Wall clock time and date at job start Tue Mar 31 2020 06:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99642 * 2 1 4 4 H 1.48502 * 109.47153 * 270.00049 * 3 2 1 5 5 H 1.48497 * 109.47207 * 30.00286 * 3 2 1 6 6 H 1.48505 * 109.46969 * 150.00421 * 3 2 1 7 7 C 1.37868 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00224 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47250 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47115 * 179.97438 * 10 9 7 12 12 S 1.81397 * 109.46867 * 179.97438 * 11 10 9 13 13 C 1.76210 * 102.99666 * 180.02562 * 12 11 10 14 14 N 1.31391 * 125.49143 * 359.97438 * 13 12 11 15 15 N 1.40421 * 106.93155 * 180.02562 * 14 13 12 16 16 H 0.97006 * 126.81215 * 180.02562 * 15 14 13 17 17 C 1.35166 * 106.37972 * 359.97438 * 15 14 13 18 18 C 1.48000 * 126.02751 * 180.02562 * 17 15 14 19 19 C 1.39445 * 119.73924 * 179.97438 * 18 17 15 20 20 C 1.38401 * 119.05698 * 179.97438 * 19 18 17 21 21 C 1.38776 * 118.51937 * 0.02562 * 20 19 18 22 22 C 1.38324 * 119.37922 * 0.25390 * 21 20 19 23 23 N 1.31694 * 120.91349 * 359.44816 * 22 21 20 24 24 N 1.31798 * 107.94939 * 0.26524 * 17 15 14 25 25 H 0.97000 * 120.00029 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47116 * 59.99717 * 9 7 2 27 27 H 1.09005 * 109.46908 * 299.99844 * 9 7 2 28 28 H 1.08999 * 109.47341 * 59.99795 * 10 9 7 29 29 H 1.08997 * 109.47136 * 300.00012 * 10 9 7 30 30 H 1.08999 * 109.46826 * 59.99918 * 11 10 9 31 31 H 1.08997 * 109.47486 * 300.00236 * 11 10 9 32 32 H 1.08000 * 120.46948 * 359.97438 * 19 18 17 33 33 H 1.08010 * 120.74042 * 180.02562 * 20 19 18 34 34 H 1.08002 * 120.30691 * 179.97438 * 21 20 19 35 35 H 1.08007 * 119.54027 * 179.72858 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 16 2.6592 -6.3658 -0.0007 13 6 1.6118 -7.7828 -0.0006 14 7 0.2981 -7.7603 0.0004 15 7 -0.1338 -9.0965 0.0007 16 1 -1.0516 -9.4107 0.0010 17 6 0.9829 -9.8580 -0.0008 18 6 1.0278 -11.3373 -0.0016 19 6 2.2589 -11.9920 -0.0037 20 6 2.2844 -13.3758 -0.0039 21 6 1.0774 -14.0607 -0.0026 22 6 -0.1076 -13.3473 -0.0065 23 7 -0.1046 -12.0304 -0.0005 24 7 2.0249 -9.0509 0.0040 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8905 30 1 0.8534 -5.0450 -0.8896 31 1 0.8540 -5.0446 0.8903 32 1 3.1795 -11.4273 -0.0050 33 1 3.2227 -13.9107 -0.0050 34 1 1.0636 -15.1407 -0.0032 35 1 -1.0485 -13.8777 -0.0100 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122712245.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:24 Heat of formation + Delta-G solvation = 83.744853 kcal Electronic energy + Delta-G solvation = -18508.138820 eV Core-core repulsion = 15439.712404 eV Total energy + Delta-G solvation = -3068.426416 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 6.73 seconds Orbital eigenvalues (eV) -43.28265 -40.99040 -36.39410 -34.24632 -34.10486 -33.80372 -33.29106 -31.15722 -29.42099 -25.81551 -25.41110 -24.81440 -23.86890 -22.46446 -21.86867 -19.77521 -18.56308 -17.89662 -17.57650 -17.06506 -16.95358 -16.71721 -16.55620 -16.20572 -15.49565 -14.99986 -14.96846 -14.47282 -14.14757 -13.72128 -13.70732 -13.50659 -12.89771 -12.84062 -12.76520 -12.40783 -12.04535 -11.90936 -11.63805 -11.54848 -11.48490 -11.26579 -11.09621 -10.94885 -10.72546 -10.54940 -9.97803 -8.84325 -8.19348 -6.30500 -0.60294 -0.01510 0.23504 0.55339 0.97917 1.42425 1.43758 1.49839 1.55059 1.59407 2.42672 2.51659 2.78386 3.14302 3.42974 3.72774 3.96585 3.98665 4.01888 4.03515 4.13705 4.38008 4.52184 4.54785 4.78384 4.78886 4.81416 4.95120 5.08719 5.13909 5.18923 5.50512 5.61485 5.67980 5.83227 5.83791 6.22302 6.52432 6.73818 6.85698 7.38698 8.92577 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.061461 B = 0.002263 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.464967 B =12370.059287 C =12799.773652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.031 3.969 10 C -0.081 4.081 11 C -0.095 4.095 12 S 0.031 5.969 13 C 0.200 3.800 14 N -0.332 5.332 15 N -0.450 5.450 16 H 0.458 0.542 17 C 0.342 3.658 18 C 0.146 3.854 19 C -0.119 4.119 20 C -0.072 4.072 21 C -0.135 4.135 22 C 0.096 3.904 23 N -0.497 5.497 24 N -0.519 5.519 25 H 0.263 0.737 26 H -0.004 1.004 27 H -0.004 1.004 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.178 0.822 34 H 0.183 0.817 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 -32.891 -0.034 33.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.008 4.008 10 C -0.121 4.121 11 C -0.244 4.244 12 S 0.259 5.741 13 C -0.190 4.190 14 N -0.167 5.167 15 N -0.170 5.170 16 H 0.307 0.693 17 C 0.064 3.936 18 C 0.009 3.991 19 C -0.141 4.141 20 C -0.097 4.097 21 C -0.155 4.155 22 C -0.063 4.063 23 N -0.208 5.208 24 N -0.251 5.251 25 H 0.072 0.928 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.195 0.805 34 H 0.200 0.800 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.117 -31.683 -0.018 31.836 hybrid contribution -1.417 0.373 -0.010 1.465 sum 1.700 -31.310 -0.028 31.356 Atomic orbital electron populations 1.70108 1.07844 1.27794 1.51678 1.26008 0.95793 1.03482 0.94749 0.85410 0.78681 0.78251 0.78486 1.19779 1.20899 1.18541 1.21672 0.93783 0.91986 1.50516 0.91653 1.18973 0.94172 0.92316 0.95347 1.21221 0.98203 0.90174 1.02474 1.23687 1.00163 0.94789 1.05795 1.85419 1.07211 0.89384 1.92093 1.26289 0.92877 0.98204 1.01595 1.78478 1.11669 0.97183 1.29361 1.47834 1.10797 1.02929 1.55419 0.69324 1.22261 0.82557 0.92972 0.95845 1.18097 0.91485 0.85988 1.03512 1.22262 0.97847 0.96602 0.97426 1.22090 1.01187 0.92369 0.94102 1.22848 0.92217 1.03937 0.96540 1.23353 1.00959 0.87553 0.94409 1.67352 1.29277 1.11542 1.12636 1.70623 1.29493 0.98637 1.26358 0.92789 0.98591 0.98593 0.91319 0.91292 0.89875 0.89877 0.83462 0.80488 0.79988 0.78897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.54 -30.92 9.11 25.60 0.23 -30.69 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.03 1.65 4.97 29.85 0.15 1.80 16 10 C -0.08 -3.37 5.16 30.60 0.16 -3.21 16 11 C -0.10 -3.52 5.55 71.98 0.40 -3.12 16 12 S 0.03 1.02 22.17 -56.49 -1.25 -0.23 16 13 C 0.20 6.89 8.26 180.52 1.49 8.38 16 14 N -0.33 -11.37 12.34 -58.68 -0.72 -12.09 16 15 N -0.45 -12.41 7.45 -51.90 -0.39 -12.80 16 16 H 0.46 9.94 8.96 -213.10 -1.91 8.03 16 17 C 0.34 9.32 7.91 136.88 1.08 10.40 16 18 C 0.15 2.99 6.75 41.88 0.28 3.27 16 19 C -0.12 -1.83 9.73 22.60 0.22 -1.61 16 20 C -0.07 -0.53 10.16 22.44 0.23 -0.30 16 21 C -0.14 -0.65 10.11 22.42 0.23 -0.42 16 22 C 0.10 0.88 11.17 84.73 0.95 1.83 16 23 N -0.50 -8.59 10.29 -185.00 -1.90 -10.50 16 24 N -0.52 -16.43 10.84 -190.18 -2.06 -18.49 16 25 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 28 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 32 H 0.15 2.36 7.84 -2.91 -0.02 2.34 16 33 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 34 H 0.18 -0.55 8.06 -2.91 -0.02 -0.57 16 35 H 0.19 0.47 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -73.94 327.46 1.07 -72.87 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -0.79 Total: 5.18 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 5.88 Total: -13.36 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -4.79 Total: -111.09 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -1.25 Total: -0.23 kcal Total: -73.94 1.07 -72.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122712245.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.615 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.73 seconds