Wall clock time and date at job start Tue Mar 31 2020 08:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46621 * 2 1 4 4 C 1.36574 * 127.17215 * 274.51462 * 3 2 1 5 5 S 1.76191 * 126.38263 * 359.97438 * 4 3 2 6 6 C 1.81002 * 100.00134 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47370 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00028 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00323 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99477 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00419 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46984 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47294 * 120.00021 * 11 9 7 14 14 H 1.48496 * 109.47592 * 240.00330 * 11 9 7 15 15 N 1.31446 * 107.23031 * 180.02562 * 4 3 2 16 16 N 1.28513 * 110.08097 * 0.02562 * 15 4 3 17 17 C 1.31258 * 109.96195 * 0.02562 * 16 15 4 18 18 C 1.47841 * 126.46452 * 179.73836 * 17 16 15 19 19 C 1.40007 * 120.56169 * 161.07735 * 18 17 16 20 20 C 1.38349 * 118.29182 * 179.97438 * 19 18 17 21 21 C 1.38356 * 119.30577 * 359.97438 * 20 19 18 22 22 N 1.31911 * 121.08423 * 0.02562 * 21 20 19 23 23 C 1.31704 * 121.87088 * 359.72555 * 22 21 20 24 24 H 1.08997 * 109.47176 * 60.00391 * 1 2 3 25 25 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47015 * 299.99813 * 1 2 3 27 27 H 1.08997 * 109.47015 * 240.00186 * 2 1 3 28 28 H 1.08997 * 109.47176 * 119.99609 * 2 1 3 29 29 H 1.09002 * 109.46777 * 299.99981 * 6 5 4 30 30 H 1.08997 * 109.46996 * 59.99741 * 6 5 4 31 31 H 0.97000 * 119.99419 * 179.97438 * 10 9 7 32 32 H 1.08000 * 120.85105 * 359.97438 * 19 18 17 33 33 H 1.08002 * 120.34580 * 180.02562 * 20 19 18 34 34 H 1.07999 * 119.45756 * 179.97438 * 21 20 19 35 35 H 1.08007 * 119.71754 * 180.27257 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2125 2.1878 -1.0849 5 16 1.9215 1.7617 -2.7695 6 6 2.4021 3.3106 -3.5732 7 6 2.2301 3.1774 -5.0643 8 1 1.8669 2.2516 -5.4854 9 6 2.5354 4.2378 -5.8910 10 7 2.9773 5.3654 -5.3781 11 14 2.3228 4.0724 -7.7395 12 1 1.8159 2.7139 -8.0598 13 1 1.3517 5.0883 -8.2189 14 1 3.6313 4.2836 -8.4091 15 7 2.6581 3.3409 -0.6380 16 7 2.7553 3.3098 0.6431 17 6 2.3786 2.1356 1.0927 18 6 2.3512 1.7036 2.5063 19 6 1.5795 0.6036 2.8997 20 6 1.5888 0.2398 4.2344 21 6 2.3533 0.9671 5.1293 22 7 3.0709 1.9994 4.7301 23 6 3.0986 2.3815 3.4700 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7723 4.1210 -3.2061 30 1 3.4453 3.5296 -3.3455 31 1 3.1924 6.1112 -5.9598 32 1 0.9921 0.0533 2.1796 33 1 1.0059 -0.6037 4.5742 34 1 2.3620 0.6855 6.1719 35 1 3.7020 3.2293 3.1808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075322477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:11 Heat of formation + Delta-G solvation = 107.921470 kcal Electronic energy + Delta-G solvation = -19723.970046 eV Core-core repulsion = 16656.592006 eV Total energy + Delta-G solvation = -3067.378039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.59205 -40.17966 -35.94466 -33.23750 -33.23399 -32.20346 -30.68253 -29.45643 -28.54258 -24.86080 -24.15320 -23.69059 -23.15250 -21.88230 -20.89007 -17.90889 -17.39171 -16.69768 -16.39549 -16.16087 -15.97207 -15.43005 -14.78117 -14.65236 -14.12039 -14.09416 -13.32800 -13.13303 -13.02912 -12.55726 -12.45732 -12.41604 -12.28472 -11.67487 -11.31826 -10.98470 -10.86761 -10.63487 -10.58995 -10.20645 -10.12086 -9.93936 -9.79560 -9.68396 -9.30360 -8.92654 -8.61445 -6.94841 -6.23790 -4.32692 0.47011 0.92024 1.68984 2.03341 2.67747 3.06325 3.21659 3.28056 3.29944 3.40370 3.62022 3.95524 4.29305 4.30998 4.33199 4.45291 4.54280 4.66864 4.70139 4.91212 5.07503 5.12595 5.26577 5.32049 5.36268 5.55594 5.66627 5.70444 5.89042 6.03027 6.16004 6.34340 6.81451 7.06093 7.17437 7.63197 7.67055 7.87901 8.68146 8.88695 9.31259 10.86496 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.036221 B = 0.003480 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.841438 B = 8044.927577 C = 8718.727990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 N -0.464 5.464 4 C 0.189 3.811 5 S -0.049 6.049 6 C 0.078 3.922 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.071 3.929 10 N -0.880 5.880 11 Si 0.908 3.092 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.280 1.280 15 N -0.285 5.285 16 N -0.261 5.261 17 C 0.190 3.810 18 C -0.047 4.047 19 C -0.082 4.082 20 C -0.168 4.168 21 C 0.100 3.900 22 N -0.478 5.478 23 C 0.140 3.860 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.268 0.732 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.159 0.841 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 -14.170 16.563 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 N -0.160 5.160 4 C -0.183 4.183 5 S 0.181 5.819 6 C -0.070 4.070 7 C -0.568 4.568 8 H 0.086 0.914 9 C -0.135 4.135 10 N -0.516 5.516 11 Si 0.735 3.265 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.206 1.206 15 N -0.130 5.130 16 N -0.103 5.103 17 C -0.077 4.077 18 C -0.052 4.052 19 C -0.109 4.109 20 C -0.188 4.188 21 C -0.058 4.058 22 N -0.186 5.186 23 C -0.019 4.019 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.176 0.824 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.996 -13.104 16.592 21.517 hybrid contribution -0.648 -0.648 -1.048 1.392 sum -4.644 -13.752 15.543 21.267 Atomic orbital electron populations 1.22253 0.93471 1.03636 1.04062 1.22102 0.96234 0.79197 1.05264 1.46539 1.50868 1.13424 1.05138 1.27540 1.03205 0.90597 0.96977 1.85460 1.82119 1.29270 0.85058 1.21380 1.01220 0.87249 0.97110 1.20601 1.47297 1.00282 0.88608 0.91414 1.24947 0.94373 0.94675 0.99456 1.69996 1.42550 1.03232 1.35830 0.86282 0.78044 0.78429 0.83794 1.19430 1.20602 1.20589 1.74905 1.19237 1.16932 1.01916 1.74272 1.16659 1.15403 1.03958 1.22492 1.06447 0.90218 0.88503 1.18510 1.00276 0.97556 0.88847 1.22015 0.96765 0.95149 0.97015 1.22046 1.01370 1.01931 0.93423 1.22936 0.91770 0.90686 1.00372 1.67795 1.19230 1.14260 1.17298 1.23010 0.94494 0.97592 0.86813 0.90368 0.89896 0.91851 0.87887 0.88419 0.92772 0.92776 0.92258 0.83949 0.84216 0.82390 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 9.63 37.16 0.36 -1.23 16 2 C 0.09 1.01 5.85 -4.04 -0.02 0.98 16 3 N -0.46 -7.36 2.83 -114.08 -0.32 -7.68 16 4 C 0.19 3.78 8.07 -88.17 -0.71 3.07 16 5 S -0.05 -1.00 21.82 -107.50 -2.35 -3.35 16 6 C 0.08 2.01 4.99 36.00 0.18 2.19 16 7 C -0.53 -14.30 9.13 -34.44 -0.31 -14.61 16 8 H 0.07 1.77 7.71 -52.49 -0.40 1.37 16 9 C 0.07 1.96 5.46 -17.82 -0.10 1.86 16 10 N -0.88 -25.52 13.29 55.43 0.74 -24.78 16 11 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 N -0.29 -6.47 11.59 30.71 0.36 -6.12 16 16 N -0.26 -5.31 12.04 32.59 0.39 -4.92 16 17 C 0.19 3.14 7.71 -153.76 -1.19 1.95 16 18 C -0.05 -0.61 5.88 -104.82 -0.62 -1.23 16 19 C -0.08 -0.78 8.75 -38.88 -0.34 -1.12 16 20 C -0.17 -1.27 10.10 -39.50 -0.40 -1.67 16 21 C 0.10 0.87 11.17 -17.47 -0.20 0.67 16 22 N -0.48 -5.65 10.35 -12.90 -0.13 -5.78 16 23 C 0.14 1.80 10.88 -17.12 -0.19 1.62 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.56 7.09 -51.93 -0.37 0.19 16 27 H 0.10 1.06 7.99 -51.93 -0.42 0.65 16 28 H 0.10 0.80 5.71 -51.93 -0.30 0.50 16 29 H 0.05 1.51 8.14 -51.92 -0.42 1.09 16 30 H 0.05 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.14 1.11 3.61 -52.49 -0.19 0.92 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.17 2.18 7.99 -52.48 -0.42 1.77 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -32.61 317.48 -8.85 -41.46 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.76 Total: -1.82 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -3.53 Total: -7.51 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 1.03 Total: -49.28 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.35 Total: -3.35 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.61 -8.85 -41.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075322477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.386 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds