Wall clock time and date at job start Tue Mar 31 2020 05:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81400 * 102.99959 * 2 1 4 4 C 1.50706 * 109.46923 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.84849 * 269.72282 * 4 3 2 6 6 C 1.37938 * 120.15221 * 179.72351 * 5 4 3 7 7 C 1.39649 * 119.84188 * 0.57651 * 6 5 4 8 8 C 1.47726 * 120.14855 * 179.68233 * 7 6 5 9 9 O 1.21593 * 120.00340 * 137.94673 * 8 7 6 10 10 N 1.34779 * 120.00050 * 317.93804 * 8 7 6 11 11 C 1.36875 * 119.99631 * 2.09548 * 10 8 7 12 12 H 1.07995 * 120.00260 * 310.80944 * 11 10 8 13 13 C 1.39048 * 119.99611 * 130.81629 * 11 10 8 14 14 N 1.31364 * 119.99875 * 170.04380 * 13 11 10 15 15 Si 1.86801 * 120.00290 * 350.03884 * 13 11 10 16 16 H 1.48505 * 109.46939 * 95.21842 * 15 13 11 17 17 H 1.48494 * 109.47266 * 215.21967 * 15 13 11 18 18 H 1.48501 * 109.47028 * 335.21898 * 15 13 11 19 19 C 1.46492 * 120.00299 * 182.09467 * 10 8 7 20 20 C 1.47201 * 109.47113 * 84.60252 * 19 10 8 21 21 N 9.09519 * 163.14602 * 21.39625 * 3 1 2 22 22 C 1.39648 * 119.70146 * 359.70237 * 7 6 5 23 23 C 1.37939 * 119.84687 * 359.97438 * 22 7 6 24 24 H 1.09003 * 109.47076 * 60.00086 * 1 2 3 25 25 H 1.08996 * 109.46982 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47345 * 300.00144 * 1 2 3 27 27 H 1.08998 * 109.47239 * 299.99664 * 3 2 1 28 28 H 1.09002 * 109.47242 * 60.00128 * 3 2 1 29 29 H 1.08002 * 119.92474 * 0.02562 * 5 4 3 30 30 H 1.07994 * 120.08150 * 180.25500 * 6 5 4 31 31 H 0.97003 * 119.99784 * 179.97438 * 14 13 11 32 32 H 1.08992 * 109.47563 * 204.60524 * 19 10 8 33 33 H 1.09004 * 109.47338 * 324.60618 * 19 10 8 34 34 H 1.07996 * 120.07878 * 179.97438 * 22 7 6 35 35 H 1.07996 * 119.92609 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 0.0006 5 6 4.4026 2.0208 1.2011 6 6 5.7738 2.1706 1.2090 7 6 6.4712 2.2500 0.0017 8 6 7.9389 2.4174 0.0023 9 8 8.6233 1.7855 -0.7792 10 7 8.5195 3.2707 0.8691 11 6 7.7534 3.9501 1.7775 12 1 6.8671 4.4742 1.4518 13 6 8.1165 3.9654 3.1196 14 7 7.5021 4.7697 3.9571 15 14 9.4778 2.8423 3.7319 16 1 10.7636 3.5852 3.7463 17 1 9.1577 2.3803 5.1064 18 1 9.5944 1.6685 2.8298 19 6 9.9703 3.4712 0.8390 20 6 10.3048 4.4835 -0.1760 21 7 10.5626 5.2648 -0.9620 22 6 5.7747 2.1708 -1.2061 23 6 4.4043 2.0144 -1.1993 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8031 2.2371 -0.8900 28 1 1.8031 2.2371 0.8900 29 1 3.8615 1.9637 2.1341 30 1 6.3063 2.2315 2.1466 31 1 7.7552 4.7801 4.8935 32 1 10.3106 3.8111 1.8170 33 1 10.4620 2.5308 0.5899 34 1 6.3079 2.2319 -2.1433 35 1 3.8644 1.9526 -2.1327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126617485.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:37 Heat of formation + Delta-G solvation = 27.931780 kcal Electronic energy + Delta-G solvation = -20040.281859 eV Core-core repulsion = 16937.142455 eV Total energy + Delta-G solvation = -3103.139404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.74970 -38.13843 -36.03348 -34.92626 -32.61366 -32.21168 -30.53781 -29.21501 -28.46391 -26.66478 -25.01098 -22.17789 -21.80503 -19.53492 -18.62554 -17.33279 -16.40612 -16.05605 -15.65526 -15.25795 -14.93709 -14.68547 -14.15562 -14.03091 -13.80721 -13.68124 -13.47831 -13.04898 -12.98649 -12.84176 -12.56450 -12.41606 -12.27001 -11.89106 -11.73050 -11.45611 -11.19901 -11.08367 -10.60032 -10.49715 -10.21786 -10.13695 -9.52532 -8.97242 -8.47634 -8.21989 -8.11864 -7.74448 -6.65016 -4.44922 1.05536 1.89135 1.97899 2.53958 2.87897 3.04206 3.06293 3.11071 3.34378 3.50183 3.91448 4.20884 4.40084 4.55607 4.76411 4.87267 4.87527 4.95049 4.97606 5.35862 5.45560 5.49687 5.51434 5.55417 5.69112 5.87402 5.92273 6.06872 6.31593 6.51610 6.77107 6.92450 7.03986 7.05876 7.39106 7.77823 8.06153 8.09022 8.66624 8.97343 9.30099 10.42844 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.004592 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.733508 B = 6095.895476 C = 6916.816716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.254 6.254 3 C -0.039 4.039 4 C -0.073 4.073 5 C -0.116 4.116 6 C -0.046 4.046 7 C -0.089 4.089 8 C 0.538 3.462 9 O -0.576 6.576 10 N -0.459 5.459 11 C -0.351 4.351 12 H 0.108 0.892 13 C 0.072 3.928 14 N -0.852 5.852 15 Si 0.861 3.139 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.251 1.251 19 C 0.188 3.812 20 C 0.215 3.785 21 N -0.450 5.450 22 C -0.080 4.080 23 C -0.119 4.119 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.151 0.849 31 H 0.279 0.721 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.223 -6.806 -1.816 12.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.026 6.026 3 C -0.186 4.186 4 C -0.074 4.074 5 C -0.135 4.135 6 C -0.065 4.065 7 C -0.093 4.093 8 C 0.328 3.672 9 O -0.459 6.459 10 N -0.181 5.181 11 C -0.478 4.478 12 H 0.126 0.874 13 C -0.137 4.137 14 N -0.486 5.486 15 Si 0.686 3.314 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.175 1.175 19 C 0.062 3.938 20 C -0.104 4.104 21 N -0.129 5.129 22 C -0.099 4.099 23 C -0.138 4.138 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.141 0.859 30 H 0.169 0.831 31 H 0.090 0.910 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.908 -6.768 -3.144 11.620 hybrid contribution -0.372 0.537 0.914 1.123 sum -9.280 -6.230 -2.230 11.398 Atomic orbital electron populations 1.23396 0.95288 1.06259 1.04706 1.87300 1.05946 1.11378 1.98010 1.22305 0.96616 0.94234 1.05436 1.19204 0.92330 1.01721 0.94160 1.20959 0.94540 1.01133 0.96913 1.21726 0.93297 0.92479 0.98953 1.19786 0.93212 1.02280 0.94023 1.18528 0.87764 0.79142 0.81759 1.90687 1.64734 1.48213 1.42246 1.43476 1.03605 1.38183 1.32874 1.19090 1.10121 1.31979 0.86597 0.87437 1.25491 0.97126 0.95381 0.95742 1.69632 1.40469 1.33481 1.04994 0.87078 0.81980 0.82513 0.79819 1.19284 1.20412 1.17483 1.19348 0.86424 0.94126 0.93860 1.29997 0.92691 0.93802 0.93886 1.81100 1.09068 1.11456 1.11261 1.21076 0.93611 0.97906 0.97325 1.20733 0.93919 1.02206 0.96983 0.90709 0.88292 0.90605 0.89445 0.89203 0.85894 0.83099 0.90989 0.87302 0.86789 0.85808 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 10.76 101.05 1.09 0.07 16 2 S -0.25 -3.04 22.36 -107.50 -2.40 -5.44 16 3 C -0.04 -0.45 6.06 36.01 0.22 -0.23 16 4 C -0.07 -1.06 5.15 -104.52 -0.54 -1.60 16 5 C -0.12 -1.86 9.68 -39.64 -0.38 -2.24 16 6 C -0.05 -0.86 8.10 -39.16 -0.32 -1.18 16 7 C -0.09 -1.77 5.29 -104.97 -0.55 -2.33 16 8 C 0.54 11.83 7.23 -12.38 -0.09 11.74 16 9 O -0.58 -13.58 16.61 5.28 0.09 -13.49 16 10 N -0.46 -10.02 1.99 -119.06 -0.24 -10.25 16 11 C -0.35 -8.10 6.61 -15.00 -0.10 -8.20 16 12 H 0.11 2.73 7.46 -52.49 -0.39 2.34 16 13 C 0.07 1.66 5.17 -17.45 -0.09 1.57 16 14 N -0.85 -21.02 13.95 55.50 0.77 -20.25 16 15 Si 0.86 17.24 24.87 -169.99 -4.23 13.02 16 16 H -0.27 -5.09 6.91 56.52 0.39 -4.70 16 17 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 18 H -0.25 -4.95 7.01 56.52 0.40 -4.55 16 19 C 0.19 3.69 4.28 -6.83 -0.03 3.66 16 20 C 0.22 4.46 15.72 -20.70 -0.33 4.13 16 21 N -0.45 -9.87 18.55 42.23 0.78 -9.09 16 22 C -0.08 -1.41 9.66 -39.16 -0.38 -1.79 16 23 C -0.12 -1.79 9.68 -39.64 -0.38 -2.17 16 24 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 25 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 28 H 0.09 0.94 8.08 -51.92 -0.42 0.52 16 29 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.15 3.01 6.26 -52.49 -0.33 2.68 16 31 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 32 H 0.11 2.04 4.27 -51.93 -0.22 1.81 16 33 H 0.11 2.02 7.56 -51.93 -0.39 1.63 16 34 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 321.35 15.07 4.84 4.84 Total: -1.00 -27.46 321.35 -6.13 -33.59 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -3.86 Total: 5.64 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.88 Total: 1.44 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 1.32 Total: -39.59 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -4.23 Total: 13.02 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.40 Total: -5.44 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.46 -6.13 -33.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126617485.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.521 kcal (2) G-P(sol) polarization free energy of solvation -27.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds