Wall clock time and date at job start Tue Mar 31 2020 08:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.36452 * 127.16134 * 90.02716 * 3 2 1 5 5 S 1.76197 * 126.37641 * 0.02562 * 4 3 2 6 6 C 1.81005 * 100.00227 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47494 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99900 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00099 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00334 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00068 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47514 * 89.99500 * 11 9 7 13 13 H 1.48499 * 109.47114 * 209.99947 * 11 9 7 14 14 H 1.48499 * 109.47165 * 329.99785 * 11 9 7 15 15 N 1.31560 * 107.24797 * 180.02562 * 4 3 2 16 16 N 1.28511 * 110.06821 * 359.97438 * 15 4 3 17 17 C 1.31297 * 109.93877 * 359.72434 * 16 15 4 18 18 C 1.47752 * 126.46599 * 180.30427 * 17 16 15 19 19 C 1.39603 * 119.75326 * 0.15527 * 18 17 16 20 20 C 1.38308 * 119.04848 * 179.97438 * 19 18 17 21 21 C 1.38848 * 118.54054 * 0.02562 * 20 19 18 22 22 C 1.38257 * 119.41298 * 359.97438 * 21 20 19 23 23 N 1.31748 * 120.91841 * 359.73735 * 22 21 20 24 24 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00507 * 2 1 3 29 29 H 1.09003 * 109.46967 * 300.00031 * 6 5 4 30 30 H 1.09004 * 109.46832 * 59.99745 * 6 5 4 31 31 H 0.96991 * 120.00660 * 180.02562 * 10 9 7 32 32 H 1.08001 * 120.47094 * 0.02562 * 19 18 17 33 33 H 1.08006 * 120.72665 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.29687 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.54171 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2935 2.1582 1.0874 5 16 2.1284 1.6869 2.7772 6 6 2.6692 3.2144 3.5838 7 6 2.6087 3.0413 5.0796 8 1 2.2777 2.1039 5.5017 9 6 2.9759 4.0795 5.9091 10 7 3.3794 5.2208 5.3951 11 14 2.9016 3.8647 7.7632 12 1 4.2021 3.3416 8.2535 13 1 2.6225 5.1756 8.4026 14 1 1.8210 2.9060 8.1075 15 7 2.7050 3.3247 0.6393 16 7 2.7058 3.3281 -0.6458 17 6 2.3009 2.1634 -1.0968 18 6 2.1697 1.7681 -2.5144 19 6 2.4965 2.6788 -3.5207 20 6 2.3688 2.2932 -4.8428 21 6 1.9178 1.0093 -5.1188 22 6 1.6116 0.1579 -4.0734 23 7 1.7469 0.5466 -2.8219 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.6928 3.4403 3.2849 30 1 2.0146 4.0337 3.2864 31 1 3.6381 5.9511 5.9787 32 1 2.8449 3.6699 -3.2704 33 1 2.6145 2.9758 -5.6430 34 1 1.8079 0.6784 -6.1410 35 1 1.2603 -0.8410 -4.2857 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075322478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:59 Heat of formation + Delta-G solvation = 86.393319 kcal Electronic energy + Delta-G solvation = -19720.331168 eV Core-core repulsion = 16652.019598 eV Total energy + Delta-G solvation = -3068.311570 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 7.59 seconds Orbital eigenvalues (eV) -43.93745 -40.95424 -36.81479 -35.32786 -33.76919 -33.39587 -31.62872 -30.99515 -30.40060 -26.05247 -25.13946 -24.99338 -24.42107 -23.20554 -22.03326 -19.24078 -18.54370 -17.83655 -17.67808 -17.31153 -16.76530 -16.73209 -16.46839 -15.33755 -15.19271 -15.00796 -14.77384 -14.52810 -14.38414 -14.14697 -14.03150 -13.42227 -12.90107 -12.84835 -12.74718 -12.58068 -12.44440 -12.30012 -11.78732 -11.65507 -11.59107 -11.35852 -11.18948 -10.90593 -10.74970 -10.56264 -9.91101 -8.58711 -8.32687 -6.51147 -0.45558 0.13564 0.28128 0.76912 1.36176 1.42391 1.44920 1.55448 1.62108 1.62630 2.37044 2.65736 2.84265 3.01728 3.47629 3.65547 3.91198 4.02019 4.07043 4.08180 4.14751 4.30107 4.42518 4.50101 4.60619 4.76966 4.82024 4.87551 5.00000 5.01797 5.12333 5.14900 5.22028 5.52109 5.61968 5.71635 5.77848 6.57785 6.78699 7.18550 7.40320 8.79629 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.036523 B = 0.003491 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.446190 B = 8018.364223 C = 8683.312441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.097 3.903 3 N -0.443 5.443 4 C 0.161 3.839 5 S 0.003 5.997 6 C 0.078 3.922 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.015 3.985 10 N -0.923 5.923 11 Si 0.984 3.016 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.257 1.257 15 N -0.333 5.333 16 N -0.300 5.300 17 C 0.215 3.785 18 C 0.170 3.830 19 C -0.139 4.139 20 C -0.068 4.068 21 C -0.145 4.145 22 C 0.100 3.900 23 N -0.491 5.491 24 H 0.053 0.947 25 H 0.113 0.887 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.271 0.729 32 H 0.135 0.865 33 H 0.174 0.826 34 H 0.182 0.818 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.493 -14.348 -21.882 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 N -0.136 5.136 4 C -0.213 4.213 5 S 0.232 5.768 6 C -0.070 4.070 7 C -0.584 4.584 8 H 0.095 0.905 9 C -0.187 4.187 10 N -0.561 5.561 11 Si 0.806 3.194 12 H -0.192 1.192 13 H -0.204 1.204 14 H -0.181 1.181 15 N -0.178 5.178 16 N -0.142 5.142 17 C -0.053 4.053 18 C 0.034 3.966 19 C -0.161 4.161 20 C -0.093 4.093 21 C -0.165 4.165 22 C -0.059 4.059 23 N -0.202 5.202 24 H 0.072 0.928 25 H 0.132 0.868 26 H 0.064 0.936 27 H 0.116 0.884 28 H 0.149 0.851 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.153 0.847 33 H 0.191 0.809 34 H 0.199 0.801 35 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.512 -14.385 -20.641 25.756 hybrid contribution 0.441 1.216 -0.067 1.295 sum -5.071 -13.169 -20.709 25.060 Atomic orbital electron populations 1.21994 0.92349 1.04900 1.01669 1.22446 0.97273 0.76189 1.06462 1.46805 1.48662 1.14989 1.03125 1.27389 1.04411 0.91866 0.97682 1.84820 1.83156 1.24581 0.84212 1.20932 0.98143 0.90131 0.97841 1.20955 1.47706 1.00923 0.88847 0.90469 1.26030 0.93483 0.94028 1.05110 1.70130 1.43430 1.04504 1.37994 0.85167 0.79323 0.78066 0.76811 1.19243 1.20353 1.18083 1.74811 1.21759 1.18090 1.03165 1.74116 1.18834 1.18136 1.03134 1.23059 1.04066 0.88666 0.89552 1.17982 1.00318 0.91995 0.86294 1.22133 0.99735 1.00614 0.93625 1.21989 0.94537 0.97463 0.95332 1.22772 0.97267 0.93606 1.02842 1.23425 0.94813 1.01664 0.85972 1.67466 1.13429 1.14710 1.24642 0.92770 0.86841 0.93572 0.88375 0.85062 0.96305 0.96295 0.91966 0.84672 0.80868 0.80053 0.78523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 10.24 71.98 0.74 -2.64 16 2 C 0.10 2.51 6.23 86.38 0.54 3.05 16 3 N -0.44 -16.14 2.83 -514.87 -1.46 -17.60 16 4 C 0.16 7.22 8.07 179.50 1.45 8.67 16 5 S 0.00 0.14 21.71 -56.49 -1.23 -1.09 16 6 C 0.08 4.41 4.99 71.23 0.36 4.76 16 7 C -0.54 -31.10 9.13 25.60 0.23 -30.87 16 8 H 0.08 4.15 7.71 -2.91 -0.02 4.13 16 9 C 0.02 0.87 5.46 84.65 0.46 1.33 16 10 N -0.92 -56.46 13.29 21.45 0.28 -56.18 16 11 Si 0.98 43.46 29.54 68.60 2.03 45.49 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 13 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 15 N -0.33 -16.81 11.59 -56.76 -0.66 -17.47 16 16 N -0.30 -13.44 11.86 -50.80 -0.60 -14.04 16 17 C 0.21 7.98 7.82 136.15 1.07 9.04 16 18 C 0.17 4.73 6.75 41.83 0.28 5.01 16 19 C -0.14 -3.13 9.74 22.62 0.22 -2.91 16 20 C -0.07 -0.87 10.16 22.43 0.23 -0.64 16 21 C -0.14 -1.28 10.11 22.42 0.23 -1.06 16 22 C 0.10 1.25 11.17 84.71 0.95 2.19 16 23 N -0.49 -10.61 7.83 -185.07 -1.45 -12.06 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.10 2.43 7.85 -2.39 -0.02 2.41 16 28 H 0.13 2.96 6.25 -2.39 -0.01 2.95 16 29 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.14 3.33 7.86 -2.91 -0.02 3.31 16 33 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 35 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -77.82 322.68 4.76 -73.06 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.10 Total: 3.94 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 6.74 Total: -4.05 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -3.88 Total: -117.34 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.23 Total: -1.09 kcal Total: -77.82 4.76 -73.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075322478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.451 kcal (2) G-P(sol) polarization free energy of solvation -77.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.59 seconds