Wall clock time and date at job start Tue Mar 31 2020 06:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86802 * 120.00116 * 2 1 4 4 H 1.48493 * 109.47310 * 274.97495 * 3 2 1 5 5 H 1.48499 * 109.47093 * 34.97836 * 3 2 1 6 6 H 1.48501 * 109.47126 * 154.97617 * 3 2 1 7 7 C 1.38985 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99855 * 185.88872 * 7 2 1 9 9 N 1.37315 * 119.99798 * 5.60491 * 7 2 1 10 10 C 1.36516 * 126.07385 * 174.31866 * 9 7 2 11 11 C 1.35661 * 107.51304 * 180.02562 * 10 9 7 12 12 N 1.40656 * 126.08092 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00196 * 180.02562 * 12 11 10 14 14 O 1.21609 * 119.99825 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00437 * 179.97438 * 13 12 11 16 16 C 1.40043 * 119.99974 * 185.18625 * 15 13 12 17 17 C 1.38851 * 120.04040 * 212.80002 * 16 15 13 18 18 C 1.38123 * 119.95058 * 179.76979 * 17 16 15 19 19 C 1.38473 * 120.04375 * 0.51442 * 18 17 16 20 20 F 1.35101 * 119.95140 * 179.71931 * 19 18 17 21 21 C 1.38467 * 120.09021 * 359.74591 * 19 18 17 22 22 C 1.38119 * 120.04572 * 359.97438 * 21 19 18 23 23 C 1.40641 * 107.83791 * 0.02562 * 11 10 9 24 24 N 1.30915 * 108.39517 * 359.71804 * 23 11 10 25 25 H 0.97001 * 119.99704 * 0.02562 * 1 2 3 26 26 H 1.08006 * 126.24589 * 359.97438 * 10 9 7 27 27 H 0.97000 * 119.99676 * 359.97438 * 12 11 10 28 28 H 0.97003 * 119.99207 * 5.18634 * 15 13 12 29 29 H 1.07994 * 120.02610 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.97655 * 180.23974 * 18 17 16 31 31 H 1.08000 * 119.97888 * 179.97438 * 21 19 18 32 32 H 1.07999 * 120.02059 * 179.97438 * 22 21 19 33 33 H 1.08001 * 125.80019 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3894 2.1071 -1.3947 5 1 1.5010 2.6200 0.8026 6 1 3.5932 1.4121 0.5922 7 6 2.0079 -1.2036 0.0005 8 1 3.0836 -1.2060 0.0965 9 7 1.3262 -2.3900 -0.1151 10 6 1.8849 -3.6295 -0.2376 11 6 0.8716 -4.5273 -0.3250 12 7 1.0087 -5.9204 -0.4628 13 6 -0.0872 -6.7011 -0.5390 14 8 -1.1946 -6.2012 -0.4883 15 7 0.0441 -8.0359 -0.6715 16 6 -1.0899 -8.8358 -0.8598 17 6 -1.1246 -10.1248 -0.3448 18 6 -2.2458 -10.9104 -0.5274 19 6 -3.3306 -10.4171 -1.2328 20 9 -4.4241 -11.1892 -1.4153 21 6 -3.2957 -9.1339 -1.7519 22 6 -2.1786 -8.3430 -1.5665 23 6 -0.3403 -3.8172 -0.2546 24 7 -0.0661 -2.5439 -0.1237 25 1 -0.4850 0.8401 -0.0004 26 1 2.9411 -3.8544 -0.2615 27 1 1.8921 -6.3190 -0.5036 28 1 0.9242 -8.4424 -0.6365 29 1 -0.2772 -10.5113 0.2018 30 1 -2.2748 -11.9116 -0.1237 31 1 -4.1425 -8.7511 -2.3021 32 1 -2.1517 -7.3423 -1.9718 33 1 -1.3291 -4.2495 -0.2967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147695088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:40 Heat of formation + Delta-G solvation = 24.137486 kcal Electronic energy + Delta-G solvation = -21363.597848 eV Core-core repulsion = 17726.373486 eV Total energy + Delta-G solvation = -3637.224362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -49.81709 -41.97923 -41.09377 -39.42773 -36.02492 -35.68228 -34.91321 -32.21089 -32.09251 -30.43399 -29.07242 -26.74645 -24.39358 -23.81617 -22.81508 -22.04626 -21.31602 -19.93597 -18.80227 -18.76251 -18.32835 -17.39909 -17.15136 -16.62328 -16.52131 -16.31759 -15.79494 -15.37808 -15.23964 -15.10410 -14.80028 -14.48275 -14.14924 -13.80394 -13.53012 -13.46062 -13.27014 -12.94957 -12.78511 -12.12229 -12.05863 -11.90883 -11.32228 -11.02527 -11.01079 -10.77577 -10.07134 -10.06189 -9.07207 -8.46824 -8.44491 -6.21496 0.11030 0.28126 1.29098 1.40106 1.52010 1.59939 1.68599 1.98279 2.15920 2.53258 2.76161 2.82116 3.10650 3.35087 3.36633 3.81924 3.94060 4.28585 4.34676 4.46310 4.53104 4.65609 4.95301 5.01485 5.04825 5.16589 5.23613 5.27574 5.32069 5.40272 5.52810 5.96353 5.98377 6.06630 6.36648 6.76638 7.07381 7.48863 7.55388 7.72136 8.54593 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.049761 B = 0.002798 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.553570 B =10004.032692 C =10478.827382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.007 4.007 3 Si 1.018 2.982 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.242 1.242 7 C -0.354 4.354 8 H 0.142 0.858 9 N -0.170 5.170 10 C -0.077 4.077 11 C -0.027 4.027 12 N -0.623 5.623 13 C 0.694 3.306 14 O -0.605 6.605 15 N -0.666 5.666 16 C 0.153 3.847 17 C -0.109 4.109 18 C -0.124 4.124 19 C 0.060 3.940 20 F -0.149 7.149 21 C -0.140 4.140 22 C -0.116 4.116 23 C -0.059 4.059 24 N -0.312 5.312 25 H 0.275 0.725 26 H 0.190 0.810 27 H 0.420 0.580 28 H 0.428 0.572 29 H 0.173 0.827 30 H 0.168 0.832 31 H 0.140 0.860 32 H 0.120 0.880 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 -19.367 -1.635 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.165 1.165 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.060 4.940 10 C -0.228 4.228 11 C -0.133 4.133 12 N -0.271 5.271 13 C 0.394 3.606 14 O -0.483 6.483 15 N -0.315 5.315 16 C 0.058 3.942 17 C -0.129 4.129 18 C -0.143 4.143 19 C 0.040 3.960 20 F -0.127 7.127 21 C -0.159 4.159 22 C -0.137 4.137 23 C -0.235 4.235 24 N -0.143 5.143 25 H 0.085 0.915 26 H 0.207 0.793 27 H 0.258 0.742 28 H 0.268 0.732 29 H 0.191 0.809 30 H 0.185 0.815 31 H 0.158 0.842 32 H 0.138 0.862 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.889 -17.586 -1.469 17.883 hybrid contribution 0.649 -0.320 -0.226 0.759 sum 3.538 -17.907 -1.695 18.331 Atomic orbital electron populations 1.70406 1.08450 1.28999 1.37530 1.26869 0.96433 1.04336 0.94216 0.84586 0.78554 0.74263 0.78853 1.19259 1.20325 1.16480 1.20601 0.93372 0.80982 1.53504 0.84117 1.44829 1.03538 1.05180 1.40430 1.21950 0.98787 0.84415 1.17615 1.17016 0.92785 0.82758 1.20782 1.41244 1.08151 1.03003 1.74659 1.15955 0.84342 0.81624 0.78658 1.90842 1.26059 1.73425 1.58003 1.42253 1.09877 1.03755 1.75659 1.17728 0.87913 0.91548 0.97035 1.21017 1.00012 0.91911 0.99967 1.21230 0.91510 1.02253 0.99330 1.17854 0.85191 0.89933 1.03035 1.91467 1.52640 1.74634 1.93995 1.21105 0.99656 0.92999 1.02155 1.21040 0.93704 1.00290 0.98669 1.24148 0.99075 0.91039 1.09214 1.78159 0.92300 1.16630 1.27260 0.91499 0.79262 0.74215 0.73249 0.80945 0.81463 0.84186 0.86166 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.78 11.84 21.66 0.26 -47.53 16 2 C -0.01 -0.37 5.50 84.95 0.47 0.10 16 3 Si 1.02 38.42 29.56 68.60 2.03 40.45 16 4 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.28 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.24 -8.16 7.11 99.48 0.71 -7.45 16 7 C -0.35 -18.52 10.24 84.01 0.86 -17.66 16 8 H 0.14 6.34 7.84 -2.91 -0.02 6.32 16 9 N -0.17 -9.35 3.74 -190.01 -0.71 -10.06 16 10 C -0.08 -3.45 11.49 83.37 0.96 -2.49 16 11 C -0.03 -1.18 6.90 37.71 0.26 -0.92 16 12 N -0.62 -19.76 5.47 -317.58 -1.74 -21.49 16 13 C 0.69 22.64 8.28 179.06 1.48 24.12 16 14 O -0.60 -25.75 11.16 -4.06 -0.05 -25.80 16 15 N -0.67 -14.32 5.35 -317.11 -1.70 -16.01 16 16 C 0.15 3.49 6.29 38.12 0.24 3.72 16 17 C -0.11 -1.70 9.96 22.39 0.22 -1.47 16 18 C -0.12 -2.02 10.02 22.30 0.22 -1.79 16 19 C 0.06 1.30 7.30 22.38 0.16 1.46 16 20 F -0.15 -3.37 17.27 44.97 0.78 -2.59 16 21 C -0.14 -3.40 10.02 22.30 0.22 -3.18 16 22 C -0.12 -3.21 8.65 22.39 0.19 -3.01 16 23 C -0.06 -3.20 10.85 85.42 0.93 -2.27 16 24 N -0.31 -18.73 10.42 -56.47 -0.59 -19.32 16 25 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 26 H 0.19 6.49 8.06 -2.91 -0.02 6.46 16 27 H 0.42 8.93 8.84 -92.71 -0.82 8.11 16 28 H 0.43 5.11 8.83 -92.71 -0.82 4.29 16 29 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 30 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 32 H 0.12 4.02 6.39 -2.91 -0.02 4.00 16 33 H 0.17 9.12 5.92 -2.91 -0.02 9.10 16 Total: -1.00 -77.83 299.97 4.06 -73.77 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: -0.44 Total: 31.97 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 6.22 Total: -3.39 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -4.48 Total: -114.41 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.05 Total: -25.80 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -77.83 4.06 -73.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147695088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.903 kcal (2) G-P(sol) polarization free energy of solvation -77.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds