Wall clock time and date at job start Tue Mar 31 2020 06:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00049 * 2 1 4 4 H 1.48501 * 109.47645 * 240.00298 * 3 2 1 5 5 H 1.48502 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46972 * 120.00455 * 3 2 1 7 7 C 1.37884 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99867 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47191 * 183.28876 * 9 7 2 11 11 C 1.46897 * 111.00265 * 164.03761 * 10 9 7 12 12 C 1.50704 * 109.46878 * 288.04174 * 11 10 9 13 13 C 1.35340 * 123.76682 * 95.00329 * 12 11 10 14 14 S 1.72113 * 104.15517 * 179.97438 * 13 12 11 15 15 N 1.56513 * 95.88290 * 359.97438 * 14 13 12 16 16 N 1.27574 * 109.22408 * 0.02562 * 15 14 13 17 17 C 1.46904 * 110.99466 * 287.99122 * 10 9 7 18 18 C 1.50699 * 109.46825 * 169.99897 * 17 10 9 19 19 C 1.38673 * 120.41870 * 269.72185 * 18 17 10 20 20 C 1.38634 * 118.42170 * 179.78276 * 19 18 17 21 21 C 1.38230 * 119.15626 * 0.51565 * 20 19 18 22 22 N 1.31854 * 120.76494 * 359.71641 * 21 20 19 23 23 C 1.31885 * 121.72691 * 0.02562 * 22 21 20 24 24 H 0.96996 * 119.99846 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47290 * 63.28543 * 9 7 2 26 26 H 1.09001 * 109.47085 * 303.28394 * 9 7 2 27 27 H 1.08993 * 109.47358 * 168.04013 * 11 10 9 28 28 H 1.08997 * 109.46870 * 48.03841 * 11 10 9 29 29 H 1.08007 * 127.92781 * 359.94925 * 13 12 11 30 30 H 1.09002 * 109.46869 * 289.99898 * 17 10 9 31 31 H 1.09000 * 109.46917 * 50.00327 * 17 10 9 32 32 H 1.08002 * 120.79064 * 0.02562 * 19 18 17 33 33 H 1.07995 * 120.42002 * 180.22078 * 20 19 18 34 34 H 1.07997 * 119.61449 * 179.75413 * 21 20 19 35 35 H 1.07994 * 119.61713 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2037 -3.6147 0.0783 11 6 1.5250 -4.8608 0.4581 12 6 1.1274 -4.7938 1.9102 13 6 -0.0954 -4.4021 2.3380 14 16 0.0025 -4.5147 4.0526 15 7 1.4845 -5.0163 4.0960 16 7 1.9310 -5.1110 2.9047 17 6 2.9312 -3.7761 -1.1878 18 6 4.0604 -4.7555 -0.9969 19 6 5.3162 -4.3126 -0.6097 20 6 6.3237 -5.2499 -0.4418 21 6 6.0478 -6.5843 -0.6748 22 7 4.8427 -6.9689 -1.0467 23 6 3.8592 -6.1057 -1.2112 24 1 -0.4850 0.8400 0.0004 25 1 0.6690 -2.5826 -0.9183 26 1 0.5813 -2.5320 0.8588 27 1 2.1994 -5.7032 0.3045 28 1 0.6346 -4.9915 -0.1568 29 1 -0.9392 -4.0899 1.7404 30 1 2.2507 -4.1505 -1.9525 31 1 3.3346 -2.8129 -1.5003 32 1 5.5038 -3.2628 -0.4392 33 1 7.3128 -4.9411 -0.1376 34 1 6.8282 -7.3203 -0.5501 35 1 2.8853 -6.4582 -1.5171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159067322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:31 Heat of formation + Delta-G solvation = 115.297165 kcal Electronic energy + Delta-G solvation = -20381.420353 eV Core-core repulsion = 17314.362147 eV Total energy + Delta-G solvation = -3067.058205 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -40.56602 -39.92588 -36.92221 -32.92589 -32.76600 -31.80006 -30.94120 -27.82048 -26.74536 -26.28976 -24.14255 -23.25774 -21.99109 -20.99672 -20.32513 -17.91259 -16.83269 -16.58997 -16.04054 -15.66369 -15.39185 -15.10495 -14.83184 -14.27507 -13.91656 -13.74874 -13.27139 -12.89865 -12.74226 -12.53056 -12.16434 -11.88035 -11.63078 -11.35605 -11.21188 -11.04829 -10.78735 -10.61037 -10.09074 -9.78328 -9.52210 -9.50176 -9.38847 -9.31633 -9.18071 -8.71682 -8.52736 -7.47909 -6.13978 -4.14942 0.60569 1.32840 1.46893 1.55907 2.05081 2.61862 3.26294 3.31020 3.33988 4.01739 4.34359 4.42213 4.62699 4.92331 5.05632 5.11647 5.21432 5.26464 5.29436 5.32949 5.37874 5.62829 5.74475 5.84154 5.92066 6.02687 6.05219 6.31836 6.36948 6.65077 6.93156 7.04118 7.11646 7.65072 7.89371 8.00197 8.16445 8.17893 8.36138 8.91034 9.49421 10.96653 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.007161 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.538893 B = 3909.159573 C = 6097.092985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.190 3.810 10 N -0.524 5.524 11 C 0.128 3.872 12 C 0.051 3.949 13 C -0.272 4.272 14 S 0.392 5.608 15 N -0.297 5.297 16 N -0.221 5.221 17 C 0.104 3.896 18 C -0.114 4.114 19 C -0.053 4.053 20 C -0.173 4.173 21 C 0.085 3.915 22 N -0.489 5.489 23 C 0.095 3.905 24 H 0.262 0.738 25 H -0.006 1.006 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.196 0.804 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.149 0.851 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -9.928 0.698 10.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.065 3.935 10 N -0.248 5.248 11 C -0.004 4.004 12 C -0.094 4.094 13 C -0.429 4.429 14 S 0.528 5.472 15 N -0.276 5.276 16 N -0.089 5.089 17 C -0.024 4.024 18 C -0.116 4.116 19 C -0.079 4.079 20 C -0.193 4.193 21 C -0.072 4.072 22 N -0.197 5.197 23 C -0.062 4.062 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.213 0.787 30 H 0.056 0.944 31 H 0.117 0.883 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.166 0.834 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.905 -10.850 2.749 11.564 hybrid contribution -0.260 2.048 -1.925 2.822 sum 2.645 -8.802 0.824 9.228 Atomic orbital electron populations 1.69919 1.06003 1.27012 1.50802 1.24947 0.94872 0.99230 0.95306 0.86587 0.79528 0.82780 0.78714 1.20180 1.21283 1.20214 1.21070 0.93485 0.89747 1.50319 0.91939 1.19868 0.90167 0.87130 0.96339 1.62055 1.29688 1.03188 1.29914 1.20522 0.98129 0.95529 0.86231 1.22132 0.89005 0.99986 0.98285 1.28136 1.04176 1.08832 1.01724 1.81209 1.14857 1.48257 1.02916 1.78895 1.08635 1.21968 1.18099 1.71102 1.28819 1.15968 0.93034 1.20927 0.92373 0.98252 0.90877 1.21039 0.96193 0.95657 0.98720 1.21541 0.92045 1.00572 0.93791 1.22110 1.00413 0.94584 1.02211 1.22611 0.94053 0.94474 0.96077 1.67617 1.00729 1.38954 1.12423 1.22608 0.97669 0.89254 0.96704 0.92793 0.98800 0.94463 0.89569 0.93088 0.78712 0.94419 0.88282 0.84640 0.85218 0.83382 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.15 13.29 55.43 0.74 -24.42 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.41 8.51 -34.44 -0.29 -13.70 16 8 H 0.06 1.64 7.47 -52.49 -0.39 1.25 16 9 C 0.19 4.49 4.57 -4.97 -0.02 4.47 16 10 N -0.52 -10.44 4.39 -238.96 -1.05 -11.49 16 11 C 0.13 2.21 5.30 -4.98 -0.03 2.18 16 12 C 0.05 0.92 5.91 -83.66 -0.49 0.42 16 13 C -0.27 -4.28 9.95 29.70 0.30 -3.99 16 14 S 0.39 5.60 23.40 -107.50 -2.52 3.08 16 15 N -0.30 -5.34 12.54 60.35 0.76 -4.58 16 16 N -0.22 -4.31 11.68 32.45 0.38 -3.93 16 17 C 0.10 1.81 4.99 -4.97 -0.02 1.78 16 18 C -0.11 -1.79 4.94 -104.48 -0.52 -2.31 16 19 C -0.05 -0.79 9.86 -39.27 -0.39 -1.18 16 20 C -0.17 -2.25 10.11 -39.44 -0.40 -2.65 16 21 C 0.09 1.13 11.18 -17.55 -0.20 0.93 16 22 N -0.49 -7.45 10.36 -13.25 -0.14 -7.59 16 23 C 0.09 1.42 9.04 -17.55 -0.16 1.26 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H -0.01 -0.14 8.05 -51.93 -0.42 -0.56 16 26 H 0.04 0.93 6.09 -51.93 -0.32 0.62 16 27 H 0.09 1.42 5.15 -51.93 -0.27 1.15 16 28 H 0.05 0.80 8.03 -51.93 -0.42 0.38 16 29 H 0.20 2.71 8.06 -52.48 -0.42 2.29 16 30 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.10 1.86 7.00 -51.93 -0.36 1.49 16 32 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.15 1.93 7.72 -52.49 -0.41 1.52 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -31.02 314.48 -8.26 -39.28 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -3.82 Total: 0.31 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.32 Total: -11.31 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.69 Total: -52.01 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 5.60 SS G_CDS: -2.52 Total: 3.08 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.02 -8.26 -39.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159067322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.578 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds