Wall clock time and date at job start Tue Mar 31 2020 06:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47022 * 227.69866 * 3 2 1 5 5 N 1.46899 * 109.47239 * 179.60269 * 4 3 2 6 6 C 1.46896 * 111.00001 * 297.95894 * 5 4 3 7 7 C 1.50704 * 109.46973 * 292.94525 * 6 5 4 8 8 H 1.07997 * 119.99778 * 354.96489 * 7 6 5 9 9 C 1.37872 * 120.00071 * 174.96844 * 7 6 5 10 10 N 1.31510 * 120.00312 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99882 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47200 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47315 * 119.99813 * 11 9 7 14 14 H 1.48508 * 109.46855 * 239.99876 * 11 9 7 15 15 C 1.46906 * 110.99767 * 61.90962 * 5 4 3 16 16 C 1.50700 * 109.47356 * 66.04447 * 15 5 4 17 17 C 1.34335 * 125.80461 * 94.99453 * 16 15 5 18 18 N 1.38925 * 107.12327 * 179.74220 * 17 16 15 19 19 C 1.37476 * 139.53598 * 180.21773 * 18 17 16 20 20 C 1.30908 * 116.32324 * 180.02562 * 19 18 17 21 21 S 1.75779 * 109.81853 * 0.02562 * 20 19 18 22 22 C 1.35143 * 106.52885 * 0.24654 * 18 17 16 23 23 N 1.32358 * 108.82482 * 359.97438 * 22 18 17 24 24 H 1.08998 * 109.46664 * 107.69799 * 3 2 1 25 25 H 1.09003 * 109.46945 * 347.69994 * 3 2 1 26 26 H 1.08997 * 109.47237 * 59.60162 * 4 3 2 27 27 H 1.09001 * 109.46905 * 299.60494 * 4 3 2 28 28 H 1.08999 * 109.47581 * 52.94462 * 6 5 4 29 29 H 1.09002 * 109.47164 * 172.94700 * 6 5 4 30 30 H 0.97003 * 120.00472 * 180.02562 * 10 9 7 31 31 H 1.09003 * 109.46567 * 306.04613 * 15 5 4 32 32 H 1.08996 * 109.46832 * 186.04828 * 15 5 4 33 33 H 1.08000 * 126.43883 * 0.02562 * 17 16 15 34 34 H 1.08004 * 121.84148 * 0.05355 * 19 18 17 35 35 H 1.08004 * 125.09246 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9717 1.0669 5 7 4.5865 0.9653 1.0734 6 6 5.1056 -0.3648 1.4185 7 6 4.7607 -0.6826 2.8507 8 1 4.2832 0.0629 3.4693 9 6 5.0549 -1.9248 3.3714 10 7 5.6370 -2.8324 2.6183 11 14 4.6268 -2.3189 5.1465 12 1 3.9837 -1.1369 5.7747 13 1 3.6912 -3.4714 5.1859 14 1 5.8658 -2.6613 5.8902 15 6 5.1206 1.4203 -0.2173 16 6 4.7693 2.8712 -0.4230 17 6 5.5556 3.9197 -0.1280 18 7 4.8552 5.0674 -0.4775 19 6 5.0142 6.4329 -0.4696 20 6 4.0104 7.1369 -0.9285 21 16 2.7125 6.0648 -1.4342 22 6 3.6643 4.6570 -0.9672 23 7 3.6195 3.3347 -0.9285 24 1 2.9711 0.3132 -0.9790 25 1 2.9718 -1.0033 0.2189 26 1 2.7485 0.6632 2.0450 27 1 2.7595 1.9769 0.8440 28 1 4.6574 -1.1112 0.7627 29 1 6.1885 -0.3756 1.2945 30 1 5.8436 -3.7066 2.9845 31 1 4.6871 0.8241 -1.0203 32 1 6.2044 1.3045 -0.2231 33 1 6.5479 3.8781 0.2964 34 1 5.9177 6.8993 -0.1052 35 1 3.9835 8.2150 -0.9869 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171685421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:45 Heat of formation + Delta-G solvation = 138.501679 kcal Electronic energy + Delta-G solvation = -20039.975531 eV Core-core repulsion = 16973.923549 eV Total energy + Delta-G solvation = -3066.051982 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.58484 -37.95945 -36.46490 -35.64579 -32.66709 -30.87208 -30.74541 -29.52900 -27.10918 -25.20661 -24.10982 -23.48083 -20.90239 -20.69811 -19.35923 -18.39411 -17.28343 -16.27005 -16.08859 -15.89864 -15.13950 -14.96398 -14.59097 -14.40714 -13.98055 -13.74925 -13.48402 -13.27440 -12.75666 -12.14666 -11.98473 -11.88128 -11.82490 -11.44703 -11.38651 -11.16064 -11.06303 -10.70415 -10.63243 -10.50245 -10.08979 -10.03388 -9.86875 -9.27904 -8.76529 -8.46095 -7.73085 -7.33411 -6.06407 -4.07336 0.81267 0.84035 1.50653 2.18695 2.53020 2.95124 3.27007 3.30538 3.30974 3.39098 3.43832 4.35910 4.40956 4.54051 4.59870 4.89300 5.02421 5.18374 5.29782 5.32341 5.45252 5.67263 5.75637 5.92718 6.01870 6.04509 6.17180 6.45048 6.57070 6.78370 6.86466 7.17673 7.27746 7.76251 7.81681 7.96686 8.07780 8.12257 8.46019 9.01155 9.57768 11.03902 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.004165 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.532297 B = 6721.488141 C = 7513.255311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.230 3.770 3 C -0.070 4.070 4 C 0.075 3.925 5 N -0.523 5.523 6 C 0.185 3.815 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.058 3.942 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.125 3.875 16 C 0.069 3.931 17 C -0.036 4.036 18 N -0.412 5.412 19 C 0.058 3.942 20 C -0.233 4.233 21 S 0.171 5.829 22 C 0.132 3.868 23 N -0.446 5.446 24 H 0.102 0.898 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.007 0.993 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.184 0.816 34 H 0.179 0.821 35 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 18.774 -8.733 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.087 4.087 3 C -0.112 4.112 4 C -0.055 4.055 5 N -0.246 5.246 6 C 0.061 3.939 7 C -0.545 4.545 8 H 0.083 0.917 9 C -0.143 4.143 10 N -0.537 5.537 11 Si 0.721 3.279 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.004 4.004 16 C -0.062 4.062 17 C -0.168 4.168 18 N -0.093 5.093 19 C -0.072 4.072 20 C -0.370 4.370 21 S 0.420 5.580 22 C -0.234 4.234 23 N -0.170 5.170 24 H 0.120 0.880 25 H 0.136 0.864 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.025 0.975 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.201 0.799 34 H 0.196 0.804 35 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.515 18.645 -9.130 20.816 hybrid contribution 2.118 -0.517 1.262 2.519 sum 0.603 18.129 -7.868 19.772 Atomic orbital electron populations 1.81097 1.13242 1.10225 1.09966 1.29244 0.95268 0.92008 0.92160 1.20178 0.81636 1.05606 1.03774 1.22012 0.88659 0.97144 0.97709 1.62401 1.05593 1.30955 1.25672 1.19889 0.95566 0.81915 0.96553 1.21161 1.39181 0.97990 0.96197 0.91746 1.24936 0.95314 0.96238 0.97843 1.69943 1.42314 1.05376 1.36034 0.86511 0.78059 0.78341 0.84964 1.19664 1.21129 1.21066 1.20479 1.00355 0.86657 0.92905 1.20838 0.89492 0.96379 0.99471 1.22622 1.01235 0.81689 1.11242 1.43886 1.14961 1.05312 1.45110 1.20364 1.02243 0.80729 1.03821 1.25013 0.97329 1.04801 1.09884 1.84750 1.15123 0.88355 1.69769 1.26140 0.90955 0.97316 1.09021 1.70536 1.22944 1.02899 1.20623 0.88004 0.86391 0.89511 0.91158 0.97536 0.95076 0.92942 0.93162 0.89236 0.79866 0.80362 0.79025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.36 18.54 42.15 0.78 -8.58 16 2 C 0.23 4.22 15.43 -20.76 -0.32 3.90 16 3 C -0.07 -1.19 5.05 -29.52 -0.15 -1.34 16 4 C 0.08 1.39 4.93 -3.83 -0.02 1.37 16 5 N -0.52 -10.02 4.69 -237.52 -1.11 -11.13 16 6 C 0.19 4.23 4.53 -4.98 -0.02 4.21 16 7 C -0.51 -13.14 8.39 -34.44 -0.29 -13.43 16 8 H 0.06 1.70 7.38 -52.49 -0.39 1.31 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -25.06 13.29 55.43 0.74 -24.32 16 11 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.13 1.99 5.28 -4.97 -0.03 1.97 16 16 C 0.07 1.06 5.80 -83.08 -0.48 0.58 16 17 C -0.04 -0.48 11.93 -15.71 -0.19 -0.67 16 18 N -0.41 -5.14 3.19 -63.78 -0.20 -5.34 16 19 C 0.06 0.49 11.26 -16.71 -0.19 0.30 16 20 C -0.23 -1.66 11.11 29.04 0.32 -1.34 16 21 S 0.17 1.75 23.37 -107.50 -2.51 -0.76 16 22 C 0.13 1.88 8.92 -88.71 -0.79 1.09 16 23 N -0.45 -7.34 10.24 -9.77 -0.10 -7.44 16 24 H 0.10 1.56 6.34 -51.93 -0.33 1.24 16 25 H 0.12 2.12 6.28 -51.93 -0.33 1.80 16 26 H 0.09 1.77 6.98 -51.93 -0.36 1.41 16 27 H 0.07 1.31 6.41 -51.93 -0.33 0.98 16 28 H 0.01 0.16 6.01 -51.93 -0.31 -0.15 16 29 H 0.03 0.75 7.91 -51.93 -0.41 0.34 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.05 0.78 6.07 -51.93 -0.32 0.46 16 32 H 0.09 1.31 7.92 -51.93 -0.41 0.90 16 33 H 0.18 1.95 8.06 -52.49 -0.42 1.52 16 34 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.19 0.63 8.06 -52.48 -0.42 0.21 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -31.65 316.05 -8.51 -40.15 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -3.59 Total: -1.42 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.25 Total: -1.90 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.10 Total: -56.81 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.51 Total: -0.76 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.65 -8.51 -40.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171685421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.656 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds