Wall clock time and date at job start Tue Mar 31 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48500 * 109.46921 * 240.00274 * 3 2 1 5 5 H 1.48506 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47056 * 120.00159 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.46810 * 180.02562 * 11 10 9 13 13 C 1.76197 * 103.00045 * 179.97438 * 12 11 10 14 14 N 1.31343 * 125.48888 * 0.02562 * 13 12 11 15 15 N 1.40429 * 106.94888 * 179.97438 * 14 13 12 16 16 H 0.96989 * 126.81051 * 179.97438 * 15 14 13 17 17 C 1.35178 * 106.38292 * 359.97438 * 15 14 13 18 18 C 1.47971 * 126.02382 * 180.02562 * 17 15 14 19 19 C 1.39937 * 120.55291 * 179.97438 * 18 17 15 20 20 C 1.38374 * 118.29669 * 179.97438 * 19 18 17 21 21 C 1.38337 * 119.30124 * 0.02562 * 20 19 18 22 22 N 1.31903 * 121.06529 * 359.97438 * 21 20 19 23 23 C 1.31727 * 121.86923 * 359.70425 * 22 21 20 24 24 N 1.31804 * 107.94521 * 359.77482 * 17 15 14 25 25 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 27 27 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 28 28 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 29 29 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 30 30 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 31 31 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 32 32 H 1.08001 * 120.85228 * 0.02932 * 19 18 17 33 33 H 1.08007 * 120.34917 * 180.02562 * 20 19 18 34 34 H 1.07996 * 119.46578 * 179.97438 * 21 20 19 35 35 H 1.07999 * 119.70949 * 180.28758 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 16 2.6592 -6.3658 0.0007 13 6 1.6119 -7.7827 0.0006 14 7 0.2987 -7.7603 -0.0004 15 7 -0.1336 -9.0964 -0.0007 16 1 -1.0513 -9.4102 -0.0010 17 6 0.9830 -9.8584 -0.0004 18 6 1.0272 -11.3374 -0.0011 19 6 2.2530 -12.0124 -0.0012 20 6 2.2398 -13.3961 -0.0013 21 6 1.0271 -14.0616 -0.0018 22 7 -0.1132 -13.3986 -0.0016 23 6 -0.1521 -12.0819 0.0047 24 7 2.0252 -9.0516 -0.0049 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8902 28 1 2.8721 -3.6043 0.8905 29 1 2.8721 -3.6042 -0.8895 30 1 0.8541 -5.0446 -0.8903 31 1 0.8535 -5.0451 0.8897 32 1 3.1854 -11.4674 -0.0004 33 1 3.1666 -13.9507 -0.0010 34 1 1.0137 -15.1415 -0.0023 35 1 -1.1055 -11.5746 0.0093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122473882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:14 Heat of formation + Delta-G solvation = 83.314241 kcal Electronic energy + Delta-G solvation = -18504.431173 eV Core-core repulsion = 15435.986084 eV Total energy + Delta-G solvation = -3068.445089 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -43.27801 -41.00293 -36.39538 -34.59473 -34.09446 -33.97783 -32.92632 -31.10073 -29.41541 -25.73997 -25.43397 -24.94648 -23.83174 -22.42564 -21.83789 -19.78822 -18.55726 -18.03241 -17.60414 -17.10006 -17.01177 -16.91180 -16.54867 -16.19870 -15.38198 -14.97642 -14.87408 -14.46455 -14.17810 -13.75043 -13.71310 -13.62958 -12.92846 -12.84945 -12.73997 -12.44404 -12.15047 -11.89733 -11.69563 -11.63545 -11.47334 -11.27521 -11.09393 -10.79257 -10.65137 -10.54419 -10.00904 -8.84074 -8.19395 -6.30571 -0.61858 0.00209 0.16193 0.56453 0.98970 1.42396 1.45444 1.53210 1.55909 1.60749 2.42611 2.75583 2.80847 3.14176 3.33545 3.51195 3.71578 3.94300 3.96466 4.00730 4.08516 4.35541 4.52109 4.57588 4.62790 4.78588 4.82643 4.94781 5.03891 5.10286 5.13535 5.50106 5.54131 5.67835 5.83124 5.87466 6.22217 6.58661 6.79742 6.85382 7.38584 8.92244 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.061418 B = 0.002254 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.784536 B =12418.058599 C =12848.092815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.032 3.968 10 C -0.082 4.082 11 C -0.093 4.093 12 S 0.024 5.976 13 C 0.201 3.799 14 N -0.331 5.331 15 N -0.461 5.461 16 H 0.458 0.542 17 C 0.344 3.656 18 C -0.103 4.103 19 C -0.030 4.030 20 C -0.161 4.161 21 C 0.118 3.882 22 N -0.503 5.503 23 C 0.128 3.872 24 N -0.529 5.529 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.004 1.004 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.150 0.850 33 H 0.179 0.821 34 H 0.195 0.805 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -30.310 0.026 30.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.007 4.007 10 C -0.121 4.121 11 C -0.243 4.243 12 S 0.252 5.748 13 C -0.189 4.189 14 N -0.166 5.166 15 N -0.182 5.182 16 H 0.307 0.693 17 C 0.067 3.933 18 C -0.108 4.108 19 C -0.058 4.058 20 C -0.180 4.180 21 C -0.039 4.039 22 N -0.211 5.211 23 C -0.032 4.032 24 N -0.259 5.259 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.168 0.832 33 H 0.196 0.804 34 H 0.212 0.788 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.044 -30.030 0.015 30.184 hybrid contribution -1.289 1.246 -0.001 1.793 sum 1.755 -28.784 0.014 28.837 Atomic orbital electron populations 1.70094 1.07816 1.27868 1.51580 1.25997 0.95789 1.03437 0.94728 0.85477 0.78224 0.77953 0.79265 1.19096 1.21009 1.19082 1.21645 0.93765 0.92028 1.50671 0.91705 1.18963 0.94154 0.92268 0.95357 1.21222 0.98217 0.90285 1.02402 1.23670 1.00085 0.94705 1.05798 1.85479 1.07498 0.89737 1.92096 1.26228 0.92901 0.98214 1.01509 1.78459 1.11508 0.97213 1.29389 1.47804 1.10523 1.03040 1.56858 0.69270 1.22420 0.82437 0.93489 0.94990 1.18675 0.97325 0.85322 1.09499 1.21962 0.97505 0.95369 0.90933 1.22544 1.01680 0.93525 1.00237 1.23644 0.87029 1.02492 0.90716 1.67824 1.31478 1.08423 1.13394 1.23021 0.97058 0.90073 0.93081 1.70685 1.30006 0.98663 1.26591 0.92774 0.98577 0.98559 0.91381 0.91396 0.89838 0.89834 0.83238 0.80409 0.78824 0.80999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.45 0.28 -56.70 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.66 4.97 29.85 0.15 1.81 16 10 C -0.08 -3.34 5.16 30.60 0.16 -3.18 16 11 C -0.09 -3.36 5.55 71.98 0.40 -2.96 16 12 S 0.02 0.76 22.16 -56.49 -1.25 -0.49 16 13 C 0.20 6.52 8.26 180.52 1.49 8.01 16 14 N -0.33 -10.34 12.34 -58.68 -0.72 -11.06 16 15 N -0.46 -10.27 7.34 -51.92 -0.38 -10.66 16 16 H 0.46 6.29 8.13 -213.12 -1.73 4.56 16 17 C 0.34 7.88 7.84 136.87 1.07 8.95 16 18 C -0.10 -1.69 5.89 -19.99 -0.12 -1.80 16 19 C -0.03 -0.40 9.82 22.71 0.22 -0.18 16 20 C -0.16 -1.22 10.10 22.33 0.23 -0.99 16 21 C 0.12 0.99 11.17 84.71 0.95 1.94 16 22 N -0.50 -6.84 10.35 -194.81 -2.02 -8.86 16 23 C 0.13 1.69 10.87 85.00 0.92 2.62 16 24 N -0.53 -15.46 10.94 -190.19 -2.08 -17.54 16 25 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 26 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 27 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 28 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.08 3.05 8.14 -2.39 -0.02 3.04 16 31 H 0.08 3.05 8.14 -2.39 -0.02 3.04 16 32 H 0.15 2.09 7.93 -2.91 -0.02 2.06 16 33 H 0.18 0.17 8.06 -2.91 -0.02 0.14 16 34 H 0.19 0.30 8.06 -2.91 -0.02 0.27 16 35 H 0.17 1.41 7.22 -2.91 -0.02 1.39 16 Total: -1.00 -73.23 325.79 1.41 -71.82 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -0.61 Total: 3.16 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 6.17 Total: -15.94 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -4.92 Total: -104.81 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -1.25 Total: -0.49 kcal Total: -73.23 1.41 -71.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122473882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.134 kcal (2) G-P(sol) polarization free energy of solvation -73.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds