Wall clock time and date at job start Tue Mar 31 2020 06:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00049 * 2 1 4 4 H 1.48501 * 109.47645 * 240.00298 * 3 2 1 5 5 H 1.48502 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46972 * 120.00455 * 3 2 1 7 7 C 1.37884 * 120.00061 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00016 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99867 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47191 * 183.28876 * 9 7 2 11 11 C 1.46897 * 111.00265 * 164.03761 * 10 9 7 12 12 C 1.50704 * 109.46878 * 288.04174 * 11 10 9 13 13 C 1.35340 * 123.76682 * 95.00329 * 12 11 10 14 14 S 1.72113 * 104.15517 * 179.97438 * 13 12 11 15 15 N 1.56513 * 95.88290 * 359.97438 * 14 13 12 16 16 N 1.27574 * 109.22408 * 0.02562 * 15 14 13 17 17 C 1.46904 * 110.99466 * 287.99122 * 10 9 7 18 18 C 1.50699 * 109.46825 * 169.99897 * 17 10 9 19 19 C 1.38673 * 120.41870 * 269.72185 * 18 17 10 20 20 C 1.38634 * 118.42170 * 179.78276 * 19 18 17 21 21 C 1.38230 * 119.15626 * 0.51565 * 20 19 18 22 22 N 1.31854 * 120.76494 * 359.71641 * 21 20 19 23 23 C 1.31885 * 121.72691 * 0.02562 * 22 21 20 24 24 H 0.96996 * 119.99846 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47290 * 63.28543 * 9 7 2 26 26 H 1.09001 * 109.47085 * 303.28394 * 9 7 2 27 27 H 1.08993 * 109.47358 * 168.04013 * 11 10 9 28 28 H 1.08997 * 109.46870 * 48.03841 * 11 10 9 29 29 H 1.08007 * 127.92781 * 359.94925 * 13 12 11 30 30 H 1.09002 * 109.46869 * 289.99898 * 17 10 9 31 31 H 1.09000 * 109.46917 * 50.00327 * 17 10 9 32 32 H 1.08002 * 120.79064 * 0.02562 * 19 18 17 33 33 H 1.07995 * 120.42002 * 180.22078 * 20 19 18 34 34 H 1.07997 * 119.61449 * 179.75413 * 21 20 19 35 35 H 1.07994 * 119.61713 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2037 -3.6147 0.0783 11 6 1.5250 -4.8608 0.4581 12 6 1.1274 -4.7938 1.9102 13 6 -0.0954 -4.4021 2.3380 14 16 0.0025 -4.5147 4.0526 15 7 1.4845 -5.0163 4.0960 16 7 1.9310 -5.1110 2.9047 17 6 2.9312 -3.7761 -1.1878 18 6 4.0604 -4.7555 -0.9969 19 6 5.3162 -4.3126 -0.6097 20 6 6.3237 -5.2499 -0.4418 21 6 6.0478 -6.5843 -0.6748 22 7 4.8427 -6.9689 -1.0467 23 6 3.8592 -6.1057 -1.2112 24 1 -0.4850 0.8400 0.0004 25 1 0.6690 -2.5826 -0.9183 26 1 0.5813 -2.5320 0.8588 27 1 2.1994 -5.7032 0.3045 28 1 0.6346 -4.9915 -0.1568 29 1 -0.9392 -4.0899 1.7404 30 1 2.2507 -4.1505 -1.9525 31 1 3.3346 -2.8129 -1.5003 32 1 5.5038 -3.2628 -0.4392 33 1 7.3128 -4.9411 -0.1376 34 1 6.8282 -7.3203 -0.5501 35 1 2.8853 -6.4582 -1.5171 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159067322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:30 Heat of formation + Delta-G solvation = 94.456288 kcal Electronic energy + Delta-G solvation = -20382.324081 eV Core-core repulsion = 17314.362147 eV Total energy + Delta-G solvation = -3067.961933 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = -0.28 seconds Orbital eigenvalues (eV) -41.88799 -41.06823 -38.40737 -34.82885 -34.05757 -32.99653 -32.26645 -29.49834 -28.15586 -27.62981 -25.78640 -24.38835 -23.47343 -22.34535 -21.71561 -19.21567 -18.53811 -17.91411 -17.24353 -17.02069 -16.78835 -16.68035 -16.14839 -15.82708 -15.39418 -15.00738 -14.51772 -14.24723 -14.03541 -13.86814 -13.75169 -13.34725 -13.19835 -12.89014 -12.72189 -12.57875 -12.42239 -12.26878 -11.84453 -11.36375 -11.05827 -10.80726 -10.65585 -10.60214 -10.54532 -10.33347 -9.86166 -9.04937 -8.18922 -6.25858 -0.67073 0.21189 0.26418 0.42277 0.79485 1.25663 1.40759 1.41989 1.49334 2.40149 2.87660 3.11418 3.14460 3.47367 3.60923 3.88574 3.95501 4.02179 4.09511 4.16751 4.20520 4.38702 4.52806 4.59374 4.73000 4.74685 4.81729 4.96557 5.19539 5.22062 5.29737 5.51355 5.66060 5.84765 6.06144 6.29841 6.54657 6.86214 6.87910 7.06800 7.42217 8.90892 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.007161 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.538893 B = 3909.159573 C = 6097.092985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.206 3.794 10 N -0.535 5.535 11 C 0.131 3.869 12 C 0.030 3.970 13 C -0.283 4.283 14 S 0.483 5.517 15 N -0.335 5.335 16 N -0.256 5.256 17 C 0.110 3.890 18 C -0.126 4.126 19 C -0.070 4.070 20 C -0.167 4.167 21 C 0.084 3.916 22 N -0.507 5.507 23 C 0.091 3.909 24 H 0.264 0.736 25 H -0.024 1.024 26 H 0.023 0.977 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.211 0.789 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.161 0.839 34 H 0.182 0.818 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -10.336 1.050 10.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.074 0.926 9 C 0.080 3.920 10 N -0.259 5.259 11 C -0.001 4.001 12 C -0.115 4.115 13 C -0.439 4.439 14 S 0.618 5.382 15 N -0.314 5.314 16 N -0.123 5.123 17 C -0.018 4.018 18 C -0.129 4.129 19 C -0.096 4.096 20 C -0.187 4.187 21 C -0.073 4.073 22 N -0.215 5.215 23 C -0.065 4.065 24 H 0.073 0.927 25 H -0.007 1.007 26 H 0.041 0.959 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.228 0.772 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.150 0.850 33 H 0.178 0.822 34 H 0.199 0.801 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.545 -11.277 3.096 12.220 hybrid contribution -0.482 2.134 -1.967 2.942 sum 3.062 -9.144 1.129 9.709 Atomic orbital electron populations 1.70015 1.07162 1.27731 1.51756 1.25676 0.95655 1.02302 0.95114 0.85666 0.78418 0.79132 0.78790 1.19284 1.20841 1.20263 1.21390 0.93439 0.91248 1.49828 0.92561 1.19505 0.90109 0.87792 0.94601 1.61913 1.29099 1.03553 1.31384 1.20544 0.98776 0.94319 0.86417 1.22275 0.89819 1.01023 0.98412 1.28473 1.04074 1.07966 1.03433 1.80801 1.11636 1.45111 1.00696 1.78573 1.11285 1.23493 1.18032 1.71135 1.30118 1.17527 0.93515 1.20811 0.92938 0.97921 0.90130 1.20875 0.95921 0.95682 1.00403 1.21706 0.92576 1.01044 0.94295 1.22419 1.01194 0.94089 1.00968 1.23216 0.94119 0.95407 0.94565 1.67681 1.01529 1.39166 1.13153 1.22761 0.98410 0.88832 0.96546 0.92746 1.00664 0.95921 0.88806 0.91497 0.77178 0.93352 0.90311 0.85033 0.82156 0.80125 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.17 13.29 21.45 0.28 -51.88 16 2 C 0.01 0.61 5.46 84.66 0.46 1.07 16 3 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.52 -27.86 8.51 25.60 0.22 -27.65 16 8 H 0.06 3.01 7.47 -2.91 -0.02 2.99 16 9 C 0.21 9.92 4.57 85.55 0.39 10.31 16 10 N -0.53 -21.57 4.39 -909.94 -3.99 -25.56 16 11 C 0.13 4.51 5.30 85.56 0.45 4.96 16 12 C 0.03 1.09 5.91 41.90 0.25 1.34 16 13 C -0.28 -8.63 9.95 67.15 0.67 -7.97 16 14 S 0.48 12.99 23.40 -56.49 -1.32 11.67 16 15 N -0.33 -11.81 12.54 37.02 0.46 -11.34 16 16 N -0.26 -9.94 11.68 -51.25 -0.60 -10.54 16 17 C 0.11 3.88 4.99 85.56 0.43 4.31 16 18 C -0.13 -3.96 4.94 -19.77 -0.10 -4.05 16 19 C -0.07 -2.05 9.86 22.47 0.22 -1.83 16 20 C -0.17 -4.01 10.11 22.36 0.23 -3.78 16 21 C 0.08 2.03 11.18 84.69 0.95 2.98 16 22 N -0.51 -14.65 10.36 -195.85 -2.03 -16.68 16 23 C 0.09 2.65 9.04 84.67 0.77 3.42 16 24 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 25 H -0.02 -1.24 8.05 -2.39 -0.02 -1.26 16 26 H 0.02 1.15 6.09 -2.39 -0.01 1.14 16 27 H 0.09 3.06 5.15 -2.39 -0.01 3.05 16 28 H 0.07 2.06 8.03 -2.39 -0.02 2.04 16 29 H 0.21 5.60 8.06 -2.91 -0.02 5.58 16 30 H 0.05 1.57 8.07 -2.39 -0.02 1.55 16 31 H 0.08 3.06 7.00 -2.39 -0.02 3.04 16 32 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.16 4.06 7.72 -2.91 -0.02 4.04 16 Total: -1.00 -66.32 314.48 0.87 -65.45 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.11 Total: 10.88 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: 4.93 Total: -16.90 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -5.87 Total: -116.01 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 12.99 SS G_CDS: -1.32 Total: 11.67 kcal Total: -66.32 0.87 -65.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159067322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.903 kcal (2) G-P(sol) polarization free energy of solvation -66.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.28 seconds