Wall clock time and date at job start Tue Mar 31 2020 08:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00027 * 2 1 4 4 H 1.08002 * 119.99759 * 202.37509 * 3 2 1 5 5 C 1.38813 * 120.00448 * 22.36459 * 3 2 1 6 6 N 1.31622 * 119.99696 * 11.33688 * 5 3 2 7 7 Si 1.86793 * 120.00309 * 191.33175 * 5 3 2 8 8 H 1.48498 * 109.47249 * 60.00428 * 7 5 3 9 9 H 1.48503 * 109.47089 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47310 * 300.00200 * 7 5 3 11 11 C 1.46500 * 119.99825 * 179.97438 * 2 1 3 12 12 C 1.50704 * 109.47041 * 270.00513 * 11 2 1 13 13 C 1.38830 * 120.35398 * 270.01977 * 12 11 2 14 14 C 1.38380 * 118.48468 * 179.97438 * 13 12 11 15 15 C 1.38915 * 119.11218 * 0.02562 * 14 13 12 16 16 O 1.35673 * 119.68523 * 180.02562 * 15 14 13 17 17 C 1.42905 * 117.00348 * 179.97438 * 16 15 14 18 18 C 1.52991 * 109.47321 * 179.97438 * 17 16 15 19 19 F 1.39909 * 109.47141 * 59.99890 * 18 17 16 20 20 F 1.39900 * 109.47351 * 179.97438 * 18 17 16 21 21 F 1.39904 * 109.47248 * 300.00068 * 18 17 16 22 22 N 1.32245 * 120.63175 * 0.02562 * 15 14 13 23 23 C 1.31969 * 121.64637 * 359.97438 * 22 15 14 24 24 H 1.08994 * 109.47375 * 274.21255 * 1 2 3 25 25 H 1.09001 * 109.47104 * 34.20915 * 1 2 3 26 26 H 1.09004 * 109.47090 * 154.20685 * 1 2 3 27 27 H 0.97000 * 119.99902 * 179.97438 * 6 5 3 28 28 H 1.08994 * 109.47286 * 150.00606 * 11 2 1 29 29 H 1.08996 * 109.47146 * 29.99976 * 11 2 1 30 30 H 1.08003 * 120.75955 * 0.02562 * 13 12 11 31 31 H 1.08004 * 120.43890 * 180.02562 * 14 13 12 32 32 H 1.09001 * 109.46396 * 299.99609 * 17 16 15 33 33 H 1.09004 * 109.46850 * 59.99528 * 17 16 15 34 34 H 1.08002 * 119.57718 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2210 -0.3561 5 6 1.5340 2.3429 0.4574 6 7 0.3844 2.2689 1.0941 7 14 2.3370 4.0046 0.1694 8 1 2.4917 4.2335 -1.2896 9 1 1.4855 5.0733 0.7510 10 1 3.6724 4.0283 0.8185 11 6 2.1975 -1.2688 0.0006 12 6 2.4485 -1.7032 1.4216 13 6 3.6027 -1.3062 2.0831 14 6 3.7938 -1.7270 3.3875 15 6 2.8303 -2.5282 3.9871 16 8 3.0055 -2.9470 5.2656 17 6 1.9788 -3.7681 5.8259 18 6 2.3499 -4.1391 7.2630 19 9 2.4835 -2.9739 8.0258 20 9 1.3445 -4.9424 7.8117 21 9 3.5608 -4.8397 7.2660 22 7 1.7439 -2.8866 3.3237 23 6 1.5339 -2.5011 2.0791 24 1 -0.3634 0.0755 1.0248 25 1 -0.3633 0.8499 -0.5778 26 1 -0.3633 -0.9253 -0.4472 27 1 -0.0456 3.0774 1.4141 28 1 3.1499 -1.1387 -0.5132 29 1 1.6084 -2.0286 -0.5129 30 1 4.3344 -0.6824 1.5913 31 1 4.6801 -1.4364 3.9319 32 1 1.0353 -3.2223 5.8233 33 1 1.8750 -4.6761 5.2318 34 1 0.6345 -2.8131 1.5689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126601560.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:12 Heat of formation + Delta-G solvation = -146.658526 kcal Electronic energy + Delta-G solvation = -22760.598802 eV Core-core repulsion = 18665.278983 eV Total energy + Delta-G solvation = -4095.319819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = -1.31 seconds Orbital eigenvalues (eV) -51.24011 -48.77777 -48.71885 -41.62908 -39.33414 -37.31604 -34.00015 -33.17797 -32.08641 -30.62028 -27.99392 -27.23185 -25.25006 -24.06040 -23.73101 -22.18216 -20.18305 -19.77490 -19.08124 -18.96343 -18.65269 -17.33352 -17.17331 -16.95923 -16.12622 -15.68027 -15.61278 -15.48308 -15.38680 -15.15940 -15.03933 -14.88708 -14.87381 -14.69482 -14.33165 -14.22379 -13.87645 -13.09589 -12.93626 -12.81999 -12.69948 -12.55679 -12.37465 -12.09478 -11.94555 -11.87522 -10.73802 -10.67196 -10.58025 -9.39448 -8.78258 -7.81290 -5.27852 0.24456 0.37777 1.11497 1.48846 1.50389 1.56259 1.91495 2.52164 2.62352 2.81162 2.88610 3.15830 3.35491 3.36416 3.89672 3.95622 4.03619 4.07885 4.14741 4.21726 4.40681 4.62282 4.88971 4.91411 5.04071 5.07085 5.38504 5.47283 5.54206 5.66696 5.77517 6.06674 6.34319 6.82650 7.17054 7.88715 8.31377 9.21648 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.024011 B = 0.003583 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.859528 B = 7812.631511 C = 8122.238951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.607 5.607 3 C -0.256 4.256 4 H 0.078 0.922 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.962 3.038 8 H -0.277 1.277 9 H -0.301 1.301 10 H -0.275 1.275 11 C 0.187 3.813 12 C -0.168 4.168 13 C -0.033 4.033 14 C -0.185 4.185 15 C 0.287 3.713 16 O -0.306 6.306 17 C 0.028 3.972 18 C 0.471 3.529 19 F -0.183 7.183 20 F -0.167 7.167 21 F -0.179 7.179 22 N -0.548 5.548 23 C 0.133 3.867 24 H -0.002 1.002 25 H 0.018 0.982 26 H 0.037 0.963 27 H 0.245 0.755 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.381 -13.993 6.780 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.328 5.328 3 C -0.387 4.387 4 H 0.096 0.904 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.791 3.209 8 H -0.203 1.203 9 H -0.228 1.228 10 H -0.201 1.201 11 C 0.061 3.939 12 C -0.173 4.173 13 C -0.060 4.060 14 C -0.206 4.206 15 C 0.109 3.891 16 O -0.215 6.215 17 C -0.049 4.049 18 C 0.417 3.583 19 F -0.165 7.165 20 F -0.148 7.148 21 F -0.161 7.161 22 N -0.271 5.271 23 C -0.022 4.022 24 H 0.016 0.984 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.165 0.835 31 H 0.172 0.828 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.870 -14.343 7.444 16.617 hybrid contribution 0.487 1.636 0.119 1.711 sum 4.357 -12.707 7.563 15.416 Atomic orbital electron populations 1.20575 0.82597 0.96392 0.97335 1.44315 1.02147 1.01390 1.84982 1.19551 0.98472 0.86197 1.34446 0.90411 1.25748 0.98344 1.01709 0.98783 1.70234 1.19271 1.27321 1.41665 0.85413 0.77687 0.79889 0.77909 1.20262 1.22752 1.20099 1.20008 0.97303 0.87241 0.89367 1.22028 0.95083 0.97784 1.02452 1.21500 0.97016 0.94598 0.92862 1.21194 1.01322 1.01840 0.96207 1.19665 0.91642 0.93766 0.84052 1.86117 1.44873 1.65714 1.24758 1.23654 0.92914 0.99465 0.88887 1.20048 0.74728 0.74701 0.88867 1.93219 1.95655 1.49016 1.78610 1.93228 1.60599 1.73991 1.87032 1.93214 1.46352 1.79544 1.96984 1.67160 1.20962 1.27734 1.11211 1.22408 0.98305 0.93310 0.88226 0.98399 0.96358 0.94444 0.94568 0.91469 0.90393 0.83501 0.82774 0.86758 0.85647 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.16 9.01 127.77 1.15 9.31 16 2 N -0.61 -27.84 2.91 -731.31 -2.13 -29.97 16 3 C -0.26 -13.08 9.67 84.03 0.81 -12.27 16 4 H 0.08 3.76 7.84 -2.91 -0.02 3.74 16 5 C -0.05 -2.73 5.13 84.86 0.44 -2.30 16 6 N -0.94 -54.31 10.59 21.65 0.23 -54.08 16 7 Si 0.96 43.64 29.57 68.60 2.03 45.67 16 8 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 9 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 11 C 0.19 6.55 5.86 85.63 0.50 7.06 16 12 C -0.17 -5.74 5.48 -19.77 -0.11 -5.85 16 13 C -0.03 -1.09 9.85 22.45 0.22 -0.87 16 14 C -0.19 -5.72 10.04 22.47 0.23 -5.50 16 15 C 0.29 9.13 7.49 84.79 0.63 9.77 16 16 O -0.31 -8.72 10.00 -89.90 -0.90 -9.62 16 17 C 0.03 0.62 5.27 71.98 0.38 1.00 16 18 C 0.47 10.03 3.32 71.98 0.24 10.27 16 19 F -0.18 -4.48 17.26 44.97 0.78 -3.71 16 20 F -0.17 -3.29 17.32 44.97 0.78 -2.51 16 21 F -0.18 -4.06 17.26 44.97 0.78 -3.28 16 22 N -0.55 -17.69 9.22 -308.96 -2.85 -20.54 16 23 C 0.13 4.32 10.85 84.63 0.92 5.24 16 24 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 25 H 0.02 0.92 7.19 -2.39 -0.02 0.90 16 26 H 0.04 1.41 7.84 -2.39 -0.02 1.39 16 27 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.07 2.21 7.98 -2.39 -0.02 2.19 16 29 H 0.08 2.31 7.81 -2.39 -0.02 2.29 16 30 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.11 2.49 8.10 -2.39 -0.02 2.47 16 33 H 0.13 2.39 8.10 -2.39 -0.02 2.37 16 34 H 0.17 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -61.84 312.19 5.25 -56.59 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.13 Total: 5.60 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 5.41 Total: 15.86 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -4.75 Total: -104.59 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.90 Total: -9.62 kcal Atomic # 9 Polarization: -11.83 SS G_CDS: 2.33 Total: -9.50 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -61.84 5.25 -56.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126601560.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.072 kcal (2) G-P(sol) polarization free energy of solvation -61.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.31 seconds