Wall clock time and date at job start Tue Mar 31 2020 08:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36907 * 120.00239 * 2 1 4 4 H 1.07994 * 120.00078 * 173.43201 * 3 2 1 5 5 C 1.39025 * 119.99824 * 353.42997 * 3 2 1 6 6 N 1.31385 * 120.00092 * 5.12397 * 5 3 2 7 7 Si 1.86797 * 119.99916 * 185.12949 * 5 3 2 8 8 H 1.48499 * 109.47309 * 59.99840 * 7 5 3 9 9 H 1.48500 * 109.47113 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47096 * 299.99784 * 7 5 3 11 11 C 1.34776 * 119.99713 * 179.97438 * 2 1 3 12 12 O 1.21597 * 120.00220 * 5.72856 * 11 2 1 13 13 C 1.47652 * 119.99724 * 185.72772 * 11 2 1 14 14 C 1.40647 * 126.05203 * 174.14509 * 13 11 2 15 15 N 1.31245 * 106.62036 * 179.78391 * 14 13 11 16 16 N 1.40107 * 107.19504 * 0.36230 * 15 14 13 17 17 C 1.40142 * 125.55859 * 179.88389 * 16 15 14 18 18 C 1.38865 * 120.04720 * 359.69660 * 17 16 15 19 19 C 1.38079 * 119.95651 * 180.02562 * 18 17 16 20 20 C 1.38504 * 120.04640 * 0.02562 * 19 18 17 21 21 F 1.35095 * 119.96055 * 179.97438 * 20 19 18 22 22 C 1.38506 * 120.08603 * 0.26740 * 20 19 18 23 23 C 1.38088 * 120.04069 * 359.45479 * 22 20 19 24 24 N 1.28714 * 108.87484 * 359.62400 * 16 15 14 25 25 H 1.09001 * 109.47504 * 184.61821 * 1 2 3 26 26 H 1.08998 * 109.47212 * 304.61715 * 1 2 3 27 27 H 1.09002 * 109.46850 * 64.61910 * 1 2 3 28 28 H 0.96995 * 119.99851 * 179.97438 * 6 5 3 29 29 H 1.07998 * 126.68953 * 0.02562 * 14 13 11 30 30 H 1.08003 * 120.02098 * 359.97438 * 18 17 16 31 31 H 1.08005 * 119.97903 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.97782 * 179.70881 * 22 20 19 33 33 H 1.08003 * 120.02346 * 180.29820 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.2242 1.1887 0.1070 5 6 1.4613 2.3857 -0.1378 6 7 0.1478 2.3901 -0.1667 7 14 2.4041 3.9918 -0.2818 8 1 3.2842 3.9438 -1.4769 9 1 1.4456 5.1178 -0.4185 10 1 3.2319 4.1907 0.9349 11 6 2.1388 -1.1672 0.0005 12 8 1.5354 -2.2177 -0.1041 13 6 3.6098 -1.1704 0.1281 14 6 4.4269 -2.3076 0.2592 15 7 5.6633 -1.8745 0.3386 16 7 5.6177 -0.4761 0.2661 17 6 6.7267 0.3792 0.3167 18 6 8.0044 -0.1465 0.4556 19 6 9.0958 0.6979 0.5058 20 6 8.9167 2.0685 0.4183 21 9 9.9856 2.8932 0.4681 22 6 7.6425 2.5952 0.2858 23 6 6.5491 1.7538 0.2295 24 7 4.3915 -0.1054 0.1400 25 1 -0.3634 -1.0243 0.0827 26 1 -0.3633 0.5838 0.8457 27 1 -0.3633 0.4405 -0.9285 28 1 -0.3323 3.2274 -0.2625 29 1 4.1008 -3.3369 0.2850 30 1 8.1444 -1.2152 0.5252 31 1 10.0897 0.2894 0.6143 32 1 7.5045 3.6645 0.2224 33 1 5.5561 2.1645 0.1213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157783917.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:37 Heat of formation + Delta-G solvation = 74.217645 kcal Electronic energy + Delta-G solvation = -22330.489718 eV Core-core repulsion = 18695.436995 eV Total energy + Delta-G solvation = -3635.052723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -49.96878 -43.63001 -40.38075 -39.88157 -36.88269 -34.67404 -33.75155 -33.19434 -32.25363 -30.40491 -28.40051 -26.90205 -25.19992 -24.69515 -23.06167 -22.50460 -21.14894 -20.08190 -18.95215 -18.55034 -17.63539 -17.39913 -17.23911 -16.62896 -16.26185 -16.17454 -15.91738 -15.83501 -15.37236 -14.79186 -14.71793 -14.25024 -14.13391 -13.87758 -13.54676 -13.47641 -13.36487 -12.83627 -12.72018 -12.57438 -12.19287 -12.10656 -11.71289 -11.22874 -11.07835 -11.02267 -10.71608 -10.33274 -10.03180 -9.25213 -8.30982 -5.88328 -0.63206 0.03706 0.61308 0.87819 0.93095 1.41338 1.47026 1.52741 2.23109 2.34702 2.45910 2.66203 2.94553 3.10625 3.16530 3.63564 3.68045 3.91444 4.00527 4.14056 4.21782 4.45768 4.60120 4.79810 4.81432 4.92564 4.93503 4.98488 5.13791 5.21230 5.36525 5.36982 5.60855 5.68979 5.90353 6.49983 6.78787 7.05138 7.47674 7.83552 8.62327 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.005958 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.689713 B = 4698.214254 C = 6494.692670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.427 5.427 3 C -0.354 4.354 4 H 0.152 0.848 5 C -0.010 4.010 6 N -0.891 5.891 7 Si 0.985 3.015 8 H -0.262 1.262 9 H -0.278 1.278 10 H -0.256 1.256 11 C 0.494 3.506 12 O -0.632 6.632 13 C -0.032 4.032 14 C 0.076 3.924 15 N -0.286 5.286 16 N -0.185 5.185 17 C 0.129 3.871 18 C -0.081 4.081 19 C -0.117 4.117 20 C 0.096 3.904 21 F -0.134 7.134 22 C -0.125 4.125 23 C -0.100 4.100 24 N -0.212 5.212 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.273 0.727 29 H 0.240 0.760 30 H 0.160 0.840 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.554 1.291 1.445 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.141 5.141 3 C -0.484 4.484 4 H 0.169 0.831 5 C -0.213 4.213 6 N -0.530 5.530 7 Si 0.807 3.193 8 H -0.186 1.186 9 H -0.203 1.203 10 H -0.181 1.181 11 C 0.283 3.717 12 O -0.521 6.521 13 C -0.198 4.198 14 C -0.115 4.115 15 N -0.113 5.113 16 N -0.076 5.076 17 C 0.037 3.963 18 C -0.102 4.102 19 C -0.136 4.136 20 C 0.076 3.924 21 F -0.113 7.113 22 C -0.145 4.145 23 C -0.122 4.122 24 N -0.054 5.054 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.256 0.744 30 H 0.177 0.823 31 H 0.198 0.802 32 H 0.184 0.816 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.192 1.707 1.438 17.336 hybrid contribution -1.094 0.409 -0.144 1.177 sum 16.098 2.116 1.294 16.288 Atomic orbital electron populations 1.21509 0.78922 0.97796 1.02781 1.43986 1.07005 1.05618 1.57536 1.21555 0.96095 0.82690 1.48053 0.83141 1.26368 0.96592 1.03014 0.95302 1.70321 1.07368 1.28670 1.46634 0.85099 0.78263 0.76035 0.79937 1.18614 1.20268 1.18052 1.16762 0.84346 0.83857 0.86750 1.90591 1.68479 1.31722 1.61354 1.23019 0.95939 0.89567 1.11225 1.25405 0.87788 1.01800 0.96485 1.77750 1.21412 0.89771 1.22387 1.48726 1.03367 1.03498 1.51965 1.17818 0.84001 0.88423 1.06019 1.20882 0.88168 1.02257 0.98847 1.21266 1.00993 0.90476 1.00850 1.17821 0.83375 0.88506 1.02713 1.91524 1.54128 1.71883 1.93721 1.21176 0.89727 1.02125 1.01427 1.20877 1.00912 0.90384 0.99996 1.74085 0.91033 1.26059 1.14252 0.93989 0.91737 0.92488 0.91681 0.74421 0.82253 0.80229 0.81567 0.84728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.75 8.85 127.77 1.13 7.88 16 2 N -0.43 -22.65 3.02 -662.40 -2.00 -24.65 16 3 C -0.35 -18.34 9.34 84.09 0.79 -17.55 16 4 H 0.15 7.47 4.09 -30.08 -0.12 7.35 16 5 C -0.01 -0.51 5.46 84.95 0.46 -0.05 16 6 N -0.89 -45.69 9.45 21.68 0.20 -45.48 16 7 Si 0.98 38.52 29.56 68.60 2.03 40.55 16 8 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 9 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 10 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 11 C 0.49 25.24 7.63 86.73 0.66 25.90 16 12 O -0.63 -33.75 16.26 -4.02 -0.07 -33.82 16 13 C -0.03 -1.42 6.84 42.18 0.29 -1.14 16 14 C 0.08 2.72 11.92 85.37 1.02 3.74 16 15 N -0.29 -9.71 11.90 -56.29 -0.67 -10.38 16 16 N -0.18 -6.69 4.44 -51.13 -0.23 -6.92 16 17 C 0.13 3.78 6.74 38.11 0.26 4.04 16 18 C -0.08 -1.76 9.65 22.38 0.22 -1.55 16 19 C -0.12 -1.97 10.02 22.30 0.22 -1.75 16 20 C 0.10 1.84 7.30 22.40 0.16 2.00 16 21 F -0.13 -2.54 17.26 44.97 0.78 -1.77 16 22 C -0.13 -2.66 10.02 22.30 0.22 -2.44 16 23 C -0.10 -2.77 9.61 22.39 0.22 -2.56 16 24 N -0.21 -9.01 7.67 -48.62 -0.37 -9.38 16 25 H 0.04 2.06 6.94 -2.39 -0.02 2.04 16 26 H 0.06 3.33 7.01 -2.39 -0.02 3.32 16 27 H 0.06 2.97 7.09 -2.39 -0.02 2.96 16 28 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 29 H 0.24 6.79 8.06 -2.91 -0.02 6.76 16 30 H 0.16 3.15 7.67 -2.91 -0.02 3.13 16 31 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.13 4.20 7.67 -2.91 -0.02 4.17 16 Total: -1.00 -62.88 297.19 6.38 -56.50 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.06 Total: 18.82 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 5.65 Total: 16.54 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -3.07 Total: -96.81 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.07 Total: -33.82 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.77 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -62.88 6.38 -56.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157783917.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.714 kcal (2) G-P(sol) polarization free energy of solvation -62.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds