Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00542 * 2 1 4 4 H 1.48500 * 109.47281 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46779 * 300.00289 * 3 2 1 6 6 H 1.48502 * 109.46800 * 59.99912 * 3 2 1 7 7 C 1.38803 * 119.99529 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99609 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00095 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47481 * 179.97438 * 11 10 9 13 13 N 1.46495 * 109.47553 * 179.97438 * 12 11 10 14 14 N 1.28733 * 125.33912 * 89.97552 * 13 12 11 15 15 N 1.28984 * 108.94425 * 180.02562 * 14 13 12 16 16 C 1.34049 * 107.26777 * 0.02562 * 15 14 13 17 17 C 1.48467 * 126.67288 * 179.97438 * 16 15 14 18 18 C 1.39294 * 120.11716 * 179.75263 * 17 16 15 19 19 C 1.38030 * 119.88324 * 179.77152 * 18 17 16 20 20 C 1.38314 * 120.11405 * 0.47699 * 19 18 17 21 21 C 1.38316 * 120.23707 * 359.79547 * 20 19 18 22 22 C 1.38025 * 120.12033 * 359.95400 * 21 20 19 23 23 N 1.28876 * 125.34499 * 269.98060 * 13 12 11 24 24 H 0.97006 * 119.99886 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46734 * 60.00121 * 10 9 7 26 26 H 1.08999 * 109.47081 * 300.00601 * 10 9 7 27 27 H 1.09003 * 109.47026 * 60.00380 * 11 10 9 28 28 H 1.08999 * 109.47573 * 300.00380 * 11 10 9 29 29 H 1.09008 * 109.46999 * 60.00084 * 12 11 10 30 30 H 1.08993 * 109.47429 * 300.00436 * 12 11 10 31 31 H 1.08004 * 120.05618 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.94482 * 180.27510 * 19 18 17 33 33 H 1.07999 * 119.87839 * 179.76814 * 20 19 18 34 34 H 1.08007 * 119.93915 * 179.97438 * 21 20 19 35 35 H 1.08001 * 120.06518 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9791 -5.3243 0.0001 12 6 3.1510 -6.3078 -0.0005 13 7 2.6373 -7.6798 0.0007 14 7 2.3747 -8.3775 -1.0488 15 7 1.9407 -9.5360 -0.6837 16 6 1.9346 -9.5542 0.6567 17 6 1.5122 -10.6811 1.5261 18 6 1.5666 -10.5529 2.9121 19 6 1.1682 -11.6020 3.7159 20 6 0.7250 -12.7824 3.1474 21 6 0.6743 -12.9170 1.7717 22 6 1.0654 -11.8724 0.9587 23 7 2.3772 -8.3775 1.0525 24 1 -0.4850 0.8401 -0.0004 25 1 3.1242 -3.7314 0.8895 26 1 3.1243 -3.7314 -0.8905 27 1 1.3702 -5.4847 -0.8897 28 1 1.3707 -5.4841 0.8902 29 1 3.7603 -6.1476 0.8891 30 1 3.7590 -6.1480 -0.8909 31 1 1.9159 -9.6329 3.3570 32 1 1.2058 -11.5021 4.7907 33 1 0.4177 -13.6021 3.7799 34 1 0.3278 -13.8410 1.3329 35 1 1.0251 -11.9783 -0.1153 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075075252.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = 118.336614 kcal Electronic energy + Delta-G solvation = -18719.026845 eV Core-core repulsion = 15652.100441 eV Total energy + Delta-G solvation = -3066.926405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.39746 -40.00120 -37.33489 -34.66778 -34.61317 -34.27928 -31.89533 -31.52706 -28.66999 -27.69540 -25.51868 -24.73955 -23.34679 -22.53456 -22.49852 -19.65386 -18.96836 -18.26154 -17.84416 -16.90384 -16.72408 -16.38764 -16.06269 -15.83086 -15.05559 -15.02103 -14.69524 -14.32318 -14.20891 -13.91262 -13.79111 -13.47012 -13.20861 -12.94747 -12.82853 -12.60059 -12.34256 -12.21891 -12.17880 -12.05112 -11.87843 -11.85074 -11.39472 -11.16888 -10.35270 -9.89982 -9.62143 -8.70076 -8.38743 -6.15691 -0.24030 0.17289 0.46020 0.83133 1.32642 1.37259 1.39005 1.50441 1.71736 2.26151 2.65903 2.89761 2.96666 3.12394 3.26439 3.68234 3.72302 3.92624 4.05723 4.06777 4.15177 4.24707 4.25966 4.37963 4.55395 4.57714 4.63119 4.67388 4.88188 4.94845 5.01351 5.11921 5.13391 5.40437 5.51331 5.51984 5.57292 6.00171 6.17802 7.04278 7.19427 8.70876 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.035962 B = 0.002419 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.409123 B =11570.025014 C =11905.584329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.012 3.988 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.532 4.532 8 H 0.080 0.920 9 S -0.203 6.203 10 C -0.086 4.086 11 C -0.100 4.100 12 C 0.131 3.869 13 N -0.123 5.123 14 N -0.071 5.071 15 N -0.300 5.300 16 C 0.199 3.801 17 C -0.040 4.040 18 C -0.094 4.094 19 C -0.123 4.123 20 C -0.097 4.097 21 C -0.121 4.121 22 C -0.091 4.091 23 N -0.307 5.307 24 H 0.271 0.729 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.143 0.857 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.154 0.846 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 -23.895 6.075 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.818 3.182 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.680 4.680 8 H 0.099 0.901 9 S 0.026 5.974 10 C -0.235 4.235 11 C -0.141 4.141 12 C 0.012 3.988 13 N -0.036 5.036 14 N -0.064 5.064 15 N -0.170 5.170 16 C -0.081 4.081 17 C -0.043 4.043 18 C -0.114 4.114 19 C -0.141 4.141 20 C -0.116 4.116 21 C -0.139 4.139 22 C -0.111 4.111 23 N -0.158 5.158 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.161 0.839 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.838 -23.554 5.458 24.658 hybrid contribution 1.296 1.430 0.128 1.934 sum 6.134 -22.124 5.586 23.628 Atomic orbital electron populations 1.70169 1.07809 1.28486 1.48168 1.26101 0.96008 1.03287 0.93844 0.84940 0.78618 0.76579 0.78083 1.18211 1.19991 1.19931 1.23077 0.94941 0.91459 1.58548 0.90144 1.84865 1.13868 1.01566 1.97117 1.23030 1.00656 0.94891 1.04936 1.21472 0.97095 0.91902 1.03582 1.22758 0.96968 0.69541 1.09556 1.50441 1.38187 1.14958 1.00064 1.78870 1.13583 0.98855 1.15094 1.75958 1.18374 1.11455 1.11257 1.24136 1.00938 0.93239 0.89757 1.17511 1.04770 0.90297 0.91722 1.21333 0.98317 1.00289 0.91456 1.21443 0.98682 0.92754 1.01206 1.21759 0.96453 0.98103 0.95278 1.21450 0.99478 0.99044 0.93940 1.21331 0.96884 0.91773 1.01149 1.74874 1.20290 1.05135 1.15519 0.92041 0.89938 0.89900 0.91292 0.91307 0.83911 0.83622 0.85366 0.82868 0.82363 0.82638 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.29 13.22 21.65 0.29 -54.00 16 2 C 0.01 0.68 5.49 84.86 0.47 1.15 16 3 Si 1.00 42.81 29.55 68.60 2.03 44.84 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.53 -29.45 9.50 67.96 0.65 -28.81 16 8 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 9 S -0.20 -10.35 21.44 -56.49 -1.21 -11.56 16 10 C -0.09 -2.98 5.67 71.98 0.41 -2.57 16 11 C -0.10 -2.90 5.54 30.59 0.17 -2.73 16 12 C 0.13 2.82 6.60 86.38 0.57 3.39 16 13 N -0.12 -3.39 3.99 -187.57 -0.75 -4.14 16 14 N -0.07 -2.19 13.23 37.02 0.49 -1.70 16 15 N -0.30 -9.35 12.23 -52.18 -0.64 -9.99 16 16 C 0.20 5.73 7.94 137.38 1.09 6.82 16 17 C -0.04 -0.93 5.88 -20.04 -0.12 -1.05 16 18 C -0.09 -1.84 9.70 22.47 0.22 -1.62 16 19 C -0.12 -1.68 10.03 22.24 0.22 -1.46 16 20 C -0.10 -1.09 10.04 22.31 0.22 -0.86 16 21 C -0.12 -1.60 10.03 22.24 0.22 -1.38 16 22 C -0.09 -1.77 9.70 22.48 0.22 -1.55 16 23 N -0.31 -8.86 11.85 -52.13 -0.62 -9.48 16 24 H 0.27 15.00 8.31 -92.70 -0.77 14.23 16 25 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.08 2.69 8.14 -2.40 -0.02 2.67 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.14 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.13 2.53 7.88 -2.91 -0.02 2.51 16 32 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 35 H 0.13 2.53 7.89 -2.91 -0.02 2.51 16 Total: -1.00 -72.08 327.88 5.02 -67.06 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 1.09 Total: 9.64 kcal Atomic # 6 Polarization: -35.02 SS G_CDS: 4.34 Total: -30.68 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -1.23 Total: -79.31 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -10.35 SS G_CDS: -1.21 Total: -11.56 kcal Total: -72.08 5.02 -67.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075075252.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.397 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds