Wall clock time and date at job start Tue Mar 31 2020 08:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46621 * 2 1 4 4 C 1.36574 * 127.17215 * 274.51462 * 3 2 1 5 5 S 1.76191 * 126.38263 * 359.97438 * 4 3 2 6 6 C 1.81002 * 100.00134 * 180.02562 * 5 4 3 7 7 C 1.50694 * 109.47370 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00028 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00323 * 179.97438 * 7 6 5 10 10 N 1.31523 * 119.99477 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00419 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46984 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47294 * 120.00021 * 11 9 7 14 14 H 1.48496 * 109.47592 * 240.00330 * 11 9 7 15 15 N 1.31446 * 107.23031 * 180.02562 * 4 3 2 16 16 N 1.28513 * 110.08097 * 0.02562 * 15 4 3 17 17 C 1.31258 * 109.96195 * 0.02562 * 16 15 4 18 18 C 1.47841 * 126.46452 * 179.73836 * 17 16 15 19 19 C 1.40007 * 120.56169 * 161.07735 * 18 17 16 20 20 C 1.38349 * 118.29182 * 179.97438 * 19 18 17 21 21 C 1.38356 * 119.30577 * 359.97438 * 20 19 18 22 22 N 1.31911 * 121.08423 * 0.02562 * 21 20 19 23 23 C 1.31704 * 121.87088 * 359.72555 * 22 21 20 24 24 H 1.08997 * 109.47176 * 60.00391 * 1 2 3 25 25 H 1.08999 * 109.46922 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47015 * 299.99813 * 1 2 3 27 27 H 1.08997 * 109.47015 * 240.00186 * 2 1 3 28 28 H 1.08997 * 109.47176 * 119.99609 * 2 1 3 29 29 H 1.09002 * 109.46777 * 299.99981 * 6 5 4 30 30 H 1.08997 * 109.46996 * 59.99741 * 6 5 4 31 31 H 0.97000 * 119.99419 * 179.97438 * 10 9 7 32 32 H 1.08000 * 120.85105 * 359.97438 * 19 18 17 33 33 H 1.08002 * 120.34580 * 180.02562 * 20 19 18 34 34 H 1.07999 * 119.45756 * 179.97438 * 21 20 19 35 35 H 1.08007 * 119.71754 * 180.27257 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2125 2.1878 -1.0849 5 16 1.9215 1.7617 -2.7695 6 6 2.4021 3.3106 -3.5732 7 6 2.2301 3.1774 -5.0643 8 1 1.8669 2.2516 -5.4854 9 6 2.5354 4.2378 -5.8910 10 7 2.9773 5.3654 -5.3781 11 14 2.3228 4.0724 -7.7395 12 1 1.8159 2.7139 -8.0598 13 1 1.3517 5.0883 -8.2189 14 1 3.6313 4.2836 -8.4091 15 7 2.6581 3.3409 -0.6380 16 7 2.7553 3.3098 0.6431 17 6 2.3786 2.1356 1.0927 18 6 2.3512 1.7036 2.5063 19 6 1.5795 0.6036 2.8997 20 6 1.5888 0.2398 4.2344 21 6 2.3533 0.9671 5.1293 22 7 3.0709 1.9994 4.7301 23 6 3.0986 2.3815 3.4700 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7723 4.1210 -3.2061 30 1 3.4453 3.5296 -3.3455 31 1 3.1924 6.1112 -5.9598 32 1 0.9921 0.0533 2.1796 33 1 1.0059 -0.6037 4.5742 34 1 2.3620 0.6855 6.1719 35 1 3.7020 3.2293 3.1808 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075322477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:09 Heat of formation + Delta-G solvation = 87.922015 kcal Electronic energy + Delta-G solvation = -19724.837287 eV Core-core repulsion = 16656.592006 eV Total energy + Delta-G solvation = -3068.245281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.97765 -41.02044 -37.07456 -35.33302 -34.23919 -33.04995 -31.71260 -31.00120 -30.36499 -25.99304 -25.21401 -25.06649 -24.51044 -23.21357 -22.03606 -19.24979 -18.49531 -18.14548 -17.65215 -17.43866 -17.19068 -16.68680 -16.48026 -15.54011 -15.11543 -14.97401 -14.79298 -14.55608 -14.39703 -14.19802 -13.85260 -13.40059 -13.07382 -12.86124 -12.78592 -12.57613 -12.47932 -12.35581 -11.80290 -11.76118 -11.62156 -11.39077 -11.17913 -10.84838 -10.73167 -10.58344 -9.97719 -8.58163 -8.33458 -6.51837 -0.46542 0.12918 0.15841 0.74092 1.34189 1.42091 1.43223 1.53676 1.60372 1.66922 2.36358 2.75589 2.94265 3.01276 3.39321 3.51245 3.68105 3.73631 3.87428 3.89785 4.12984 4.18706 4.36938 4.46217 4.59017 4.69519 4.74433 4.86904 4.87389 4.97555 5.00738 5.09344 5.17494 5.51530 5.56615 5.66376 5.77398 6.57716 6.86639 7.18171 7.43709 8.78975 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.036221 B = 0.003480 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.841438 B = 8044.927577 C = 8718.727990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.079 3.921 3 N -0.454 5.454 4 C 0.164 3.836 5 S 0.008 5.992 6 C 0.076 3.924 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.014 3.986 10 N -0.923 5.923 11 Si 0.984 3.016 12 H -0.254 1.254 13 H -0.275 1.275 14 H -0.275 1.275 15 N -0.337 5.337 16 N -0.312 5.312 17 C 0.219 3.781 18 C -0.079 4.079 19 C -0.071 4.071 20 C -0.149 4.149 21 C 0.106 3.894 22 N -0.502 5.502 23 C 0.128 3.872 24 H 0.051 0.949 25 H 0.124 0.876 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.132 0.868 29 H 0.018 0.982 30 H 0.017 0.983 31 H 0.271 0.729 32 H 0.165 0.835 33 H 0.189 0.811 34 H 0.196 0.804 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 -18.179 18.095 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.041 4.041 3 N -0.148 5.148 4 C -0.210 4.210 5 S 0.238 5.762 6 C -0.073 4.073 7 C -0.583 4.583 8 H 0.096 0.904 9 C -0.187 4.187 10 N -0.561 5.561 11 Si 0.806 3.194 12 H -0.178 1.178 13 H -0.200 1.200 14 H -0.200 1.200 15 N -0.181 5.181 16 N -0.152 5.152 17 C -0.049 4.049 18 C -0.084 4.084 19 C -0.099 4.099 20 C -0.168 4.168 21 C -0.052 4.052 22 N -0.210 5.210 23 C -0.030 4.030 24 H 0.071 0.929 25 H 0.142 0.858 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.150 0.850 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.182 0.818 33 H 0.206 0.794 34 H 0.213 0.787 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.761 -17.143 18.147 25.620 hybrid contribution -0.130 0.451 -1.152 1.244 sum -5.891 -16.692 16.995 24.539 Atomic orbital electron populations 1.22279 0.91727 1.05947 1.02992 1.22686 0.97673 0.76443 1.07251 1.46826 1.49787 1.14732 1.03427 1.27352 1.04726 0.91294 0.97667 1.84748 1.82281 1.24410 0.84797 1.20933 0.98400 0.90018 0.97920 1.20986 1.47187 1.00832 0.89263 0.90379 1.26039 0.93587 0.94088 1.05033 1.70147 1.43685 1.04302 1.37976 0.85118 0.78185 0.79121 0.76934 1.17792 1.20011 1.20022 1.74772 1.20771 1.19061 1.03480 1.74162 1.19811 1.18096 1.03165 1.23144 1.02730 0.88967 0.90080 1.18543 1.03197 1.00058 0.86569 1.22308 0.95458 0.93437 0.98658 1.22545 1.00141 1.02237 0.91834 1.23714 0.89958 0.89048 1.02449 1.67824 1.20750 1.16041 1.16408 1.22795 0.94983 0.97605 0.87648 0.92943 0.85771 0.91473 0.87371 0.85023 0.96390 0.96415 0.92011 0.81821 0.79396 0.78678 0.83258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.63 71.98 0.69 -1.83 16 2 C 0.08 1.48 5.85 86.38 0.51 1.98 16 3 N -0.45 -14.29 2.83 -514.84 -1.46 -15.75 16 4 C 0.16 6.87 8.07 179.49 1.45 8.32 16 5 S 0.01 0.34 21.82 -56.49 -1.23 -0.89 16 6 C 0.08 4.18 4.99 71.23 0.36 4.54 16 7 C -0.54 -30.40 9.13 25.60 0.23 -30.16 16 8 H 0.08 4.10 7.71 -2.91 -0.02 4.08 16 9 C 0.01 0.80 5.46 84.65 0.46 1.26 16 10 N -0.92 -56.05 13.29 21.45 0.28 -55.76 16 11 Si 0.98 42.90 29.54 68.60 2.03 44.92 16 12 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 15 N -0.34 -16.46 11.59 -56.75 -0.66 -17.12 16 16 N -0.31 -13.58 12.04 -50.79 -0.61 -14.19 16 17 C 0.22 7.38 7.71 136.21 1.05 8.43 16 18 C -0.08 -1.95 5.88 -19.99 -0.12 -2.07 16 19 C -0.07 -1.08 8.75 22.73 0.20 -0.88 16 20 C -0.15 -1.41 10.10 22.32 0.23 -1.19 16 21 C 0.11 1.38 11.17 84.71 0.95 2.33 16 22 N -0.50 -11.02 10.35 -194.74 -2.01 -13.04 16 23 C 0.13 3.31 10.88 85.03 0.92 4.24 16 24 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.95 7.09 -2.39 -0.02 0.93 16 27 H 0.11 1.95 7.99 -2.39 -0.02 1.93 16 28 H 0.13 1.57 5.71 -2.39 -0.01 1.55 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.02 1.07 8.14 -2.40 -0.02 1.05 16 31 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.16 1.71 3.61 -2.91 -0.01 1.70 16 33 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 34 H 0.20 1.05 8.06 -2.91 -0.02 1.02 16 35 H 0.15 4.25 7.99 -2.91 -0.02 4.23 16 Total: -1.00 -78.80 317.48 4.38 -74.42 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: 1.12 Total: 2.44 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 6.93 Total: -5.04 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -4.46 Total: -115.86 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.23 Total: -0.89 kcal Total: -78.80 4.38 -74.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075322477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.339 kcal (2) G-P(sol) polarization free energy of solvation -78.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds