Wall clock time and date at job start Tue Mar 31 2020 07:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38385 * 119.92287 * 2 1 4 4 C 1.38336 * 120.28874 * 180.02562 * 3 2 1 5 5 C 1.37984 * 120.14495 * 359.97438 * 4 3 2 6 6 C 1.39553 * 119.85359 * 359.97368 * 5 4 3 7 7 C 1.47838 * 120.14240 * 180.02562 * 6 5 4 8 8 N 1.31264 * 126.46317 * 164.97711 * 7 6 5 9 9 N 1.28512 * 109.96062 * 180.02562 * 8 7 6 10 10 C 1.31441 * 110.07843 * 359.97438 * 9 8 7 11 11 S 1.76205 * 126.38241 * 180.02562 * 10 9 8 12 12 C 1.81004 * 99.99806 * 359.97438 * 11 10 9 13 13 C 1.50702 * 109.46850 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99983 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99866 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00413 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99919 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47362 * 89.99925 * 17 15 13 19 19 H 1.48499 * 109.47032 * 209.99864 * 17 15 13 20 20 H 1.48496 * 109.47017 * 329.99416 * 17 15 13 21 21 N 1.36564 * 107.23568 * 0.02562 * 10 9 8 22 22 N 1.36594 * 127.17229 * 179.97438 * 21 10 9 23 23 C 1.37930 * 119.92846 * 180.27351 * 2 1 3 24 24 H 1.09001 * 109.47227 * 90.00241 * 1 2 3 25 25 H 1.08999 * 109.47078 * 210.00398 * 1 2 3 26 26 H 1.08996 * 109.47110 * 330.00003 * 1 2 3 27 27 H 1.07993 * 119.85941 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.93106 * 179.97438 * 4 3 2 29 29 H 1.08003 * 120.06921 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47003 * 299.99840 * 12 11 10 31 31 H 1.09001 * 109.47058 * 60.00049 * 12 11 10 32 32 H 0.96992 * 120.00585 * 179.97438 * 16 15 13 33 33 H 1.00895 * 111.00473 * 270.02190 * 22 21 10 34 34 H 1.00907 * 111.00305 * 33.97783 * 22 21 10 35 35 H 1.08003 * 120.07760 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2082 -0.0005 5 6 4.2812 0.0194 -0.0005 6 6 3.5912 -1.1936 0.0006 7 6 4.3353 -2.4710 0.0011 8 7 3.8471 -3.6581 0.2758 9 7 4.7720 -4.5453 0.1819 10 6 5.9079 -3.9787 -0.1591 11 16 7.4500 -4.7944 -0.4067 12 6 6.9612 -6.5024 -0.0601 13 6 8.1557 -7.4081 -0.2153 14 1 9.1136 -6.9952 -0.4952 15 6 8.0256 -8.7636 0.0002 16 7 9.0679 -9.5541 -0.1356 17 14 6.3686 -9.4777 0.4838 18 1 5.6146 -9.8516 -0.7397 19 1 6.5758 -10.6836 1.3253 20 1 5.5981 -8.4658 1.2502 21 7 5.6702 -2.6399 -0.2858 22 7 6.5703 -1.6704 -0.6263 23 6 2.1952 -1.1954 -0.0057 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6538 2.1326 0.0004 28 1 4.1136 2.1476 -0.0009 29 1 5.3612 0.0278 -0.0005 30 1 6.5819 -6.5720 0.9594 31 1 6.1821 -6.8063 -0.7592 32 1 8.9765 -10.5077 0.0163 33 1 7.0198 -1.2905 0.1932 34 1 7.2516 -2.0235 -1.2815 35 1 1.6553 -2.1307 -0.0106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126058760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:02 Heat of formation + Delta-G solvation = 117.503961 kcal Electronic energy + Delta-G solvation = -19457.472276 eV Core-core repulsion = 16390.509765 eV Total energy + Delta-G solvation = -3066.962511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 4.67 seconds Orbital eigenvalues (eV) -42.71502 -39.33503 -36.46629 -33.35734 -33.18572 -32.13677 -29.79715 -29.59964 -29.07094 -27.12757 -23.90365 -23.20773 -22.45950 -21.50135 -20.71648 -18.59373 -17.49679 -17.01556 -16.68173 -16.36964 -15.76750 -15.21636 -14.91193 -14.33225 -13.96473 -13.95289 -13.64172 -13.25255 -12.93582 -12.53101 -12.45774 -12.32870 -11.93290 -11.65033 -11.31339 -11.25428 -10.90899 -10.86644 -10.50812 -10.30475 -10.21854 -9.92148 -9.68218 -9.46135 -8.93056 -8.82089 -8.63430 -7.14676 -6.29712 -4.36076 0.70352 1.21797 1.42875 1.96108 2.26699 2.90616 2.96781 3.24287 3.32107 3.39256 3.69136 3.92710 4.27113 4.56898 4.62515 4.66129 4.97573 5.03561 5.09901 5.16102 5.31265 5.38921 5.45480 5.51778 5.60161 5.78927 5.91339 5.95845 6.21141 6.34018 6.38471 6.42120 6.56532 6.59746 6.75882 7.24094 7.36230 8.11560 8.64853 8.70859 9.25036 10.81103 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031379 B = 0.003499 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.114319 B = 8001.367114 C = 8845.664837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.112 4.112 4 C -0.120 4.120 5 C -0.098 4.098 6 C -0.002 4.002 7 C 0.232 3.768 8 N -0.267 5.267 9 N -0.281 5.281 10 C 0.143 3.857 11 S -0.021 6.021 12 C 0.040 3.960 13 C -0.530 4.530 14 H 0.084 0.916 15 C 0.089 3.911 16 N -0.886 5.886 17 Si 0.874 3.126 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.257 1.257 21 N -0.311 5.311 22 N -0.581 5.581 23 C -0.080 4.080 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.123 0.877 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.271 0.729 33 H 0.362 0.638 34 H 0.378 0.622 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.011 22.534 -0.050 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.131 4.131 4 C -0.138 4.138 5 C -0.118 4.118 6 C -0.004 4.004 7 C -0.034 4.034 8 N -0.108 5.108 9 N -0.127 5.127 10 C -0.230 4.230 11 S 0.208 5.792 12 C -0.108 4.108 13 C -0.570 4.570 14 H 0.102 0.898 15 C -0.117 4.117 16 N -0.522 5.522 17 Si 0.700 3.300 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.181 1.181 21 N -0.094 5.094 22 N -0.213 5.213 23 C -0.100 4.100 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.141 0.859 28 H 0.144 0.856 29 H 0.153 0.847 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.180 0.820 34 H 0.197 0.803 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.439 22.033 -0.261 24.827 hybrid contribution 0.004 -0.570 0.533 0.780 sum -11.435 21.463 0.273 24.321 Atomic orbital electron populations 1.20791 0.90810 1.02956 1.02475 1.19815 0.96293 0.92646 1.00270 1.21156 0.94314 0.97491 1.00122 1.21025 0.94145 0.97769 1.00839 1.21410 1.00764 0.91034 0.98572 1.17404 0.92185 0.87686 1.03161 1.22714 0.79747 0.95991 1.04986 1.74379 1.22867 0.95679 1.17920 1.74830 0.95534 1.23020 1.19282 1.28135 1.04431 0.84708 1.05776 1.85486 0.98632 1.09217 1.85894 1.21705 1.01241 0.86593 1.01278 1.20339 0.94708 0.91159 1.50751 0.89801 1.24757 0.97051 0.96158 0.93773 1.69840 1.29815 1.04990 1.47564 0.86833 0.84032 0.79461 0.79710 1.19551 1.20658 1.18137 1.45172 1.07453 1.03089 1.53729 1.59872 1.21737 1.21599 1.18081 1.21096 0.92222 0.98534 0.98164 0.91076 0.91234 0.91496 0.85943 0.85623 0.84669 0.92738 0.93174 0.91909 0.82048 0.80313 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.09 -0.89 5.87 -104.68 -0.61 -1.50 16 3 C -0.11 -0.97 9.69 -39.49 -0.38 -1.36 16 4 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 5 C -0.10 -1.07 9.47 -39.18 -0.37 -1.44 16 6 C 0.00 -0.02 5.87 -104.97 -0.62 -0.64 16 7 C 0.23 3.86 7.80 -153.76 -1.20 2.66 16 8 N -0.27 -5.26 11.97 32.59 0.39 -4.87 16 9 N -0.28 -6.07 11.59 30.71 0.36 -5.71 16 10 C 0.14 2.75 8.13 -88.18 -0.72 2.03 16 11 S -0.02 -0.42 21.89 -107.50 -2.35 -2.77 16 12 C 0.04 0.97 4.05 36.01 0.15 1.11 16 13 C -0.53 -14.54 9.68 -34.44 -0.33 -14.87 16 14 H 0.08 2.45 7.95 -52.49 -0.42 2.03 16 15 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 16 N -0.89 -26.06 13.96 55.43 0.77 -25.28 16 17 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 21 N -0.31 -4.88 3.83 -10.37 -0.04 -4.92 16 22 N -0.58 -6.29 8.21 60.35 0.50 -5.79 16 23 C -0.08 -0.98 9.35 -39.19 -0.37 -1.35 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 27 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 28 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 29 H 0.14 1.30 5.73 -52.48 -0.30 1.00 16 30 H 0.05 1.35 7.20 -51.92 -0.37 0.97 16 31 H 0.05 1.23 7.57 -51.92 -0.39 0.83 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 33 H 0.36 3.01 8.91 -181.37 -1.62 1.39 16 34 H 0.38 3.72 8.80 -181.36 -1.60 2.12 16 35 H 0.13 1.69 7.94 -52.48 -0.42 1.27 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -32.35 317.94 -11.23 -43.59 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.39 Total: -0.65 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -4.59 Total: -14.89 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 1.98 Total: -46.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -2.35 Total: -2.77 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.35 -11.23 -43.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126058760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.090 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.68 seconds