Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00542 * 2 1 4 4 H 1.48500 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46779 * 300.00289 * 3 2 1 6 6 H 1.48502 * 109.46800 * 59.99912 * 3 2 1 7 7 C 1.38803 * 119.99529 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99609 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00095 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47481 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.47553 * 179.97438 * 12 11 10 14 14 N 1.28733 * 125.33912 * 89.97552 * 13 12 11 15 15 N 1.28984 * 108.94425 * 180.02562 * 14 13 12 16 16 C 1.34049 * 107.26777 * 0.02562 * 15 14 13 17 17 C 1.48467 * 126.67288 * 179.97438 * 16 15 14 18 18 C 1.39294 * 120.11716 * 179.75263 * 17 16 15 19 19 C 1.38030 * 119.88324 * 179.77152 * 18 17 16 20 20 C 1.38314 * 120.11405 * 0.47699 * 19 18 17 21 21 C 1.38316 * 120.23707 * 359.79547 * 20 19 18 22 22 C 1.38025 * 120.12033 * 359.95400 * 21 20 19 23 23 N 1.28876 * 125.34499 * 269.98060 * 13 12 11 24 24 H 0.97006 * 119.99886 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46734 * 60.00121 * 10 9 7 26 26 H 1.08999 * 109.47081 * 300.00601 * 10 9 7 27 27 H 1.09003 * 109.47026 * 60.00380 * 11 10 9 28 28 H 1.08999 * 109.47573 * 300.00380 * 11 10 9 29 29 H 1.09008 * 109.46999 * 60.00084 * 12 11 10 30 30 H 1.08993 * 109.47429 * 300.00436 * 12 11 10 31 31 H 1.08004 * 120.05618 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.94482 * 180.27510 * 19 18 17 33 33 H 1.07999 * 119.87839 * 179.76814 * 20 19 18 34 34 H 1.08007 * 119.93915 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.06518 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9791 -5.3243 0.0001 12 6 3.1510 -6.3078 -0.0005 13 7 2.6373 -7.6798 0.0007 14 7 2.3747 -8.3775 -1.0488 15 7 1.9407 -9.5360 -0.6837 16 6 1.9346 -9.5542 0.6567 17 6 1.5122 -10.6811 1.5261 18 6 1.5666 -10.5529 2.9121 19 6 1.1682 -11.6020 3.7159 20 6 0.7250 -12.7824 3.1474 21 6 0.6743 -12.9170 1.7717 22 6 1.0654 -11.8724 0.9587 23 7 2.3772 -8.3775 1.0525 24 1 -0.4850 0.8401 -0.0004 25 1 3.1242 -3.7314 0.8895 26 1 3.1243 -3.7314 -0.8905 27 1 1.3702 -5.4847 -0.8897 28 1 1.3707 -5.4841 0.8902 29 1 3.7603 -6.1476 0.8891 30 1 3.7590 -6.1480 -0.8909 31 1 1.9159 -9.6329 3.3570 32 1 1.2058 -11.5021 4.7907 33 1 0.4177 -13.6021 3.7799 34 1 0.3278 -13.8410 1.3329 35 1 1.0251 -11.9783 -0.1153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075075252.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = 137.279674 kcal Electronic energy + Delta-G solvation = -18718.205413 eV Core-core repulsion = 15652.100441 eV Total energy + Delta-G solvation = -3066.104972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 7.45 seconds Orbital eigenvalues (eV) -44.31306 -39.32164 -36.22415 -33.60137 -33.18108 -32.51284 -31.22688 -30.66121 -27.45749 -25.65193 -24.59279 -23.66371 -22.39120 -21.69507 -21.45370 -18.09877 -17.63889 -17.12012 -16.92354 -15.95451 -15.24695 -15.08195 -14.88261 -14.40543 -14.14587 -13.77956 -13.67406 -13.55946 -13.12089 -12.79403 -12.40358 -12.13636 -11.91137 -11.62365 -11.41582 -11.15491 -11.08025 -11.01386 -10.94388 -10.90696 -10.79924 -10.62533 -9.71929 -9.23895 -9.15246 -8.84036 -8.44879 -6.65561 -6.31564 -4.03796 0.59041 1.11715 1.25925 1.85423 2.32164 3.14492 3.16035 3.24875 3.40868 3.59077 3.61264 4.10191 4.12499 4.59024 4.68061 4.78826 4.81738 4.84672 5.02075 5.05115 5.11987 5.20130 5.28232 5.31768 5.46609 5.55919 5.60261 5.73894 5.76147 5.97419 6.08408 6.18856 6.20176 6.21689 6.24904 6.43733 6.62464 7.52318 8.27735 8.29675 9.14896 10.76620 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.035962 B = 0.002419 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.409123 B =11570.025014 C =11905.584329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.071 3.929 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.519 4.519 8 H 0.075 0.925 9 S -0.123 6.123 10 C -0.114 4.114 11 C -0.114 4.114 12 C 0.128 3.872 13 N -0.125 5.125 14 N -0.056 5.056 15 N -0.281 5.281 16 C 0.199 3.801 17 C -0.008 4.008 18 C -0.082 4.082 19 C -0.123 4.123 20 C -0.106 4.106 21 C -0.123 4.123 22 C -0.080 4.080 23 N -0.296 5.296 24 H 0.268 0.732 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -22.652 5.022 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.747 3.253 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.667 4.667 8 H 0.093 0.907 9 S 0.105 5.895 10 C -0.263 4.263 11 C -0.154 4.154 12 C 0.007 3.993 13 N -0.038 5.038 14 N -0.049 5.049 15 N -0.152 5.152 16 C -0.081 4.081 17 C -0.011 4.011 18 C -0.102 4.102 19 C -0.141 4.141 20 C -0.125 4.125 21 C -0.141 4.141 22 C -0.100 4.100 23 N -0.146 5.146 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.469 -22.297 4.410 22.992 hybrid contribution 1.745 1.218 0.400 2.165 sum 5.214 -21.079 4.810 22.241 Atomic orbital electron populations 1.70024 1.05969 1.27424 1.46949 1.25036 0.95110 0.99220 0.94447 0.86078 0.79600 0.81674 0.77958 1.19551 1.20509 1.20515 1.22715 0.94588 0.90511 1.58889 0.90685 1.84783 1.08440 0.99351 1.96898 1.23168 1.03778 0.95694 1.03671 1.21702 0.96106 0.92821 1.04723 1.22662 0.98430 0.71283 1.06880 1.50300 1.38496 1.14596 1.00371 1.78934 1.13005 0.98472 1.14494 1.75993 1.17552 1.11200 1.10450 1.23601 1.01905 0.92720 0.89840 1.17291 1.02464 0.90159 0.91200 1.21240 0.97649 0.99514 0.91846 1.21108 0.99676 0.93206 1.00098 1.21324 0.98325 0.97673 0.95165 1.21102 1.00556 0.98858 0.93612 1.21217 0.96386 0.91529 1.00897 1.74882 1.19574 1.04799 1.15369 0.92216 0.91325 0.91265 0.90045 0.90086 0.86457 0.86224 0.84874 0.85320 0.85671 0.85320 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.43 13.22 55.49 0.73 -24.70 16 2 C 0.07 1.97 5.49 -17.43 -0.10 1.87 16 3 Si 0.92 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.30 9.50 30.94 0.29 -14.01 16 8 H 0.08 1.98 7.80 -52.48 -0.41 1.58 16 9 S -0.12 -3.07 21.44 -107.50 -2.30 -5.38 16 10 C -0.11 -2.04 5.67 37.16 0.21 -1.83 16 11 C -0.11 -1.67 5.54 -26.74 -0.15 -1.82 16 12 C 0.13 1.48 6.60 -4.05 -0.03 1.46 16 13 N -0.13 -1.76 3.99 -10.64 -0.04 -1.80 16 14 N -0.06 -0.87 13.23 60.35 0.80 -0.07 16 15 N -0.28 -4.31 12.23 32.16 0.39 -3.91 16 16 C 0.20 2.83 7.94 -156.30 -1.24 1.59 16 17 C -0.01 -0.09 5.88 -104.89 -0.62 -0.71 16 18 C -0.08 -0.83 9.70 -39.27 -0.38 -1.21 16 19 C -0.12 -0.98 10.03 -39.63 -0.40 -1.38 16 20 C -0.11 -0.76 10.04 -39.52 -0.40 -1.16 16 21 C -0.12 -0.96 10.03 -39.63 -0.40 -1.35 16 22 C -0.08 -0.80 9.70 -39.26 -0.38 -1.18 16 23 N -0.30 -4.27 11.85 32.17 0.38 -3.89 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.07 1.17 8.14 -51.91 -0.42 0.75 16 26 H 0.07 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.12 1.14 8.14 -51.92 -0.42 0.71 16 30 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.13 1.31 7.88 -52.48 -0.41 0.90 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.13 1.29 7.89 -52.49 -0.41 0.88 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -32.36 327.88 -7.88 -40.23 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -4.18 Total: -1.65 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -3.58 Total: -19.73 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 2.26 Total: -34.37 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.30 Total: -5.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.36 -7.88 -40.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075252.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.514 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.45 seconds