Wall clock time and date at job start Tue Mar 31 2020 06:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47022 * 227.69866 * 3 2 1 5 5 N 1.46899 * 109.47239 * 179.60269 * 4 3 2 6 6 C 1.46896 * 111.00001 * 297.95894 * 5 4 3 7 7 C 1.50704 * 109.46973 * 292.94525 * 6 5 4 8 8 H 1.07997 * 119.99778 * 354.96489 * 7 6 5 9 9 C 1.37872 * 120.00071 * 174.96844 * 7 6 5 10 10 N 1.31510 * 120.00312 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99882 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47200 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47315 * 119.99813 * 11 9 7 14 14 H 1.48508 * 109.46855 * 239.99876 * 11 9 7 15 15 C 1.46906 * 110.99767 * 61.90962 * 5 4 3 16 16 C 1.50700 * 109.47356 * 66.04447 * 15 5 4 17 17 C 1.34335 * 125.80461 * 94.99453 * 16 15 5 18 18 N 1.38925 * 107.12327 * 179.74220 * 17 16 15 19 19 C 1.37476 * 139.53598 * 180.21773 * 18 17 16 20 20 C 1.30908 * 116.32324 * 180.02562 * 19 18 17 21 21 S 1.75779 * 109.81853 * 0.02562 * 20 19 18 22 22 C 1.35143 * 106.52885 * 0.24654 * 18 17 16 23 23 N 1.32358 * 108.82482 * 359.97438 * 22 18 17 24 24 H 1.08998 * 109.46664 * 107.69799 * 3 2 1 25 25 H 1.09003 * 109.46945 * 347.69994 * 3 2 1 26 26 H 1.08997 * 109.47237 * 59.60162 * 4 3 2 27 27 H 1.09001 * 109.46905 * 299.60494 * 4 3 2 28 28 H 1.08999 * 109.47581 * 52.94462 * 6 5 4 29 29 H 1.09002 * 109.47164 * 172.94700 * 6 5 4 30 30 H 0.97003 * 120.00472 * 180.02562 * 10 9 7 31 31 H 1.09003 * 109.46567 * 306.04613 * 15 5 4 32 32 H 1.08996 * 109.46832 * 186.04828 * 15 5 4 33 33 H 1.08000 * 126.43883 * 0.02562 * 17 16 15 34 34 H 1.08004 * 121.84148 * 0.05355 * 19 18 17 35 35 H 1.08004 * 125.09246 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9717 1.0669 5 7 4.5865 0.9653 1.0734 6 6 5.1056 -0.3648 1.4185 7 6 4.7607 -0.6826 2.8507 8 1 4.2832 0.0629 3.4693 9 6 5.0549 -1.9248 3.3714 10 7 5.6370 -2.8324 2.6183 11 14 4.6268 -2.3189 5.1465 12 1 3.9837 -1.1369 5.7747 13 1 3.6912 -3.4714 5.1859 14 1 5.8658 -2.6613 5.8902 15 6 5.1206 1.4203 -0.2173 16 6 4.7693 2.8712 -0.4230 17 6 5.5556 3.9197 -0.1280 18 7 4.8552 5.0674 -0.4775 19 6 5.0142 6.4329 -0.4696 20 6 4.0104 7.1369 -0.9285 21 16 2.7125 6.0648 -1.4342 22 6 3.6643 4.6570 -0.9672 23 7 3.6195 3.3347 -0.9285 24 1 2.9711 0.3132 -0.9790 25 1 2.9718 -1.0033 0.2189 26 1 2.7485 0.6632 2.0450 27 1 2.7595 1.9769 0.8440 28 1 4.6574 -1.1112 0.7627 29 1 6.1885 -0.3756 1.2945 30 1 5.8436 -3.7066 2.9845 31 1 4.6871 0.8241 -1.0203 32 1 6.2044 1.3045 -0.2231 33 1 6.5479 3.8781 0.2964 34 1 5.9177 6.8993 -0.1052 35 1 3.9835 8.2150 -0.9869 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171685421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:44 Heat of formation + Delta-G solvation = 119.367994 kcal Electronic energy + Delta-G solvation = -20040.805230 eV Core-core repulsion = 16973.923549 eV Total energy + Delta-G solvation = -3066.881681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.52230 -39.38893 -37.58562 -37.03868 -34.64251 -32.19069 -31.63721 -30.96140 -28.66530 -26.59387 -25.27904 -24.88256 -22.28827 -21.58845 -20.63846 -19.21784 -18.82463 -18.18102 -17.19067 -16.81993 -16.59706 -16.25726 -15.81611 -15.69011 -15.28381 -15.02443 -14.90204 -14.43923 -14.16027 -13.65971 -13.54570 -13.41185 -13.01957 -12.90272 -12.80151 -12.54214 -12.49236 -12.33382 -12.14804 -11.90304 -11.54148 -11.36117 -11.26481 -11.03882 -10.50827 -9.71417 -8.90232 -8.60094 -8.10827 -6.16889 -0.03315 0.07889 0.81347 1.36974 1.43647 1.47251 1.57348 1.71612 1.74540 1.78913 1.85607 2.47461 3.04055 3.23540 3.48780 3.56988 3.81061 4.18203 4.23571 4.27537 4.39770 4.47714 4.54915 4.65365 4.74533 4.85375 4.97767 5.18588 5.21094 5.41610 5.43476 5.56179 5.77372 5.99319 6.16690 6.34714 6.57550 6.69322 6.82109 6.99100 7.51734 8.98783 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.019088 B = 0.004165 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.532297 B = 6721.488141 C = 7513.255311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.246 3.754 3 C -0.056 4.056 4 C 0.085 3.915 5 N -0.527 5.527 6 C 0.199 3.801 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.949 3.051 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.280 1.280 15 C 0.130 3.870 16 C 0.041 3.959 17 C -0.031 4.031 18 N -0.412 5.412 19 C 0.035 3.965 20 C -0.204 4.204 21 S 0.168 5.832 22 C 0.104 3.896 23 N -0.485 5.485 24 H 0.122 0.878 25 H 0.110 0.890 26 H 0.063 0.937 27 H 0.071 0.929 28 H -0.003 1.003 29 H 0.017 0.983 30 H 0.262 0.738 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.208 0.792 34 H 0.217 0.783 35 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.372 21.211 -8.739 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.071 4.071 3 C -0.097 4.097 4 C -0.045 4.045 5 N -0.250 5.250 6 C 0.073 3.927 7 C -0.552 4.552 8 H 0.074 0.926 9 C -0.186 4.186 10 N -0.568 5.568 11 Si 0.776 3.224 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.206 1.206 15 C 0.001 3.999 16 C -0.089 4.089 17 C -0.164 4.164 18 N -0.092 5.092 19 C -0.092 4.092 20 C -0.340 4.340 21 S 0.416 5.584 22 C -0.262 4.262 23 N -0.210 5.210 24 H 0.139 0.861 25 H 0.128 0.872 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.015 0.985 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.225 0.775 34 H 0.233 0.767 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.928 21.127 -9.141 23.038 hybrid contribution 1.925 -1.093 1.204 2.520 sum 0.997 20.033 -7.937 21.571 Atomic orbital electron populations 1.81103 1.14042 1.11139 1.10983 1.29371 0.95309 0.91141 0.91257 1.20078 0.80714 1.04685 1.04273 1.21818 0.88455 0.97398 0.96856 1.62260 1.05783 1.28660 1.28252 1.19566 0.94590 0.83551 0.94947 1.21446 1.38398 0.97748 0.97634 0.92595 1.25602 0.95463 0.96332 1.01180 1.70030 1.43510 1.05718 1.37507 0.85638 0.77818 0.77937 0.81055 1.19432 1.21127 1.20568 1.20448 1.00845 0.87540 0.91049 1.20699 0.90361 0.96309 1.01515 1.22925 1.01750 0.81688 1.10068 1.44122 1.14122 1.06674 1.44300 1.21048 1.04279 0.79001 1.04879 1.25593 0.94945 1.06222 1.07275 1.84787 1.16261 0.87742 1.69592 1.26700 0.92474 0.97574 1.09414 1.70395 1.23848 1.04548 1.22210 0.86069 0.87186 0.91820 0.91021 0.98520 0.96453 0.92900 0.92894 0.88126 0.77539 0.76657 0.74641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -19.82 18.54 20.01 0.37 -19.45 16 2 C 0.25 9.02 15.43 89.44 1.38 10.40 16 3 C -0.06 -1.90 5.05 28.79 0.15 -1.75 16 4 C 0.09 3.20 4.93 86.30 0.43 3.62 16 5 N -0.53 -20.30 4.69 -905.36 -4.24 -24.54 16 6 C 0.20 9.21 4.53 85.56 0.39 9.60 16 7 C -0.51 -26.91 8.39 25.60 0.21 -26.70 16 8 H 0.06 2.98 7.38 -2.91 -0.02 2.95 16 9 C 0.01 0.68 5.46 84.65 0.46 1.15 16 10 N -0.93 -52.18 13.29 21.44 0.28 -51.90 16 11 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 13 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 C 0.13 4.11 5.28 85.56 0.45 4.56 16 16 C 0.04 1.26 5.80 41.35 0.24 1.50 16 17 C -0.03 -0.79 11.93 82.68 0.99 0.20 16 18 N -0.41 -9.47 3.19 -355.69 -1.13 -10.60 16 19 C 0.03 0.46 11.26 83.86 0.94 1.41 16 20 C -0.20 -2.11 11.11 67.87 0.75 -1.35 16 21 S 0.17 3.13 23.37 -56.49 -1.32 1.81 16 22 C 0.10 2.88 8.92 179.68 1.60 4.48 16 23 N -0.48 -15.89 10.24 -184.83 -1.89 -17.78 16 24 H 0.12 3.69 6.34 -2.39 -0.02 3.68 16 25 H 0.11 4.01 6.28 -2.39 -0.01 4.00 16 26 H 0.06 2.66 6.98 -2.39 -0.02 2.65 16 27 H 0.07 2.71 6.41 -2.39 -0.02 2.69 16 28 H 0.00 -0.14 6.01 -2.39 -0.01 -0.15 16 29 H 0.02 0.85 7.91 -2.39 -0.02 0.83 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.05 1.63 6.07 -2.39 -0.01 1.61 16 32 H 0.10 2.90 7.92 -2.39 -0.02 2.88 16 33 H 0.21 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.22 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.24 0.22 8.06 -2.91 -0.02 0.20 16 Total: -1.00 -68.98 316.05 3.22 -65.76 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 1.13 Total: 4.38 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 8.00 Total: 7.11 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -6.61 Total: -124.27 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.32 Total: 1.81 kcal Total: -68.98 3.22 -65.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171685421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.133 kcal (2) G-P(sol) polarization free energy of solvation -68.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds