Wall clock time and date at job start Tue Mar 31 2020 06:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86802 * 120.00116 * 2 1 4 4 H 1.48493 * 109.47310 * 274.97495 * 3 2 1 5 5 H 1.48499 * 109.47093 * 34.97836 * 3 2 1 6 6 H 1.48501 * 109.47126 * 154.97617 * 3 2 1 7 7 C 1.38985 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99855 * 185.88872 * 7 2 1 9 9 N 1.37315 * 119.99798 * 5.60491 * 7 2 1 10 10 C 1.36516 * 126.07385 * 174.31866 * 9 7 2 11 11 C 1.35661 * 107.51304 * 180.02562 * 10 9 7 12 12 N 1.40656 * 126.08092 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00196 * 180.02562 * 12 11 10 14 14 O 1.21609 * 119.99825 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00437 * 179.97438 * 13 12 11 16 16 C 1.40043 * 119.99974 * 185.18625 * 15 13 12 17 17 C 1.38851 * 120.04040 * 212.80002 * 16 15 13 18 18 C 1.38123 * 119.95058 * 179.76979 * 17 16 15 19 19 C 1.38473 * 120.04375 * 0.51442 * 18 17 16 20 20 F 1.35101 * 119.95140 * 179.71931 * 19 18 17 21 21 C 1.38467 * 120.09021 * 359.74591 * 19 18 17 22 22 C 1.38119 * 120.04572 * 359.97438 * 21 19 18 23 23 C 1.40641 * 107.83791 * 0.02562 * 11 10 9 24 24 N 1.30915 * 108.39517 * 359.71804 * 23 11 10 25 25 H 0.97001 * 119.99704 * 0.02562 * 1 2 3 26 26 H 1.08006 * 126.24589 * 359.97438 * 10 9 7 27 27 H 0.97000 * 119.99676 * 359.97438 * 12 11 10 28 28 H 0.97003 * 119.99207 * 5.18634 * 15 13 12 29 29 H 1.07994 * 120.02610 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.97655 * 180.23974 * 18 17 16 31 31 H 1.08000 * 119.97888 * 179.97438 * 21 19 18 32 32 H 1.07999 * 120.02059 * 179.97438 * 22 21 19 33 33 H 1.08001 * 125.80019 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3894 2.1071 -1.3947 5 1 1.5010 2.6200 0.8026 6 1 3.5932 1.4121 0.5922 7 6 2.0079 -1.2036 0.0005 8 1 3.0836 -1.2060 0.0965 9 7 1.3262 -2.3900 -0.1151 10 6 1.8849 -3.6295 -0.2376 11 6 0.8716 -4.5273 -0.3250 12 7 1.0087 -5.9204 -0.4628 13 6 -0.0872 -6.7011 -0.5390 14 8 -1.1946 -6.2012 -0.4883 15 7 0.0441 -8.0359 -0.6715 16 6 -1.0899 -8.8358 -0.8598 17 6 -1.1246 -10.1248 -0.3448 18 6 -2.2458 -10.9104 -0.5274 19 6 -3.3306 -10.4171 -1.2328 20 9 -4.4241 -11.1892 -1.4153 21 6 -3.2957 -9.1339 -1.7519 22 6 -2.1786 -8.3430 -1.5665 23 6 -0.3403 -3.8172 -0.2546 24 7 -0.0661 -2.5439 -0.1237 25 1 -0.4850 0.8401 -0.0004 26 1 2.9411 -3.8544 -0.2615 27 1 1.8921 -6.3190 -0.5036 28 1 0.9242 -8.4424 -0.6365 29 1 -0.2772 -10.5113 0.2018 30 1 -2.2748 -11.9116 -0.1237 31 1 -4.1425 -8.7511 -2.3021 32 1 -2.1517 -7.3423 -1.9718 33 1 -1.3291 -4.2495 -0.2967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000147695088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:42 Heat of formation + Delta-G solvation = 47.071633 kcal Electronic energy + Delta-G solvation = -21362.603349 eV Core-core repulsion = 17726.373486 eV Total energy + Delta-G solvation = -3636.229862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 5.72 seconds Orbital eigenvalues (eV) -48.89073 -40.60524 -39.46611 -38.25004 -34.62803 -34.28164 -33.15906 -31.21316 -30.27067 -29.20081 -27.47223 -24.89017 -23.39395 -22.74205 -21.16658 -20.61066 -19.59930 -18.47991 -17.77428 -17.36979 -17.06583 -16.13365 -15.60010 -15.48578 -15.07803 -15.03467 -14.35941 -14.23070 -13.78514 -13.58311 -13.40006 -13.16154 -13.00033 -12.74759 -12.53034 -11.70380 -11.46976 -11.30036 -11.22161 -10.94856 -10.53724 -10.44213 -10.08777 -9.59300 -9.20254 -9.15752 -8.82869 -8.10558 -8.02188 -6.72726 -6.57031 -4.24016 1.04907 1.16141 2.72212 2.91706 3.04969 3.09886 3.15194 3.55315 3.77208 3.81412 4.23715 4.31934 4.42622 4.65440 4.75608 4.90428 5.00191 5.12749 5.26986 5.47297 5.78890 6.01071 6.09115 6.21133 6.23630 6.33775 6.44479 6.72135 6.91053 6.94662 7.06295 7.22079 7.30524 7.85575 8.24179 8.28676 8.64719 8.89765 9.36590 9.65634 10.39231 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.049761 B = 0.002798 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.553570 B =10004.032692 C =10478.827382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.047 3.953 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.143 5.143 10 C -0.083 4.083 11 C -0.046 4.046 12 N -0.633 5.633 13 C 0.694 3.306 14 O -0.562 6.562 15 N -0.691 5.691 16 C 0.172 3.828 17 C -0.128 4.128 18 C -0.133 4.133 19 C 0.069 3.931 20 F -0.145 7.145 21 C -0.130 4.130 22 C -0.093 4.093 23 C -0.033 4.033 24 N -0.260 5.260 25 H 0.275 0.725 26 H 0.146 0.854 27 H 0.395 0.605 28 H 0.405 0.595 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -17.198 -2.155 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.089 4.911 10 C -0.234 4.234 11 C -0.152 4.152 12 N -0.278 5.278 13 C 0.395 3.605 14 O -0.438 6.438 15 N -0.339 5.339 16 C 0.076 3.924 17 C -0.149 4.149 18 C -0.153 4.153 19 C 0.049 3.951 20 F -0.124 7.124 21 C -0.150 4.150 22 C -0.114 4.114 23 C -0.208 4.208 24 N -0.091 5.091 25 H 0.085 0.915 26 H 0.163 0.837 27 H 0.228 0.772 28 H 0.240 0.760 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.086 -15.315 -1.980 15.443 hybrid contribution 1.568 -0.736 -0.041 1.732 sum 1.653 -16.051 -2.021 16.262 Atomic orbital electron populations 1.70221 1.06145 1.27982 1.35230 1.25640 0.95687 1.00263 0.95483 0.85816 0.79434 0.80071 0.78846 1.19648 1.20109 1.18808 1.19866 0.92100 0.80655 1.53004 0.86622 1.44540 1.03990 1.03623 1.38948 1.21190 0.96731 0.85733 1.19746 1.17017 0.94420 0.80296 1.23498 1.41509 1.06609 1.05171 1.74480 1.15759 0.85193 0.80234 0.79346 1.90849 1.24287 1.72131 1.56543 1.42646 1.08545 1.05754 1.76914 1.17516 0.88246 0.90425 0.96230 1.20672 0.99057 0.93682 1.01480 1.20837 0.92586 1.01013 1.00818 1.17661 0.84617 0.90211 1.02646 1.91474 1.52288 1.74713 1.93914 1.21063 0.99797 0.92435 1.01668 1.21187 0.92114 1.01090 0.97014 1.24104 0.98006 0.90846 1.07871 1.78266 0.90289 1.15050 1.25504 0.91464 0.83698 0.77191 0.76008 0.84855 0.84666 0.84525 0.83224 0.80650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.38 11.84 55.49 0.66 -20.72 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 18.76 29.56 -169.99 -5.02 13.74 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.32 -8.48 10.24 -14.82 -0.15 -8.63 16 8 H 0.12 2.70 7.84 -52.49 -0.41 2.29 16 9 N -0.14 -3.88 3.74 -11.41 -0.04 -3.92 16 10 C -0.08 -1.90 11.49 -16.39 -0.19 -2.09 16 11 C -0.05 -1.04 6.90 -83.82 -0.58 -1.62 16 12 N -0.63 -10.58 5.47 -14.35 -0.08 -10.65 16 13 C 0.69 11.60 8.28 -86.92 -0.72 10.88 16 14 O -0.56 -11.61 11.16 5.27 0.06 -11.55 16 15 N -0.69 -8.20 5.35 -14.21 -0.08 -8.27 16 16 C 0.17 2.11 6.29 -83.66 -0.53 1.58 16 17 C -0.13 -1.24 9.96 -39.40 -0.39 -1.64 16 18 C -0.13 -1.31 10.02 -39.54 -0.40 -1.71 16 19 C 0.07 0.80 7.30 -39.41 -0.29 0.51 16 20 F -0.15 -1.74 17.27 2.25 0.04 -1.70 16 21 C -0.13 -1.57 10.02 -39.54 -0.40 -1.97 16 22 C -0.09 -1.27 8.65 -39.40 -0.34 -1.61 16 23 C -0.03 -0.84 10.85 -17.04 -0.18 -1.03 16 24 N -0.26 -7.49 10.42 30.80 0.32 -7.17 16 25 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.15 2.74 8.06 -52.48 -0.42 2.31 16 27 H 0.40 4.85 8.84 -40.82 -0.36 4.49 16 28 H 0.40 3.18 8.83 -40.82 -0.36 2.82 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.15 2.32 6.39 -52.49 -0.34 1.98 16 33 H 0.18 4.52 5.92 -52.49 -0.31 4.21 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -33.36 299.97 -6.49 -39.85 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -2.60 Total: 12.11 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -4.26 Total: -6.22 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.78 Total: -50.74 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.06 Total: -11.55 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.36 -6.49 -39.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147695088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.917 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.72 seconds