Wall clock time and date at job start Tue Mar 31 2020 05:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81400 * 102.99959 * 2 1 4 4 C 1.50706 * 109.46923 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.84849 * 269.72282 * 4 3 2 6 6 C 1.37938 * 120.15221 * 179.72351 * 5 4 3 7 7 C 1.39649 * 119.84188 * 0.57651 * 6 5 4 8 8 C 1.47726 * 120.14855 * 179.68233 * 7 6 5 9 9 O 1.21593 * 120.00340 * 137.94673 * 8 7 6 10 10 N 1.34779 * 120.00050 * 317.93804 * 8 7 6 11 11 C 1.36875 * 119.99631 * 2.09548 * 10 8 7 12 12 H 1.07995 * 120.00260 * 310.80944 * 11 10 8 13 13 C 1.39048 * 119.99611 * 130.81629 * 11 10 8 14 14 N 1.31364 * 119.99875 * 170.04380 * 13 11 10 15 15 Si 1.86801 * 120.00290 * 350.03884 * 13 11 10 16 16 H 1.48505 * 109.46939 * 95.21842 * 15 13 11 17 17 H 1.48494 * 109.47266 * 215.21967 * 15 13 11 18 18 H 1.48501 * 109.47028 * 335.21898 * 15 13 11 19 19 C 1.46492 * 120.00299 * 182.09467 * 10 8 7 20 20 C 1.47201 * 109.47113 * 84.60252 * 19 10 8 21 21 N 9.09519 * 163.14602 * 21.39625 * 3 1 2 22 22 C 1.39648 * 119.70146 * 359.70237 * 7 6 5 23 23 C 1.37939 * 119.84687 * 359.97438 * 22 7 6 24 24 H 1.09003 * 109.47076 * 60.00086 * 1 2 3 25 25 H 1.08996 * 109.46982 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47345 * 300.00144 * 1 2 3 27 27 H 1.08998 * 109.47239 * 299.99664 * 3 2 1 28 28 H 1.09002 * 109.47242 * 60.00128 * 3 2 1 29 29 H 1.08002 * 119.92474 * 0.02562 * 5 4 3 30 30 H 1.07994 * 120.08150 * 180.25500 * 6 5 4 31 31 H 0.97003 * 119.99784 * 179.97438 * 14 13 11 32 32 H 1.08992 * 109.47563 * 204.60524 * 19 10 8 33 33 H 1.09004 * 109.47338 * 324.60618 * 19 10 8 34 34 H 1.07996 * 120.07878 * 179.97438 * 22 7 6 35 35 H 1.07996 * 119.92609 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 0.0006 5 6 4.4026 2.0208 1.2011 6 6 5.7738 2.1706 1.2090 7 6 6.4712 2.2500 0.0017 8 6 7.9389 2.4174 0.0023 9 8 8.6233 1.7855 -0.7792 10 7 8.5195 3.2707 0.8691 11 6 7.7534 3.9501 1.7775 12 1 6.8671 4.4742 1.4518 13 6 8.1165 3.9654 3.1196 14 7 7.5021 4.7697 3.9571 15 14 9.4778 2.8423 3.7319 16 1 10.7636 3.5852 3.7463 17 1 9.1577 2.3803 5.1064 18 1 9.5944 1.6685 2.8298 19 6 9.9703 3.4712 0.8390 20 6 10.3048 4.4835 -0.1760 21 7 10.5626 5.2648 -0.9620 22 6 5.7747 2.1708 -1.2061 23 6 4.4043 2.0144 -1.1993 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8031 2.2371 -0.8900 28 1 1.8031 2.2371 0.8900 29 1 3.8615 1.9637 2.1341 30 1 6.3063 2.2315 2.1466 31 1 7.7552 4.7801 4.8935 32 1 10.3106 3.8111 1.8170 33 1 10.4620 2.5308 0.5899 34 1 6.3079 2.2319 -2.1433 35 1 3.8644 1.9526 -2.1327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126617485.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:37 Heat of formation + Delta-G solvation = 13.828058 kcal Electronic energy + Delta-G solvation = -20040.893442 eV Core-core repulsion = 16937.142455 eV Total energy + Delta-G solvation = -3103.750987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33387 -39.56122 -37.74426 -36.67436 -34.01388 -33.86710 -31.86647 -30.16573 -29.66370 -28.01488 -26.70804 -23.50775 -23.18809 -21.13225 -20.34144 -18.92223 -17.68085 -17.42430 -17.35122 -16.53322 -16.26425 -16.16507 -15.60294 -15.37465 -14.96215 -14.81460 -14.62713 -14.48523 -14.33622 -14.23200 -14.03814 -13.77481 -13.53334 -13.36311 -13.11597 -12.99387 -12.83092 -12.39659 -12.15755 -11.88338 -11.85361 -11.24447 -10.98696 -10.68592 -9.95762 -9.75047 -9.53661 -8.64137 -8.44368 -6.28546 -0.14589 0.57697 0.95182 1.28040 1.37181 1.42860 1.51702 1.68081 1.71210 1.92466 2.23126 2.63950 2.82853 2.97372 3.19345 3.67227 3.87741 3.98445 4.13220 4.15182 4.29460 4.34834 4.40704 4.41667 4.53463 4.61715 4.76828 4.94407 4.99909 5.20352 5.32797 5.44317 5.61040 5.65651 6.02204 6.05454 6.18111 6.41591 6.89206 7.18727 7.54706 8.66585 Molecular weight = 290.08amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.004592 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.733508 B = 6095.895476 C = 6916.816716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.308 6.308 3 C -0.030 4.030 4 C -0.061 4.061 5 C -0.119 4.119 6 C -0.058 4.058 7 C -0.123 4.123 8 C 0.534 3.466 9 O -0.597 6.597 10 N -0.466 5.466 11 C -0.342 4.342 12 H 0.076 0.924 13 C 0.041 3.959 14 N -0.891 5.891 15 Si 0.906 3.094 16 H -0.244 1.244 17 H -0.280 1.280 18 H -0.246 1.246 19 C 0.185 3.815 20 C 0.226 3.774 21 N -0.473 5.473 22 C -0.088 4.088 23 C -0.112 4.112 24 H 0.089 0.911 25 H 0.109 0.891 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.283 0.717 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.124 0.876 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.586 -7.678 -2.034 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.081 6.081 3 C -0.177 4.177 4 C -0.063 4.063 5 C -0.139 4.139 6 C -0.077 4.077 7 C -0.126 4.126 8 C 0.325 3.675 9 O -0.481 6.481 10 N -0.187 5.187 11 C -0.470 4.470 12 H 0.093 0.907 13 C -0.165 4.165 14 N -0.526 5.526 15 Si 0.729 3.271 16 H -0.169 1.169 17 H -0.206 1.206 18 H -0.170 1.170 19 C 0.060 3.940 20 C -0.093 4.093 21 N -0.152 5.152 22 C -0.108 4.108 23 C -0.132 4.132 24 H 0.108 0.892 25 H 0.128 0.872 26 H 0.105 0.895 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.142 0.858 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.264 -7.627 -3.369 13.224 hybrid contribution -0.135 0.774 0.928 1.216 sum -10.399 -6.853 -2.441 12.691 Atomic orbital electron populations 1.23450 0.91133 1.07407 1.06016 1.87495 1.10540 1.11842 1.98204 1.22285 0.94074 0.94124 1.07256 1.19534 0.94296 0.99186 0.93262 1.21153 0.93562 1.00679 0.98485 1.21565 0.94492 0.93869 0.97774 1.19804 0.92324 1.05163 0.95356 1.18951 0.88801 0.78581 0.81121 1.90651 1.65518 1.49011 1.42951 1.43514 1.04456 1.38060 1.32717 1.18713 1.09675 1.31421 0.87161 0.90670 1.25965 0.99009 0.96076 0.95436 1.69710 1.42310 1.35123 1.05461 0.86352 0.80481 0.81178 0.79098 1.16904 1.20623 1.16972 1.19589 0.85277 0.94926 0.94221 1.30184 0.92044 0.93453 0.93578 1.81101 1.09813 1.12249 1.12039 1.21207 0.94870 0.98173 0.96501 1.21058 0.92925 1.00638 0.98563 0.89222 0.87217 0.89466 0.87228 0.87856 0.84331 0.85114 0.90670 0.86052 0.84561 0.85800 0.83079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 10.76 113.37 1.22 -0.18 16 2 S -0.31 -6.62 22.36 -56.49 -1.26 -7.89 16 3 C -0.03 -0.61 6.06 71.24 0.43 -0.18 16 4 C -0.06 -1.69 5.15 -19.80 -0.10 -1.79 16 5 C -0.12 -3.78 9.68 22.23 0.22 -3.56 16 6 C -0.06 -2.24 8.10 22.54 0.18 -2.06 16 7 C -0.12 -4.98 5.29 -20.09 -0.11 -5.09 16 8 C 0.53 23.88 7.23 86.75 0.63 24.50 16 9 O -0.60 -28.36 16.61 -4.01 -0.07 -28.42 16 10 N -0.47 -20.48 1.99 -648.86 -1.29 -21.76 16 11 C -0.34 -16.18 6.61 84.10 0.56 -15.62 16 12 H 0.08 4.01 7.46 -2.91 -0.02 3.98 16 13 C 0.04 1.92 5.17 84.96 0.44 2.36 16 14 N -0.89 -44.64 13.95 21.68 0.30 -44.34 16 15 Si 0.91 34.70 24.87 68.60 1.71 36.41 16 16 H -0.24 -8.48 6.91 99.48 0.69 -7.80 16 17 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.25 -9.20 7.01 99.48 0.70 -8.50 16 19 C 0.19 7.10 4.28 84.58 0.36 7.46 16 20 C 0.23 9.26 15.72 89.42 1.41 10.66 16 21 N -0.47 -20.62 18.55 20.03 0.37 -20.24 16 22 C -0.09 -3.10 9.66 22.54 0.22 -2.89 16 23 C -0.11 -3.19 9.68 22.23 0.22 -2.98 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.11 1.76 8.08 -2.39 -0.02 1.74 16 28 H 0.10 1.83 8.08 -2.39 -0.02 1.81 16 29 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 30 H 0.13 5.45 6.26 -2.91 -0.02 5.44 16 31 H 0.28 13.21 8.31 -92.71 -0.77 12.44 16 32 H 0.12 4.34 4.27 -2.39 -0.01 4.33 16 33 H 0.14 4.63 7.56 -2.38 -0.02 4.62 16 34 H 0.12 4.24 8.06 -2.91 -0.02 4.21 16 35 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -59.91 321.35 6.51 -53.40 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 1.09 Total: 22.20 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.66 Total: 10.65 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -0.61 Total: -86.35 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.07 Total: -28.42 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 1.71 Total: 36.41 kcal Atomic # 16 Polarization: -6.62 SS G_CDS: -1.26 Total: -7.89 kcal Total: -59.91 6.51 -53.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126617485.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.228 kcal (2) G-P(sol) polarization free energy of solvation -59.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds