Wall clock time and date at job start Tue Mar 31 2020 08:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86803 * 120.00083 * 2 1 4 4 H 1.48502 * 109.46780 * 271.32827 * 3 2 1 5 5 H 1.48496 * 109.46962 * 31.32322 * 3 2 1 6 6 H 1.48499 * 109.47380 * 151.32254 * 3 2 1 7 7 C 1.38951 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00030 * 30.83588 * 7 2 1 9 9 N 1.37099 * 119.99962 * 210.83192 * 7 2 1 10 10 C 1.34768 * 120.00384 * 40.29045 * 9 7 2 11 11 O 1.21293 * 119.99778 * 359.97438 * 10 9 7 12 12 C 1.50691 * 120.00264 * 180.02562 * 10 9 7 13 13 C 1.50704 * 109.47308 * 179.97438 * 12 10 9 14 14 C 1.38254 * 120.00246 * 265.28859 * 13 12 10 15 15 C 1.38210 * 119.99926 * 179.97438 * 14 13 12 16 16 C 1.38259 * 120.00135 * 359.75184 * 15 14 13 17 17 C 1.38213 * 119.99898 * 0.52695 * 16 15 14 18 18 C 1.38213 * 119.99650 * 85.31358 * 13 12 10 19 19 N 1.48012 * 120.00157 * 359.97438 * 18 13 12 20 20 O 1.21804 * 120.00147 * 321.95627 * 19 18 13 21 21 O 1.21803 * 120.00176 * 141.96225 * 19 18 13 22 22 C 1.46506 * 119.99578 * 220.28782 * 9 7 2 23 23 C 1.53001 * 117.50019 * 12.11302 * 22 9 7 24 24 C 1.52994 * 117.50087 * 303.48978 * 22 9 7 25 25 H 0.97002 * 120.00382 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47615 * 59.99987 * 12 10 9 27 27 H 1.09001 * 109.47310 * 299.99580 * 12 10 9 28 28 H 1.07996 * 119.99967 * 359.97438 * 14 13 12 29 29 H 1.08006 * 119.99826 * 179.97438 * 15 14 13 30 30 H 1.08001 * 119.99762 * 180.27837 * 16 15 14 31 31 H 1.08001 * 120.00087 * 179.74483 * 17 16 15 32 32 H 1.09004 * 115.54782 * 157.81739 * 22 9 7 33 33 H 1.08996 * 117.49906 * 359.97438 * 23 22 9 34 34 H 1.08997 * 117.49450 * 145.01889 * 23 22 9 35 35 H 1.09002 * 117.50083 * 214.98364 * 24 22 9 36 36 H 1.08998 * 117.49940 * 359.97384 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4675 2.0626 -1.3997 5 1 1.4598 2.6444 0.7278 6 1 3.5594 1.4323 0.6718 7 6 2.0088 -1.2033 0.0005 8 1 1.5834 -2.0727 -0.4785 9 7 3.2345 -1.2869 0.6091 10 6 3.4475 -0.6623 1.7841 11 8 2.5549 -0.0257 2.3030 12 6 4.7949 -0.7537 2.4527 13 6 4.7701 0.0266 3.7418 14 6 5.2089 1.3375 3.7650 15 6 5.1856 2.0532 4.9471 16 6 4.7186 1.4599 6.1054 17 6 4.2853 0.1476 6.0834 18 6 4.3090 -0.5685 4.9009 19 7 3.8392 -1.9718 4.8761 20 8 3.2113 -2.3870 3.9185 21 8 4.0803 -2.7115 5.8133 22 6 4.3127 -2.0554 -0.0180 23 6 4.1118 -2.5011 -1.4678 24 6 4.0394 -3.5270 -0.3350 25 1 -0.4851 0.8400 -0.0004 26 1 5.5570 -0.3396 1.7925 27 1 5.0256 -1.7978 2.6641 28 1 5.5699 1.8021 2.8594 29 1 5.5288 3.0771 4.9653 30 1 4.6962 2.0206 7.0281 31 1 3.9244 -0.3171 6.9890 32 1 5.3229 -1.7862 0.2907 33 1 3.1773 -2.2230 -1.9549 34 1 4.9899 -2.5251 -2.1131 35 1 4.8698 -4.2260 -0.2352 36 1 3.0576 -3.9235 -0.0766 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067686898.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:45 Heat of formation + Delta-G solvation = 20.472613 kcal Electronic energy + Delta-G solvation = -23853.177277 eV Core-core repulsion = 20306.961548 eV Total energy + Delta-G solvation = -3546.215729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 3.25 seconds Orbital eigenvalues (eV) -43.30404 -41.10563 -40.08271 -37.99679 -37.58656 -34.99683 -34.10606 -33.30235 -32.88900 -29.68821 -27.50573 -26.40774 -23.83234 -23.45464 -23.06096 -22.71451 -21.26825 -20.08889 -19.65339 -18.82209 -18.58281 -17.81307 -17.35286 -17.05995 -16.52952 -16.01334 -15.68506 -15.40365 -15.25474 -14.89322 -14.62822 -14.29933 -13.95885 -13.55459 -13.19235 -13.12057 -12.86968 -12.70872 -12.54967 -12.39639 -12.25675 -12.21170 -12.15172 -12.01604 -11.60915 -11.27673 -10.77795 -10.52009 -10.39870 -10.03113 -9.32398 -8.45947 -6.03186 -1.07662 -0.01911 0.15453 0.45302 1.23066 1.28849 1.38217 2.00614 2.26682 2.44825 2.67243 2.98770 3.23930 3.32221 3.39842 3.76391 3.89081 3.98769 4.04688 4.06687 4.11421 4.18650 4.27742 4.35773 4.37430 4.65352 4.87367 4.89672 4.98545 5.04451 5.13412 5.19530 5.25271 5.48674 5.58483 5.71338 5.91357 6.47084 6.80888 6.99162 7.42979 7.99569 8.66393 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.007447 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.115427 B = 3758.768299 C = 4518.678734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.052 3.948 3 Si 0.964 3.036 4 H -0.283 1.283 5 H -0.305 1.305 6 H -0.256 1.256 7 C -0.351 4.351 8 H 0.058 0.942 9 N -0.447 5.447 10 C 0.488 3.512 11 O -0.591 6.591 12 C -0.106 4.106 13 C -0.019 4.019 14 C -0.118 4.118 15 C -0.058 4.058 16 C -0.107 4.107 17 C -0.071 4.071 18 C -0.054 4.054 19 N 0.025 4.975 20 O -0.206 6.206 21 O -0.143 6.143 22 C 0.039 3.961 23 C -0.165 4.165 24 C -0.187 4.187 25 H 0.271 0.729 26 H 0.134 0.866 27 H 0.095 0.905 28 H 0.159 0.841 29 H 0.186 0.814 30 H 0.189 0.811 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.338 4.605 8.644 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.153 4.153 3 Si 0.791 3.209 4 H -0.211 1.211 5 H -0.232 1.232 6 H -0.180 1.180 7 C -0.478 4.478 8 H 0.076 0.924 9 N -0.167 5.167 10 C 0.279 3.721 11 O -0.475 6.475 12 C -0.146 4.146 13 C -0.021 4.021 14 C -0.137 4.137 15 C -0.076 4.076 16 C -0.125 4.125 17 C -0.090 4.090 18 C -0.136 4.136 19 N 0.542 4.458 20 O -0.411 6.411 21 O -0.369 6.369 22 C -0.066 4.066 23 C -0.203 4.203 24 C -0.225 4.225 25 H 0.080 0.920 26 H 0.152 0.848 27 H 0.114 0.886 28 H 0.177 0.823 29 H 0.203 0.797 30 H 0.207 0.793 31 H 0.176 0.824 32 H 0.166 0.834 33 H 0.096 0.904 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.880 5.661 8.801 20.717 hybrid contribution -0.956 -0.317 -0.270 1.043 sum 16.923 5.344 8.531 19.691 Atomic orbital electron populations 1.70016 1.08647 1.28671 1.45949 1.25907 0.95004 1.02228 0.92189 0.85430 0.80484 0.79078 0.75864 1.21061 1.23197 1.17967 1.18347 0.94337 0.96257 1.38818 0.92415 1.43149 1.10187 1.46221 1.17133 1.20169 0.89425 0.82232 0.80313 1.90446 1.46633 1.45344 1.65084 1.20857 0.97347 1.01778 0.94595 1.19457 0.95052 0.95889 0.91673 1.21477 1.00016 0.90834 1.01328 1.22074 0.92941 1.01747 0.90813 1.21686 0.97208 0.92235 1.01340 1.21310 0.96868 0.95773 0.95074 1.21201 1.11568 0.81798 0.99018 1.44085 0.98037 1.04154 0.99521 1.94746 1.39392 1.80487 1.26461 1.94400 1.59100 1.55202 1.28179 1.22229 0.91968 0.94133 0.98238 1.23199 1.03968 1.02253 0.90838 1.23244 1.02740 0.92667 1.03884 0.92032 0.84842 0.88631 0.82330 0.79688 0.79348 0.82439 0.83407 0.90444 0.85089 0.85471 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.17 13.96 21.66 0.30 -57.87 16 2 C 0.05 3.19 4.48 84.93 0.38 3.57 16 3 Si 0.96 49.59 26.06 68.60 1.79 51.38 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.30 -16.23 7.11 99.48 0.71 -15.52 16 6 H -0.26 -12.10 5.78 99.48 0.58 -11.52 16 7 C -0.35 -20.69 8.17 84.04 0.69 -20.00 16 8 H 0.06 3.68 7.58 -2.91 -0.02 3.66 16 9 N -0.45 -21.93 2.51 -613.14 -1.54 -23.47 16 10 C 0.49 23.50 3.85 87.66 0.34 23.84 16 11 O -0.59 -33.78 12.41 -2.90 -0.04 -33.82 16 12 C -0.11 -3.72 3.61 29.10 0.11 -3.61 16 13 C -0.02 -0.61 4.37 -19.87 -0.09 -0.70 16 14 C -0.12 -2.84 9.68 22.27 0.22 -2.63 16 15 C -0.06 -0.96 10.05 22.27 0.22 -0.74 16 16 C -0.11 -1.75 10.05 22.27 0.22 -1.52 16 17 C -0.07 -1.74 9.67 22.27 0.22 -1.53 16 18 C -0.05 -1.80 6.47 36.38 0.24 -1.57 16 19 N 0.02 0.99 4.11 -46.47 -0.19 0.80 16 20 O -0.21 -9.89 15.45 20.12 0.31 -9.58 16 21 O -0.14 -5.31 18.96 18.88 0.36 -4.96 16 22 C 0.04 1.41 6.06 44.99 0.27 1.69 16 23 C -0.17 -5.47 9.81 30.59 0.30 -5.17 16 24 C -0.19 -6.30 10.16 30.59 0.31 -5.99 16 25 H 0.27 16.51 8.31 -92.71 -0.77 15.74 16 26 H 0.13 3.55 7.50 -2.39 -0.02 3.53 16 27 H 0.10 3.32 6.85 -2.39 -0.02 3.30 16 28 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.16 3.28 8.02 -2.91 -0.02 3.26 16 32 H 0.15 4.09 6.71 -2.38 -0.02 4.07 16 33 H 0.08 3.13 6.93 -2.39 -0.02 3.11 16 34 H 0.13 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.13 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -85.82 310.38 5.39 -80.43 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.98 Total: 11.45 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 3.42 Total: -14.37 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -1.43 Total: -80.54 kcal Atomic # 8 Polarization: -48.99 SS G_CDS: 0.63 Total: -48.36 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 1.79 Total: 51.38 kcal Total: -85.82 5.39 -80.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067686898.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.901 kcal (2) G-P(sol) polarization free energy of solvation -85.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.25 seconds