Wall clock time and date at job start Tue Mar 31 2020 07:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38385 * 119.92287 * 2 1 4 4 C 1.38336 * 120.28874 * 180.02562 * 3 2 1 5 5 C 1.37984 * 120.14495 * 359.97438 * 4 3 2 6 6 C 1.39553 * 119.85359 * 359.97368 * 5 4 3 7 7 C 1.47838 * 120.14240 * 180.02562 * 6 5 4 8 8 N 1.31264 * 126.46317 * 164.97711 * 7 6 5 9 9 N 1.28512 * 109.96062 * 180.02562 * 8 7 6 10 10 C 1.31441 * 110.07843 * 359.97438 * 9 8 7 11 11 S 1.76205 * 126.38241 * 180.02562 * 10 9 8 12 12 C 1.81004 * 99.99806 * 359.97438 * 11 10 9 13 13 C 1.50702 * 109.46850 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99983 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99866 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00413 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99919 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47362 * 89.99925 * 17 15 13 19 19 H 1.48499 * 109.47032 * 209.99864 * 17 15 13 20 20 H 1.48496 * 109.47017 * 329.99416 * 17 15 13 21 21 N 1.36564 * 107.23568 * 0.02562 * 10 9 8 22 22 N 1.36594 * 127.17229 * 179.97438 * 21 10 9 23 23 C 1.37930 * 119.92846 * 180.27351 * 2 1 3 24 24 H 1.09001 * 109.47227 * 90.00241 * 1 2 3 25 25 H 1.08999 * 109.47078 * 210.00398 * 1 2 3 26 26 H 1.08996 * 109.47110 * 330.00003 * 1 2 3 27 27 H 1.07993 * 119.85941 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.93106 * 179.97438 * 4 3 2 29 29 H 1.08003 * 120.06921 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47003 * 299.99840 * 12 11 10 31 31 H 1.09001 * 109.47058 * 60.00049 * 12 11 10 32 32 H 0.96992 * 120.00585 * 179.97438 * 16 15 13 33 33 H 1.00895 * 111.00473 * 270.02190 * 22 21 10 34 34 H 1.00907 * 111.00305 * 33.97783 * 22 21 10 35 35 H 1.08003 * 120.07760 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2082 -0.0005 5 6 4.2812 0.0194 -0.0005 6 6 3.5912 -1.1936 0.0006 7 6 4.3353 -2.4710 0.0011 8 7 3.8471 -3.6581 0.2758 9 7 4.7720 -4.5453 0.1819 10 6 5.9079 -3.9787 -0.1591 11 16 7.4500 -4.7944 -0.4067 12 6 6.9612 -6.5024 -0.0601 13 6 8.1557 -7.4081 -0.2153 14 1 9.1136 -6.9952 -0.4952 15 6 8.0256 -8.7636 0.0002 16 7 9.0679 -9.5541 -0.1356 17 14 6.3686 -9.4777 0.4838 18 1 5.6146 -9.8516 -0.7397 19 1 6.5758 -10.6836 1.3253 20 1 5.5981 -8.4658 1.2502 21 7 5.6702 -2.6399 -0.2858 22 7 6.5703 -1.6704 -0.6263 23 6 2.1952 -1.1954 -0.0057 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6538 2.1326 0.0004 28 1 4.1136 2.1476 -0.0009 29 1 5.3612 0.0278 -0.0005 30 1 6.5819 -6.5720 0.9594 31 1 6.1821 -6.8063 -0.7592 32 1 8.9765 -10.5077 0.0163 33 1 7.0198 -1.2905 0.1932 34 1 7.2516 -2.0235 -1.2815 35 1 1.6553 -2.1307 -0.0106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126058760.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:57 Heat of formation + Delta-G solvation = 98.280778 kcal Electronic energy + Delta-G solvation = -19458.305856 eV Core-core repulsion = 16390.509765 eV Total energy + Delta-G solvation = -3067.796091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.05994 -40.13661 -37.65046 -35.31308 -34.22837 -33.02163 -31.66502 -30.87622 -30.33068 -27.81288 -25.26002 -24.51458 -24.15940 -22.43842 -21.76296 -19.91332 -19.03298 -18.60506 -17.79713 -17.55421 -16.79296 -16.39724 -16.14518 -15.93987 -15.47664 -14.86926 -14.70959 -14.59668 -14.47453 -14.00620 -13.25935 -13.14328 -13.10732 -12.90118 -12.77309 -12.64493 -12.35267 -12.13662 -12.09161 -11.88016 -11.75870 -11.49672 -11.33359 -10.94484 -10.78955 -9.77708 -9.58917 -8.66291 -8.46131 -6.56951 -0.29489 -0.07012 0.44210 0.73662 1.03855 1.19378 1.31346 1.36206 1.46451 1.60301 2.24014 2.84527 2.86751 2.88069 3.50246 3.75149 3.99632 4.10938 4.17457 4.24447 4.41253 4.51728 4.58999 4.61392 4.70483 4.79132 4.87318 4.95653 5.04496 5.17957 5.31428 5.43078 5.52030 5.54276 5.63594 5.93710 6.01363 6.23806 6.45679 7.07997 7.31328 8.68157 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.031379 B = 0.003499 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.114319 B = 8001.367114 C = 8845.664837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.101 4.101 4 C -0.116 4.116 5 C -0.098 4.098 6 C -0.036 4.036 7 C 0.252 3.748 8 N -0.307 5.307 9 N -0.321 5.321 10 C 0.125 3.875 11 S 0.021 5.979 12 C 0.034 3.966 13 C -0.535 4.535 14 H 0.057 0.943 15 C 0.040 3.960 16 N -0.926 5.926 17 Si 0.934 3.066 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.257 1.257 21 N -0.304 5.304 22 N -0.567 5.567 23 C -0.096 4.096 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.157 0.843 28 H 0.160 0.840 29 H 0.146 0.854 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.276 0.724 33 H 0.380 0.620 34 H 0.386 0.614 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.406 25.997 -0.025 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.119 4.119 4 C -0.133 4.133 5 C -0.118 4.118 6 C -0.039 4.039 7 C -0.016 4.016 8 N -0.148 5.148 9 N -0.166 5.166 10 C -0.251 4.251 11 S 0.250 5.750 12 C -0.115 4.115 13 C -0.574 4.574 14 H 0.075 0.925 15 C -0.163 4.163 16 N -0.564 5.564 17 Si 0.757 3.243 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.181 1.181 21 N -0.085 5.085 22 N -0.202 5.202 23 C -0.116 4.116 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.174 0.826 28 H 0.177 0.823 29 H 0.164 0.836 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.200 0.800 34 H 0.206 0.794 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.828 25.515 -0.234 28.559 hybrid contribution 0.402 -1.340 0.492 1.483 sum -12.426 24.175 0.258 27.182 Atomic orbital electron populations 1.20852 0.89062 1.03819 1.03270 1.20126 0.97658 0.92171 0.99450 1.21618 0.94543 0.98245 0.97542 1.21438 0.94485 0.98218 0.99185 1.21606 1.01434 0.90731 0.98019 1.17577 0.92622 0.87132 1.06569 1.23335 0.79864 0.96360 1.02005 1.74287 1.23234 0.96794 1.20476 1.74701 0.96645 1.24808 1.20450 1.27965 1.03721 0.86379 1.07004 1.85018 0.98288 1.05419 1.86296 1.21400 0.99626 0.89870 1.00578 1.20496 0.94758 0.92034 1.50118 0.92524 1.25562 1.00341 0.96686 0.93714 1.69942 1.31871 1.05600 1.48953 0.85882 0.79828 0.78856 0.79693 1.18809 1.19507 1.18150 1.45193 1.08035 1.02586 1.52698 1.60004 1.21817 1.19327 1.19017 1.21145 0.92035 0.99201 0.99262 0.90234 0.91711 0.89363 0.82557 0.82270 0.83641 0.93614 0.93842 0.91451 0.80030 0.79415 0.86332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.09 -1.62 5.87 -19.90 -0.12 -1.73 16 3 C -0.10 -1.33 9.69 22.33 0.22 -1.11 16 4 C -0.12 -1.57 10.03 22.23 0.22 -1.35 16 5 C -0.10 -1.87 9.47 22.53 0.21 -1.66 16 6 C -0.04 -0.94 5.87 -20.09 -0.12 -1.06 16 7 C 0.25 8.36 7.80 136.21 1.06 9.42 16 8 N -0.31 -12.44 11.97 -50.80 -0.61 -13.05 16 9 N -0.32 -14.19 11.59 -56.75 -0.66 -14.85 16 10 C 0.13 4.81 8.13 179.50 1.46 6.27 16 11 S 0.02 0.83 21.89 -56.49 -1.24 -0.41 16 12 C 0.03 1.68 4.05 71.24 0.29 1.97 16 13 C -0.53 -30.10 9.68 25.60 0.25 -29.85 16 14 H 0.06 3.42 7.95 -2.91 -0.02 3.40 16 15 C 0.04 2.25 5.47 84.65 0.46 2.72 16 16 N -0.93 -55.57 13.96 21.45 0.30 -55.27 16 17 Si 0.93 44.37 27.47 68.60 1.88 46.25 16 18 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 21 N -0.30 -9.31 3.83 -186.73 -0.72 -10.03 16 22 N -0.57 -11.16 8.21 37.02 0.30 -10.86 16 23 C -0.10 -2.31 9.35 22.53 0.21 -2.10 16 24 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 26 H 0.09 0.68 8.08 -2.39 -0.02 0.66 16 27 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 28 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 29 H 0.15 2.35 5.73 -2.91 -0.02 2.34 16 30 H 0.05 2.31 7.20 -2.40 -0.02 2.29 16 31 H 0.04 2.17 7.57 -2.39 -0.02 2.15 16 32 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.38 5.36 8.91 -210.57 -1.88 3.48 16 34 H 0.39 6.82 8.80 -210.55 -1.85 4.96 16 35 H 0.12 3.11 7.94 -2.91 -0.02 3.09 16 Total: -1.00 -72.58 317.94 1.50 -71.09 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -2.64 Total: 6.23 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 4.86 Total: -19.12 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -1.38 Total: -104.05 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.25 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -1.24 Total: -0.41 kcal Total: -72.58 1.50 -71.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126058760.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.369 kcal (2) G-P(sol) polarization free energy of solvation -72.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds