Wall clock time and date at job start Tue Mar 31 2020 08:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36452 * 127.16134 * 90.02716 * 3 2 1 5 5 S 1.76197 * 126.37641 * 0.02562 * 4 3 2 6 6 C 1.81005 * 100.00227 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47494 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99900 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00099 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00334 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00068 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47514 * 89.99500 * 11 9 7 13 13 H 1.48499 * 109.47114 * 209.99947 * 11 9 7 14 14 H 1.48499 * 109.47165 * 329.99785 * 11 9 7 15 15 N 1.31560 * 107.24797 * 180.02562 * 4 3 2 16 16 N 1.28511 * 110.06821 * 359.97438 * 15 4 3 17 17 C 1.31297 * 109.93877 * 359.72434 * 16 15 4 18 18 C 1.47752 * 126.46599 * 180.30427 * 17 16 15 19 19 C 1.39603 * 119.75326 * 0.15527 * 18 17 16 20 20 C 1.38308 * 119.04848 * 179.97438 * 19 18 17 21 21 C 1.38848 * 118.54054 * 0.02562 * 20 19 18 22 22 C 1.38257 * 119.41298 * 359.97438 * 21 20 19 23 23 N 1.31748 * 120.91841 * 359.73735 * 22 21 20 24 24 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 29 29 H 1.09003 * 109.46967 * 300.00031 * 6 5 4 30 30 H 1.09004 * 109.46832 * 59.99745 * 6 5 4 31 31 H 0.96991 * 120.00660 * 180.02562 * 10 9 7 32 32 H 1.08001 * 120.47094 * 0.02562 * 19 18 17 33 33 H 1.08006 * 120.72665 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.29687 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.54171 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2935 2.1582 1.0874 5 16 2.1284 1.6869 2.7772 6 6 2.6692 3.2144 3.5838 7 6 2.6087 3.0413 5.0796 8 1 2.2777 2.1039 5.5017 9 6 2.9759 4.0795 5.9091 10 7 3.3794 5.2208 5.3951 11 14 2.9016 3.8647 7.7632 12 1 4.2021 3.3416 8.2535 13 1 2.6225 5.1756 8.4026 14 1 1.8210 2.9060 8.1075 15 7 2.7050 3.3247 0.6393 16 7 2.7058 3.3281 -0.6458 17 6 2.3009 2.1634 -1.0968 18 6 2.1697 1.7681 -2.5144 19 6 2.4965 2.6788 -3.5207 20 6 2.3688 2.2932 -4.8428 21 6 1.9178 1.0093 -5.1188 22 6 1.6116 0.1579 -4.0734 23 7 1.7469 0.5466 -2.8219 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.6928 3.4403 3.2849 30 1 2.0146 4.0337 3.2864 31 1 3.6381 5.9511 5.9787 32 1 2.8449 3.6699 -3.2704 33 1 2.6145 2.9758 -5.6430 34 1 1.8079 0.6784 -6.1410 35 1 1.2603 -0.8410 -4.2857 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075322478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:07 Heat of formation + Delta-G solvation = 105.476375 kcal Electronic energy + Delta-G solvation = -19719.503665 eV Core-core repulsion = 16652.019598 eV Total energy + Delta-G solvation = -3067.484067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.45870 -40.14511 -35.50702 -33.19315 -32.86093 -32.48699 -30.40716 -29.48063 -28.51733 -24.81335 -24.00325 -23.52820 -23.09545 -21.80940 -20.83117 -17.85907 -17.01276 -16.62952 -16.19285 -16.00422 -15.84651 -15.38151 -14.69013 -14.38015 -14.12378 -13.96478 -13.40469 -13.09493 -12.98593 -12.43934 -12.37488 -12.26141 -12.14293 -11.36239 -11.21803 -10.93347 -10.83793 -10.56220 -10.36968 -10.17432 -10.05018 -9.98605 -9.75785 -9.65072 -9.24466 -8.87557 -8.57355 -6.87873 -6.19902 -4.28507 0.49446 0.99451 1.78954 2.10843 2.84125 3.06245 3.25399 3.31120 3.32811 3.46330 3.68512 3.71953 4.32778 4.41078 4.55775 4.76041 4.78476 4.87289 5.06208 5.11157 5.16335 5.28442 5.44184 5.55137 5.59414 5.66482 5.84662 5.88287 6.06667 6.10785 6.30498 6.37776 6.96030 7.11240 7.22249 7.59227 7.67340 7.92370 8.72123 8.93782 9.35078 10.90433 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.036523 B = 0.003491 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.446190 B = 8018.364223 C = 8683.312441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.104 3.896 3 N -0.448 5.448 4 C 0.187 3.813 5 S -0.047 6.047 6 C 0.077 3.923 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.072 3.928 10 N -0.881 5.881 11 Si 0.908 3.092 12 H -0.277 1.277 13 H -0.283 1.283 14 H -0.271 1.271 15 N -0.286 5.286 16 N -0.257 5.257 17 C 0.189 3.811 18 C 0.215 3.785 19 C -0.130 4.130 20 C -0.071 4.071 21 C -0.173 4.173 22 C 0.105 3.895 23 N -0.481 5.481 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.268 0.732 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 -11.342 -19.608 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.018 4.018 3 N -0.142 5.142 4 C -0.185 4.185 5 S 0.182 5.818 6 C -0.070 4.070 7 C -0.567 4.567 8 H 0.085 0.915 9 C -0.134 4.134 10 N -0.517 5.517 11 Si 0.734 3.266 12 H -0.203 1.203 13 H -0.209 1.209 14 H -0.195 1.195 15 N -0.132 5.132 16 N -0.101 5.101 17 C -0.077 4.077 18 C 0.078 3.922 19 C -0.152 4.152 20 C -0.097 4.097 21 C -0.194 4.194 22 C -0.053 4.053 23 N -0.192 5.192 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.445 -11.365 -18.350 22.038 hybrid contribution 0.152 0.412 -0.349 0.561 sum -4.293 -10.954 -18.700 22.093 Atomic orbital electron populations 1.22028 0.93862 1.02956 1.02984 1.22046 0.96078 0.78324 1.05333 1.46508 1.49469 1.13914 1.04304 1.27550 1.02618 0.91259 0.97101 1.85482 1.83011 1.28842 0.84427 1.21368 1.00787 0.87845 0.97033 1.20574 1.47579 1.00313 0.88251 0.91456 1.24937 0.94413 0.94636 0.99443 1.69979 1.42509 1.03415 1.35816 0.86342 0.78686 0.77739 0.83811 1.20264 1.20854 1.19529 1.74946 1.20371 1.16323 1.01568 1.74232 1.15860 1.15949 1.04077 1.22240 1.07904 0.89862 0.87729 1.18114 0.95979 0.89935 0.88207 1.22067 0.99557 1.01374 0.92226 1.21573 0.95564 0.96137 0.96406 1.22221 1.01149 0.94985 1.01014 1.22669 0.95779 0.99885 0.87008 1.67564 1.13411 1.15848 1.22391 0.92123 0.90516 0.91671 0.88957 0.86849 0.92817 0.92788 0.92251 0.83280 0.84159 0.84522 0.82267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.24 37.16 0.38 -1.52 16 2 C 0.10 1.41 6.23 -4.04 -0.03 1.38 16 3 N -0.45 -7.95 2.83 -114.09 -0.32 -8.28 16 4 C 0.19 3.97 8.07 -88.19 -0.71 3.26 16 5 S -0.05 -1.02 21.71 -107.50 -2.33 -3.35 16 6 C 0.08 2.04 4.99 36.00 0.18 2.22 16 7 C -0.53 -14.54 9.13 -34.44 -0.31 -14.86 16 8 H 0.07 1.79 7.71 -52.48 -0.40 1.39 16 9 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 10 N -0.88 -25.82 13.29 55.43 0.74 -25.08 16 11 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 N -0.29 -6.69 11.59 30.71 0.36 -6.33 16 16 N -0.26 -5.37 11.86 32.59 0.39 -4.99 16 17 C 0.19 3.38 7.82 -153.71 -1.20 2.18 16 18 C 0.22 3.04 6.75 -83.02 -0.56 2.48 16 19 C -0.13 -1.52 9.74 -39.05 -0.38 -1.90 16 20 C -0.07 -0.58 10.16 -39.33 -0.40 -0.98 16 21 C -0.17 -1.23 10.11 -39.35 -0.40 -1.63 16 22 C 0.10 0.89 11.17 -17.58 -0.20 0.69 16 23 N -0.48 -5.77 7.83 -9.85 -0.08 -5.85 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.19 7.85 -51.93 -0.41 0.78 16 28 H 0.11 1.39 6.25 -51.93 -0.32 1.06 16 29 H 0.05 1.53 8.14 -51.91 -0.42 1.10 16 30 H 0.05 1.53 8.14 -51.91 -0.42 1.11 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 32 H 0.15 1.75 7.86 -52.49 -0.41 1.34 16 33 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -32.58 322.68 -9.20 -41.78 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -4.07 Total: -1.96 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -3.73 Total: -6.80 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 1.08 Total: -50.52 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.02 SS G_CDS: -2.33 Total: -3.35 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.58 -9.20 -41.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075322478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.259 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds