577 -13.68077 -13.35176 -13.02335 -12.74648 -12.55990 -12.28207 -11.75175 -11.48431 -11.36336 -11.18397 -11.01141 -10.86556 -10.70269 -10.58014 -10.37145 -10.29289 -9.87932 -9.70104 -9.49176 -9.18911 -8.67581 -8.28691 -7.41688 -6.25229 -3.83666 0.23368 0.98900 1.42909 1.74165 3.22962 3.30899 3.42949 3.45601 3.82593 4.27067 4.43511 4.49296 4.50990 4.64658 4.69247 4.94982 4.98216 5.14961 5.18922 5.40089 5.45713 5.50050 5.56544 5.66511 5.71889 5.78950 5.86278 6.04484 6.13724 6.22395 6.30834 6.36535 6.72088 6.74558 6.91408 7.84837 8.00279 8.04426 8.82899 9.00536 9.48237 9.91651 10.82655 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.007447 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.115427 B = 3758.768299 C = 4518.678734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.106 3.894 3 Si 0.908 3.092 4 H -0.298 1.298 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.428 5.428 10 C 0.492 3.508 11 O -0.544 6.544 12 C -0.117 4.117 13 C 0.013 3.987 14 C -0.108 4.108 15 C -0.075 4.075 16 C -0.124 4.124 17 C -0.062 4.062 18 C -0.022 4.022 19 N 0.019 4.981 20 O -0.110 6.110 21 O -0.183 6.183 22 C 0.059 3.941 23 C -0.176 4.176 24 C -0.193 4.193 25 H 0.271 0.729 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.078 2.360 7.005 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.105 4.105 3 Si 0.737 3.263 4 H -0.227 1.227 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.481 4.481 8 H 0.111 0.889 9 N -0.148 5.148 10 C 0.280 3.720 11 O -0.425 6.425 12 C -0.158 4.158 13 C 0.011 3.989 14 C -0.127 4.127 15 C -0.093 4.093 16 C -0.142 4.142 17 C -0.082 4.082 18 C -0.104 4.104 19 N 0.542 4.458 20 O -0.337 6.337 21 O -0.392 6.392 22 C -0.046 4.046 23 C -0.214 4.214 24 C -0.232 4.232 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.160 0.840 29 H 0.157 0.843 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.659 3.443 7.357 15.891 hybrid contribution 0.272 0.440 -0.039 0.519 sum 13.931 3.883 7.318 16.208 Atomic orbital electron populations 1.69907 1.07021 1.28112 1.42471 1.25148 0.94440 0.98849 0.92062 0.86320 0.81167 0.83452 0.75326 1.22669 1.21653 1.20081 1.18510 0.92312 0.97588 1.39707 0.88870 1.42985 1.10091 1.45376 1.16383 1.19224 0.87624 0.84162 0.80985 1.90492 1.44440 1.43427 1.64174 1.21000 1.00504 1.00801 0.93481 1.19330 0.92622 0.94416 0.92505 1.21092 1.00314 0.92108 0.99188 1.21474 0.95466 1.00140 0.92188 1.21074 1.00056 0.93680 0.99437 1.20871 0.96847 0.94546 0.95894 1.20841 1.09309 0.83270 0.97019 1.43639 0.98979 1.02931 1.00290 1.94724 1.35129 1.79024 1.24793 1.94476 1.61454 1.54276 1.28983 1.21793 0.91834 0.93912 0.97109 1.23171 1.03736 1.03322 0.91177 1.23242 1.03122 0.92662 1.04188 0.91901 0.88465 0.88687 0.84037 0.84308 0.83987 0.83848 0.87706 0.87027 0.89637 0.89624 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.72 13.96 55.50 0.77 -24.94 16 2 C 0.11 3.09 4.48 -17.47 -0.08 3.01 16 3 Si 0.91 23.62 26.06 -169.99 -4.43 19.19 16 4 H -0.30 -7.47 7.11 56.52 0.40 -7.06 16 5 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.28 -6.84 5.78 56.52 0.33 -6.52 16 7 C -0.36 -9.93 8.17 -14.93 -0.12 -10.06 16 8 H 0.09 2.72 7.58 -52.49 -0.40 2.32 16 9 N -0.43 -10.30 2.51 -107.73 -0.27 -10.58 16 10 C 0.49 11.74 3.85 -10.99 -0.04 11.70 16 11 O -0.54 -15.17 12.41 5.36 0.07 -15.10 16 12 C -0.12 -2.14 3.61 -29.04 -0.10 -2.25 16 13 C 0.01 0.22 4.37 -104.62 -0.46 -0.23 16 14 C -0.11 -1.52 9.68 -39.59 -0.38 -1.91 16 15 C -0.07 -0.83 10.05 -39.58 -0.40 -1.23 16 16 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 17 C -0.06 -0.86 9.67 -39.58 -0.38 -1.24 16 18 C -0.02 -0.39 6.47 -79.95 -0.52 -0.90 16 19 N 0.02 0.37 4.11 33.96 0.14 0.51 16 20 O -0.11 -2.49 15.45 -30.76 -0.48 -2.97 16 21 O -0.18 -3.43 18.96 -29.46 -0.56 -3.99 16 22 C 0.06 1.12 6.06 -67.93 -0.41 0.71 16 23 C -0.18 -3.01 9.81 -26.73 -0.26 -3.28 16 24 C -0.19 -3.30 10.16 -26.74 -0.27 -3.57 16 25 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 26 H 0.10 1.46 7.50 -51.93 -0.39 1.07 16 27 H 0.09 1.67 6.85 -51.93 -0.36 1.31 16 28 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.14 1.71 8.02 -52.49 -0.42 1.29 16 32 H 0.11 1.64 6.71 -51.93 -0.35 1.29 16 33 H 0.11 2.18 6.93 -51.93 -0.36 1.82 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -35.09 310.38 -7.92 -43.01 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.02 Total: 1.18 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -3.83 Total: -10.99 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.64 Total: -35.01 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.97 Total: -22.05 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.43 Total: 19.19 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.09 -7.92 -43.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686898.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.154 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.09 seconds