Wall clock time and date at job start Tue Mar 31 2020 06:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00204 * 2 1 4 4 H 1.48495 * 109.47460 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99936 * 3 2 1 6 6 H 1.48507 * 109.47200 * 59.99494 * 3 2 1 7 7 C 1.37881 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99395 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00086 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46727 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97385 * 125.00052 * 10 9 7 12 12 C 1.35237 * 107.86532 * 179.69333 * 11 10 9 13 13 C 1.40426 * 107.86928 * 0.26441 * 12 11 10 14 14 N 1.40065 * 125.97657 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00061 * 359.97438 * 14 13 12 16 16 O 1.21525 * 119.99682 * 0.02562 * 15 14 13 17 17 C 1.48121 * 119.99769 * 179.97438 * 15 14 13 18 18 C 1.39921 * 120.90647 * 180.02562 * 17 15 14 19 19 C 1.38023 * 119.06520 * 180.02562 * 18 17 15 20 20 N 1.31890 * 120.93851 * 0.02562 * 19 18 17 21 21 C 1.31966 * 122.01199 * 359.97438 * 20 19 18 22 22 F 1.35105 * 119.58449 * 179.97438 * 21 20 19 23 23 C 1.38519 * 120.82786 * 359.71455 * 21 20 19 24 24 N 1.31243 * 108.04447 * 359.97438 * 13 12 11 25 25 H 0.97005 * 119.99863 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46828 * 59.99953 * 9 7 2 27 27 H 1.08997 * 109.47120 * 299.99810 * 9 7 2 28 28 H 1.08002 * 126.06889 * 359.96170 * 11 10 9 29 29 H 1.08006 * 126.06160 * 180.29839 * 12 11 10 30 30 H 0.96998 * 119.99888 * 180.02562 * 14 13 12 31 31 H 1.08003 * 120.46149 * 0.02562 * 18 17 15 32 32 H 1.07996 * 119.53202 * 180.02562 * 19 18 17 33 33 H 1.08000 * 120.51101 * 180.29042 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 2.2412 -4.6220 0.8970 12 6 3.2558 -5.4462 0.5499 13 6 3.8662 -4.9179 -0.5991 14 7 4.9587 -5.4713 -1.2788 15 6 5.5187 -6.6146 -0.8364 16 8 5.0753 -7.1656 0.1518 17 6 6.6737 -7.2001 -1.5555 18 6 7.2693 -8.3865 -1.1133 19 6 8.3441 -8.8982 -1.8120 20 7 8.8111 -8.2850 -2.8822 21 6 8.2801 -7.1645 -3.3340 22 9 8.7982 -6.5773 -4.4350 23 6 7.1948 -6.5858 -2.6968 24 7 3.2338 -3.8149 -0.9248 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 1.5767 -4.7512 1.7385 29 1 3.5448 -6.3505 1.0648 30 1 5.3128 -5.0312 -2.0673 31 1 6.8932 -8.8946 -0.2376 32 1 8.8092 -9.8136 -1.4775 33 1 6.7614 -5.6712 -3.0737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117710514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:49 Heat of formation + Delta-G solvation = 50.545375 kcal Electronic energy + Delta-G solvation = -21193.201816 eV Core-core repulsion = 17557.122587 eV Total energy + Delta-G solvation = -3636.079230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 5.79 seconds Orbital eigenvalues (eV) -49.39880 -41.17362 -40.41848 -39.05567 -35.09846 -33.67895 -33.11692 -31.41113 -30.92701 -29.45124 -26.99284 -25.51356 -24.15388 -23.05488 -21.88064 -20.58119 -19.91036 -18.56127 -17.71573 -17.00630 -16.65914 -16.54296 -16.50506 -16.08360 -15.45028 -15.32985 -15.00263 -14.39752 -14.19102 -13.96626 -13.83148 -13.46501 -12.92609 -12.69091 -12.42879 -12.33788 -11.89661 -11.14155 -10.94436 -10.62598 -10.52450 -10.49175 -10.32015 -10.16418 -9.82628 -9.56857 -9.53723 -8.69203 -8.27906 -7.61976 -6.29949 -4.35261 0.09424 0.39820 2.24389 2.44190 2.77712 3.04370 3.17394 3.18939 3.26805 3.32735 3.61403 3.62486 3.94605 4.20345 4.27746 4.37332 4.40118 4.88253 5.01643 5.05599 5.23524 5.39242 5.50628 5.64878 6.01907 6.06900 6.34106 6.42543 6.76170 6.97507 7.08291 7.19007 7.38098 7.64180 7.80205 7.91650 7.93490 8.49296 8.73628 9.30868 10.78921 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.003166 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.453742 B = 8841.403612 C = 9787.794947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.257 3.743 10 N -0.315 5.315 11 C 0.054 3.946 12 C -0.286 4.286 13 C 0.252 3.748 14 N -0.619 5.619 15 C 0.564 3.436 16 O -0.499 6.499 17 C -0.050 4.050 18 C -0.124 4.124 19 C 0.136 3.864 20 N -0.500 5.500 21 C 0.309 3.691 22 F -0.107 7.107 23 C -0.164 4.164 24 N -0.299 5.299 25 H 0.267 0.733 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.170 0.830 29 H 0.161 0.839 30 H 0.412 0.588 31 H 0.161 0.839 32 H 0.178 0.822 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.858 -15.895 -2.732 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.097 5.097 11 C -0.096 4.096 12 C -0.317 4.317 13 C -0.001 4.001 14 N -0.266 5.266 15 C 0.349 3.651 16 O -0.373 6.373 17 C -0.061 4.061 18 C -0.145 4.145 19 C -0.020 4.020 20 N -0.216 5.216 21 C 0.156 3.844 22 F -0.086 7.086 23 C -0.186 4.186 24 N -0.130 5.130 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.188 0.812 29 H 0.178 0.822 30 H 0.248 0.752 31 H 0.179 0.821 32 H 0.195 0.805 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.922 -15.398 -3.330 20.375 hybrid contribution -0.010 1.106 0.273 1.140 sum 12.912 -14.291 -3.058 19.502 Atomic orbital electron populations 1.69925 1.06057 1.27615 1.49662 1.24950 0.94992 0.99601 0.94518 0.86268 0.80044 0.82398 0.77777 1.19551 1.20644 1.20721 1.21285 0.94032 0.89321 1.52200 0.91215 1.19800 0.85568 0.81253 0.99430 1.49140 1.22843 1.19724 1.17955 1.22592 1.00253 0.90065 0.96726 1.21510 1.02270 1.06322 1.01580 1.19005 0.91524 0.94598 0.94967 1.42221 1.29949 1.24156 1.30287 1.17862 0.82592 0.80303 0.84352 1.90749 1.61529 1.60205 1.24775 1.20144 0.95675 0.95765 0.94509 1.22393 0.95844 0.94774 1.01507 1.22605 0.92510 0.98450 0.88461 1.66915 1.31393 1.08250 1.14998 1.17939 0.91096 0.90107 0.85292 1.91670 1.86100 1.81445 1.49381 1.22088 0.97257 1.02669 0.96624 1.77357 1.03469 1.15840 1.16316 0.92312 0.93567 0.92381 0.81247 0.82183 0.75184 0.82127 0.80532 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.86 13.29 55.43 0.74 -24.12 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.40 9.23 -34.44 -0.32 -14.72 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.26 6.33 6.26 -5.20 -0.03 6.29 16 10 N -0.31 -7.03 3.67 -62.56 -0.23 -7.26 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.29 -5.31 9.60 -39.83 -0.38 -5.69 16 13 C 0.25 4.77 8.11 -154.45 -1.25 3.51 16 14 N -0.62 -8.87 5.40 -11.91 -0.06 -8.94 16 15 C 0.56 7.41 7.76 -12.20 -0.09 7.31 16 16 O -0.50 -7.78 13.57 5.34 0.07 -7.70 16 17 C -0.05 -0.49 5.91 -104.67 -0.62 -1.11 16 18 C -0.12 -0.99 9.68 -39.03 -0.38 -1.36 16 19 C 0.14 0.97 11.17 -17.61 -0.20 0.77 16 20 N -0.50 -4.92 10.35 -13.65 -0.14 -5.06 16 21 C 0.31 3.06 8.41 -17.39 -0.15 2.91 16 22 F -0.11 -1.12 17.29 2.25 0.04 -1.08 16 23 C -0.16 -1.46 9.59 -38.93 -0.37 -1.83 16 24 N -0.30 -6.58 12.42 31.43 0.39 -6.19 16 25 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 28 H 0.17 2.57 8.06 -52.49 -0.42 2.15 16 29 H 0.16 2.83 5.91 -52.48 -0.31 2.52 16 30 H 0.41 4.75 6.96 -40.82 -0.28 4.46 16 31 H 0.16 1.08 7.74 -52.48 -0.41 0.68 16 32 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 33 H 0.15 1.07 6.53 -52.49 -0.34 0.73 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -32.16 305.05 -6.28 -38.45 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -2.58 Total: 2.84 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -4.09 Total: -1.50 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.69 Total: -51.56 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.07 Total: -7.70 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.16 -6.28 -38.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.991 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.79 seconds