Wall clock time and date at job start Tue Mar 31 2020 06:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00204 * 2 1 4 4 H 1.48495 * 109.47460 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99936 * 3 2 1 6 6 H 1.48507 * 109.47200 * 59.99494 * 3 2 1 7 7 C 1.37881 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99395 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00086 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46727 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97385 * 125.00052 * 10 9 7 12 12 C 1.35237 * 107.86532 * 179.69333 * 11 10 9 13 13 C 1.40426 * 107.86928 * 0.26441 * 12 11 10 14 14 N 1.40065 * 125.97657 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00061 * 359.97438 * 14 13 12 16 16 O 1.21525 * 119.99682 * 0.02562 * 15 14 13 17 17 C 1.48121 * 119.99769 * 179.97438 * 15 14 13 18 18 C 1.39921 * 120.90647 * 180.02562 * 17 15 14 19 19 C 1.38023 * 119.06520 * 180.02562 * 18 17 15 20 20 N 1.31890 * 120.93851 * 0.02562 * 19 18 17 21 21 C 1.31966 * 122.01199 * 359.97438 * 20 19 18 22 22 F 1.35105 * 119.58449 * 179.97438 * 21 20 19 23 23 C 1.38519 * 120.82786 * 359.71455 * 21 20 19 24 24 N 1.31243 * 108.04447 * 359.97438 * 13 12 11 25 25 H 0.97005 * 119.99863 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.46828 * 59.99953 * 9 7 2 27 27 H 1.08997 * 109.47120 * 299.99810 * 9 7 2 28 28 H 1.08002 * 126.06889 * 359.96170 * 11 10 9 29 29 H 1.08006 * 126.06160 * 180.29839 * 12 11 10 30 30 H 0.96998 * 119.99888 * 180.02562 * 14 13 12 31 31 H 1.08003 * 120.46149 * 0.02562 * 18 17 15 32 32 H 1.07996 * 119.53202 * 180.02562 * 19 18 17 33 33 H 1.08000 * 120.51101 * 180.29042 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 2.2412 -4.6220 0.8970 12 6 3.2558 -5.4462 0.5499 13 6 3.8662 -4.9179 -0.5991 14 7 4.9587 -5.4713 -1.2788 15 6 5.5187 -6.6146 -0.8364 16 8 5.0753 -7.1656 0.1518 17 6 6.6737 -7.2001 -1.5555 18 6 7.2693 -8.3865 -1.1133 19 6 8.3441 -8.8982 -1.8120 20 7 8.8111 -8.2850 -2.8822 21 6 8.2801 -7.1645 -3.3340 22 9 8.7982 -6.5773 -4.4350 23 6 7.1948 -6.5858 -2.6968 24 7 3.2338 -3.8149 -0.9248 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 1.5767 -4.7512 1.7385 29 1 3.5448 -6.3505 1.0648 30 1 5.3128 -5.0312 -2.0673 31 1 6.8932 -8.8946 -0.2376 32 1 8.8092 -9.8136 -1.4775 33 1 6.7614 -5.6712 -3.0737 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117710514.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:45 Heat of formation + Delta-G solvation = 29.620587 kcal Electronic energy + Delta-G solvation = -21194.109183 eV Core-core repulsion = 17557.122587 eV Total energy + Delta-G solvation = -3636.986597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.15022 -42.39222 -41.51047 -40.11671 -36.42495 -35.39584 -34.16148 -32.68852 -31.99612 -30.99231 -28.73014 -26.58408 -25.06442 -24.57613 -23.04605 -22.02075 -21.20833 -19.56316 -18.74620 -18.54128 -18.05495 -17.64276 -17.26879 -16.97963 -16.88449 -16.60978 -16.16143 -15.82179 -15.56825 -15.00398 -14.65471 -14.47799 -14.34067 -14.17102 -13.87250 -13.69741 -13.28926 -12.95742 -12.74455 -12.32537 -12.13837 -11.74064 -11.45410 -11.34508 -11.29484 -10.86376 -10.73160 -10.18952 -9.81652 -9.19033 -8.34395 -6.48065 -0.68168 -0.25506 0.98420 1.19451 1.36974 1.38640 1.46985 1.52109 2.11950 2.17049 2.34744 2.39589 2.54472 2.98041 3.10618 3.47393 3.66738 3.70319 3.94268 4.19840 4.26452 4.39550 4.62666 4.68246 4.81300 4.87151 4.91480 5.01299 5.09262 5.38304 5.55962 5.78073 5.83364 6.09378 6.25579 6.43826 6.63487 6.77480 6.99403 7.22183 8.73646 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.003166 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.453742 B = 8841.403612 C = 9787.794947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.271 3.729 10 N -0.341 5.341 11 C 0.058 3.942 12 C -0.290 4.290 13 C 0.261 3.739 14 N -0.616 5.616 15 C 0.570 3.430 16 O -0.523 6.523 17 C -0.061 4.061 18 C -0.113 4.113 19 C 0.147 3.853 20 N -0.517 5.517 21 C 0.293 3.707 22 F -0.115 7.115 23 C -0.157 4.157 24 N -0.342 5.342 25 H 0.273 0.727 26 H 0.023 0.977 27 H 0.061 0.939 28 H 0.204 0.796 29 H 0.173 0.827 30 H 0.423 0.577 31 H 0.176 0.824 32 H 0.217 0.783 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.230 -16.913 -2.262 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.123 5.123 11 C -0.090 4.090 12 C -0.321 4.321 13 C 0.007 3.993 14 N -0.266 5.266 15 C 0.357 3.643 16 O -0.397 6.397 17 C -0.072 4.072 18 C -0.133 4.133 19 C -0.010 4.010 20 N -0.233 5.233 21 C 0.141 3.859 22 F -0.094 7.094 23 C -0.179 4.179 24 N -0.173 5.173 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.221 0.779 29 H 0.190 0.810 30 H 0.262 0.738 31 H 0.194 0.806 32 H 0.234 0.766 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 14.314 -16.432 -2.880 21.981 hybrid contribution -0.355 1.243 0.140 1.300 sum 13.959 -15.189 -2.739 20.810 Atomic orbital electron populations 1.69998 1.07194 1.28720 1.49998 1.25725 0.95822 1.02696 0.93904 0.85309 0.78425 0.78455 0.78281 1.19895 1.19915 1.19548 1.21433 0.93407 0.90965 1.52744 0.92895 1.19370 0.85646 0.81453 0.98270 1.48872 1.23549 1.20380 1.19544 1.23222 1.00474 0.88677 0.96649 1.21739 1.02166 1.06604 1.01581 1.19342 0.91666 0.93482 0.94818 1.42341 1.28964 1.24647 1.30603 1.18311 0.82694 0.79329 0.83918 1.90722 1.62410 1.60682 1.25914 1.19887 0.95229 0.96928 0.95148 1.22651 0.95385 0.93702 1.01593 1.23236 0.91711 0.98992 0.87044 1.66974 1.31931 1.08383 1.15973 1.18043 0.91689 0.90624 0.85565 1.91647 1.86255 1.81674 1.49827 1.22124 0.96773 1.02943 0.96061 1.77272 1.04634 1.17826 1.17588 0.91831 0.95944 0.92157 0.77946 0.80985 0.73769 0.80644 0.76631 0.81407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.42 13.29 21.45 0.28 -51.14 16 2 C 0.02 1.03 5.46 84.66 0.46 1.49 16 3 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.55 -30.31 9.23 25.60 0.24 -30.08 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.27 13.71 6.26 85.63 0.54 14.25 16 10 N -0.34 -15.46 3.67 -351.85 -1.29 -16.75 16 11 C 0.06 2.17 11.43 83.52 0.95 3.12 16 12 C -0.29 -10.53 9.60 22.11 0.21 -10.31 16 13 C 0.26 9.81 8.11 133.35 1.08 10.89 16 14 N -0.62 -17.18 5.40 -309.89 -1.67 -18.86 16 15 C 0.57 14.18 7.76 86.87 0.67 14.85 16 16 O -0.52 -15.46 13.57 -3.80 -0.05 -15.51 16 17 C -0.06 -1.08 5.91 -19.89 -0.12 -1.20 16 18 C -0.11 -1.47 9.68 22.63 0.22 -1.25 16 19 C 0.15 1.62 11.17 84.63 0.95 2.57 16 20 N -0.52 -9.05 10.35 -197.09 -2.04 -11.09 16 21 C 0.29 5.41 8.41 84.74 0.71 6.12 16 22 F -0.11 -2.32 17.29 44.97 0.78 -1.54 16 23 C -0.16 -2.56 9.59 22.69 0.22 -2.34 16 24 N -0.34 -15.31 12.42 -54.49 -0.68 -15.98 16 25 H 0.27 14.22 8.31 -92.70 -0.77 13.45 16 26 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 28 H 0.20 5.83 8.06 -2.91 -0.02 5.81 16 29 H 0.17 5.83 5.91 -2.91 -0.02 5.82 16 30 H 0.42 9.48 6.96 -92.71 -0.65 8.83 16 31 H 0.18 1.80 7.74 -2.91 -0.02 1.77 16 32 H 0.22 0.57 8.06 -2.91 -0.02 0.54 16 33 H 0.17 2.13 6.53 -2.91 -0.02 2.11 16 Total: -1.00 -69.49 305.05 4.03 -65.47 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.54 Total: 12.24 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 6.13 Total: 8.11 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -5.40 Total: -113.82 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.05 Total: -15.51 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -69.49 4.03 -65.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117710514.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.087 kcal (2) G-P(sol) polarization free energy of solvation -69.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds