Wall clock time and date at job start Tue Mar 31 2020 06:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48500 * 109.46921 * 240.00274 * 3 2 1 5 5 H 1.48506 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47056 * 120.00159 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.46810 * 180.02562 * 11 10 9 13 13 C 1.76197 * 103.00045 * 179.97438 * 12 11 10 14 14 N 1.31343 * 125.48888 * 0.02562 * 13 12 11 15 15 N 1.40429 * 106.94888 * 179.97438 * 14 13 12 16 16 H 0.96989 * 126.81051 * 179.97438 * 15 14 13 17 17 C 1.35178 * 106.38292 * 359.97438 * 15 14 13 18 18 C 1.47971 * 126.02382 * 180.02562 * 17 15 14 19 19 C 1.39937 * 120.55291 * 179.97438 * 18 17 15 20 20 C 1.38374 * 118.29669 * 179.97438 * 19 18 17 21 21 C 1.38337 * 119.30124 * 0.02562 * 20 19 18 22 22 N 1.31903 * 121.06529 * 359.97438 * 21 20 19 23 23 C 1.31727 * 121.86923 * 359.70425 * 22 21 20 24 24 N 1.31804 * 107.94521 * 359.77482 * 17 15 14 25 25 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 27 27 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 28 28 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 29 29 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 30 30 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 31 31 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 32 32 H 1.08001 * 120.85228 * 0.02932 * 19 18 17 33 33 H 1.08007 * 120.34917 * 180.02562 * 20 19 18 34 34 H 1.07996 * 119.46578 * 179.97438 * 21 20 19 35 35 H 1.07999 * 119.70949 * 180.28758 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 16 2.6592 -6.3658 0.0007 13 6 1.6119 -7.7827 0.0006 14 7 0.2987 -7.7603 -0.0004 15 7 -0.1336 -9.0964 -0.0007 16 1 -1.0513 -9.4102 -0.0010 17 6 0.9830 -9.8584 -0.0004 18 6 1.0272 -11.3374 -0.0011 19 6 2.2530 -12.0124 -0.0012 20 6 2.2398 -13.3961 -0.0013 21 6 1.0271 -14.0616 -0.0018 22 7 -0.1132 -13.3986 -0.0016 23 6 -0.1521 -12.0819 0.0047 24 7 2.0252 -9.0516 -0.0049 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 2.8721 -3.6043 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 0.8541 -5.0446 -0.8903 31 1 0.8535 -5.0451 0.8897 32 1 3.1854 -11.4674 -0.0004 33 1 3.1666 -13.9507 -0.0010 34 1 1.0137 -15.1415 -0.0023 35 1 -1.1055 -11.5746 0.0093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122473882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:17 Heat of formation + Delta-G solvation = 103.829029 kcal Electronic energy + Delta-G solvation = -18503.541585 eV Core-core repulsion = 15435.986084 eV Total energy + Delta-G solvation = -3067.555501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.27167 -40.45042 -34.51855 -33.85116 -33.11432 -32.26652 -32.03829 -30.24002 -27.49987 -24.95507 -24.37547 -23.52255 -22.83692 -21.37282 -20.23177 -18.90077 -17.49679 -16.74231 -16.46973 -16.35796 -15.96679 -15.90259 -14.64141 -14.63901 -14.44683 -14.36253 -13.84306 -13.60870 -12.88553 -12.53911 -12.17641 -11.94638 -11.85583 -11.16605 -11.10545 -10.86571 -10.71143 -10.65420 -10.52463 -10.21831 -10.15282 -10.05067 -9.83201 -9.37057 -9.28001 -9.14458 -8.37066 -7.59332 -6.02026 -4.05023 0.03268 0.67028 1.24384 1.51828 2.14462 2.55387 2.67709 3.30517 3.33633 3.37793 3.40517 3.56342 3.88785 4.21255 4.25564 4.42315 4.44887 4.68652 4.92569 5.03769 5.33713 5.45164 5.46923 5.53687 5.57687 5.63670 5.92775 6.00967 6.08526 6.47748 6.64108 6.66856 6.96090 7.29538 7.62278 7.62388 7.73603 7.96377 8.36955 9.01121 9.59148 11.09167 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.061418 B = 0.002254 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.784536 B =12418.058599 C =12848.092815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.030 3.970 10 C -0.096 4.096 11 C -0.100 4.100 12 S 0.005 5.995 13 C 0.218 3.782 14 N -0.303 5.303 15 N -0.473 5.473 16 H 0.441 0.559 17 C 0.329 3.671 18 C -0.081 4.081 19 C -0.022 4.022 20 C -0.170 4.170 21 C 0.114 3.886 22 N -0.480 5.480 23 C 0.125 3.875 24 N -0.504 5.504 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.163 0.837 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 -28.342 0.024 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.136 4.136 11 C -0.249 4.249 12 S 0.233 5.767 13 C -0.171 4.171 14 N -0.136 5.136 15 N -0.192 5.192 16 H 0.287 0.713 17 C 0.051 3.949 18 C -0.086 4.086 19 C -0.049 4.049 20 C -0.190 4.190 21 C -0.043 4.043 22 N -0.188 5.188 23 C -0.036 4.036 24 N -0.234 5.234 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.180 0.820 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.981 -28.040 0.012 28.109 hybrid contribution -0.912 0.902 0.000 1.283 sum 1.069 -27.137 0.012 27.158 Atomic orbital electron populations 1.69955 1.06070 1.26820 1.50564 1.25027 0.94876 0.99321 0.95232 0.86618 0.79543 0.82938 0.78680 1.20182 1.21309 1.20174 1.21170 0.93107 0.90780 1.50996 0.92488 1.19087 0.93700 0.90479 0.97672 1.21524 0.99406 0.90804 1.01845 1.23997 1.00036 0.94635 1.06222 1.85742 1.08795 0.90413 1.91704 1.26283 0.92623 0.97747 1.00436 1.78567 1.11572 0.94899 1.28591 1.47917 1.09496 1.04323 1.57491 0.71290 1.21984 0.83198 0.92482 0.97260 1.18635 0.96049 0.87087 1.06816 1.21803 0.98053 0.94165 0.90910 1.22227 1.00378 0.94557 1.01852 1.23023 0.87510 1.00956 0.92838 1.67734 1.30273 1.08412 1.12402 1.22757 0.96751 0.89984 0.94075 1.70733 1.28645 0.99022 1.24982 0.92884 0.96241 0.96227 0.92017 0.92026 0.89348 0.89352 0.82871 0.83595 0.81953 0.82784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 10 C -0.10 -1.94 5.16 -26.73 -0.14 -2.07 16 11 C -0.10 -1.76 5.55 37.16 0.21 -1.56 16 12 S 0.00 0.08 22.16 -107.50 -2.38 -2.31 16 13 C 0.22 3.52 8.26 -91.10 -0.75 2.77 16 14 N -0.30 -4.70 12.34 30.10 0.37 -4.33 16 15 N -0.47 -5.39 7.34 32.24 0.24 -5.15 16 16 H 0.44 3.22 8.13 -182.36 -1.48 1.74 16 17 C 0.33 3.86 7.84 -155.48 -1.22 2.65 16 18 C -0.08 -0.71 5.89 -104.82 -0.62 -1.33 16 19 C -0.02 -0.16 9.82 -38.90 -0.38 -0.54 16 20 C -0.17 -0.90 10.10 -39.49 -0.40 -1.30 16 21 C 0.11 0.66 11.17 -17.48 -0.20 0.46 16 22 N -0.48 -3.82 10.35 -12.93 -0.13 -3.95 16 23 C 0.12 0.93 10.87 -17.14 -0.19 0.75 16 24 N -0.50 -7.42 10.94 -11.47 -0.13 -7.54 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 31 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 32 H 0.15 1.14 7.93 -52.49 -0.42 0.73 16 33 H 0.15 0.36 8.06 -52.48 -0.42 -0.06 16 34 H 0.16 0.46 8.06 -52.49 -0.42 0.03 16 35 H 0.15 0.76 7.22 -52.49 -0.38 0.38 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -33.63 325.79 -10.84 -44.47 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -5.20 Total: -3.65 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -4.23 Total: -12.96 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 1.09 Total: -47.01 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.38 Total: -2.31 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.63 -10.84 -44.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122473882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.304 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds