Wall clock time and date at job start Tue Mar 31 2020 08:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 111.00026 * 2 1 4 4 C 1.50698 * 109.46832 * 66.05031 * 3 2 1 5 5 H 1.08000 * 120.00273 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99988 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00240 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99574 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.46933 * 90.00591 * 8 6 4 10 10 H 1.48500 * 109.47047 * 209.99861 * 8 6 4 11 11 H 1.48492 * 109.47514 * 330.00389 * 8 6 4 12 12 C 1.46905 * 110.99612 * 236.04724 * 2 1 3 13 13 C 1.50701 * 109.47115 * 293.95276 * 12 2 1 14 14 C 1.36125 * 120.10824 * 259.99665 * 13 12 2 15 15 C 1.39277 * 121.08563 * 179.72213 * 14 13 12 16 16 C 1.36310 * 120.84931 * 0.26589 * 15 14 13 17 17 Cl 1.73599 * 120.20892 * 179.97438 * 16 15 14 18 18 C 1.40511 * 119.58547 * 0.02562 * 16 15 14 19 19 C 1.40731 * 121.37992 * 180.02562 * 18 16 15 20 20 C 1.36595 * 118.15013 * 179.97438 * 19 18 16 21 21 C 1.39317 * 119.93926 * 359.97438 * 20 19 18 22 22 N 1.31097 * 121.74978 * 359.97438 * 21 20 19 23 23 C 1.33693 * 121.31742 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.46988 * 183.95318 * 1 2 3 25 25 H 1.09005 * 109.46792 * 303.94860 * 1 2 3 26 26 H 1.08996 * 109.47454 * 63.95148 * 1 2 3 27 27 H 1.08997 * 109.47196 * 186.04735 * 3 2 1 28 28 H 1.09000 * 109.47288 * 306.04861 * 3 2 1 29 29 H 0.96996 * 119.99740 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46595 * 173.95357 * 12 2 1 31 31 H 1.08997 * 109.47002 * 53.95575 * 12 2 1 32 32 H 1.08002 * 119.46246 * 0.02562 * 14 13 12 33 33 H 1.07992 * 119.57890 * 180.27905 * 15 14 13 34 34 H 1.07998 * 120.92729 * 359.96139 * 19 18 16 35 35 H 1.07995 * 120.03078 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.12671 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0741 1.5114 2.0485 6 6 2.0269 3.3494 1.5286 7 7 1.7137 3.9392 2.6615 8 14 3.0000 4.2761 0.2310 9 1 2.0632 4.9798 -0.6815 10 1 3.8863 5.2678 0.8913 11 1 3.8238 3.3175 -0.5484 12 6 1.9954 -0.7660 -1.1377 13 6 1.6369 -2.2204 -0.9729 14 6 2.5588 -3.1013 -0.4963 15 6 2.2476 -4.4487 -0.3305 16 6 1.0099 -4.9242 -0.6469 17 17 0.6402 -6.6070 -0.4344 18 6 0.0356 -4.0441 -1.1473 19 6 -1.2541 -4.4943 -1.4855 20 6 -2.1499 -3.5817 -1.9657 21 6 -1.7749 -2.2475 -2.1076 22 7 -0.5728 -1.8313 -1.7906 23 6 0.3510 -2.6728 -1.3153 24 1 -0.3633 -1.0253 0.0709 25 1 -0.3633 0.5739 0.8525 26 1 -0.3634 0.4513 -0.9232 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9274 -0.8309 29 1 1.9883 4.8553 2.8235 30 1 3.0797 -0.6611 -1.1757 31 1 1.5611 -0.3872 -2.0628 32 1 3.5464 -2.7486 -0.2377 33 1 2.9963 -5.1253 0.0538 34 1 -1.5280 -5.5324 -1.3689 35 1 -3.1482 -3.8939 -2.2343 36 1 -2.4937 -1.5369 -2.4881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177191137.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:05 Heat of formation + Delta-G solvation = 67.018200 kcal Electronic energy + Delta-G solvation = -20322.729626 eV Core-core repulsion = 17219.241431 eV Total energy + Delta-G solvation = -3103.488196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.09279 -37.60446 -37.11912 -36.04688 -33.50836 -32.31863 -30.73628 -30.61252 -27.79164 -26.49109 -24.38911 -23.77635 -23.60573 -21.04193 -19.88018 -18.42032 -17.26532 -17.14325 -16.67235 -15.28801 -15.10000 -14.67689 -14.59609 -14.08931 -13.90808 -13.89321 -13.42053 -13.16874 -12.84830 -12.66608 -12.29629 -11.94521 -11.69626 -11.51886 -11.20795 -11.12700 -11.02460 -10.82964 -10.63038 -10.37866 -10.01981 -9.82862 -9.47959 -9.24176 -8.90155 -8.54636 -8.15918 -7.28396 -6.01776 -3.98614 0.22409 0.69315 1.80649 1.88382 2.78846 3.30727 3.38078 3.40079 3.95632 4.20225 4.44912 4.50230 4.57946 4.62999 4.81971 4.93951 5.12030 5.19130 5.27390 5.32078 5.54250 5.61238 5.75080 5.86537 5.88933 6.06822 6.13504 6.29840 6.35108 6.45585 6.58573 6.68321 6.84823 6.96476 7.06253 7.63289 7.83487 7.96569 8.10388 8.70241 9.07418 9.59980 11.11501 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.025246 B = 0.004057 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.812768 B = 6899.357585 C = 7442.686824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.524 5.524 3 C 0.162 3.838 4 C -0.506 4.506 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.092 3.908 13 C -0.025 4.025 14 C -0.089 4.089 15 C -0.092 4.092 16 C -0.030 4.030 17 Cl -0.070 7.070 18 C -0.095 4.095 19 C -0.062 4.062 20 C -0.170 4.170 21 C 0.125 3.875 22 N -0.448 5.448 23 C 0.142 3.858 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.023 0.977 27 H 0.027 0.973 28 H -0.015 1.015 29 H 0.263 0.737 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 -19.708 -10.871 22.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.248 5.248 3 C 0.036 3.964 4 C -0.544 4.544 5 H 0.098 0.902 6 C -0.133 4.133 7 N -0.541 5.541 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.036 4.036 13 C -0.027 4.027 14 C -0.110 4.110 15 C -0.110 4.110 16 C -0.058 4.058 17 Cl -0.041 7.041 18 C -0.098 4.098 19 C -0.088 4.088 20 C -0.189 4.189 21 C -0.048 4.048 22 N -0.155 5.155 23 C 0.020 3.980 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.003 0.997 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.431 -19.007 -10.382 21.928 hybrid contribution -0.139 -0.095 -1.127 1.140 sum -3.570 -19.102 -11.509 22.585 Atomic orbital electron populations 1.22364 0.87605 0.99820 1.00411 1.62074 1.08198 1.16082 1.38407 1.20201 0.95077 0.83992 0.97093 1.21031 1.35365 0.97161 1.00889 0.90205 1.24893 0.95815 0.97320 0.95319 1.69894 1.47019 1.13211 1.23964 0.86858 0.80630 0.80045 0.82174 1.20363 1.21205 1.19176 1.20995 0.99912 0.88335 0.94382 1.19782 0.90737 0.97025 0.95133 1.20753 1.00618 0.91534 0.98101 1.20855 0.95046 0.96278 0.98865 1.20536 0.95278 0.84878 1.05066 1.98349 1.94861 1.15020 1.95839 1.18530 0.94812 0.93937 1.02491 1.21449 0.91725 1.00495 0.95128 1.21885 1.00959 0.94626 1.01475 1.23050 0.93438 0.94212 0.94116 1.68386 1.01826 1.35861 1.09457 1.18641 0.94038 0.87915 0.97369 0.93433 0.91339 0.95872 0.95461 0.99734 0.92712 0.90437 0.93583 0.84024 0.84497 0.84313 0.84480 0.82252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.97 7.87 60.07 0.47 1.44 16 2 N -0.52 -11.39 4.74 -245.82 -1.17 -12.56 16 3 C 0.16 4.02 3.79 -4.98 -0.02 4.00 16 4 C -0.51 -14.62 9.01 -34.44 -0.31 -14.93 16 5 H 0.08 2.53 7.37 -52.49 -0.39 2.14 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 8 Si 0.88 21.66 27.47 -169.99 -4.67 17.00 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 12 C 0.09 1.63 4.99 -4.97 -0.02 1.60 16 13 C -0.03 -0.40 5.14 -104.51 -0.54 -0.93 16 14 C -0.09 -1.18 9.56 -39.95 -0.38 -1.56 16 15 C -0.09 -1.07 9.73 -39.89 -0.39 -1.46 16 16 C -0.03 -0.37 6.32 -39.42 -0.25 -0.61 16 17 Cl -0.07 -0.71 27.56 -51.86 -1.43 -2.14 16 18 C -0.10 -1.26 5.74 -106.77 -0.61 -1.88 16 19 C -0.06 -0.68 9.53 -39.23 -0.37 -1.05 16 20 C -0.17 -1.65 10.03 -39.77 -0.40 -2.05 16 21 C 0.12 1.45 11.15 -17.46 -0.19 1.25 16 22 N -0.45 -6.77 6.40 -10.98 -0.07 -6.84 16 23 C 0.14 2.17 5.39 -84.86 -0.46 1.71 16 24 H 0.05 0.93 4.97 -51.93 -0.26 0.67 16 25 H 0.07 1.59 6.76 -51.93 -0.35 1.24 16 26 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 27 H 0.03 0.67 6.99 -51.93 -0.36 0.31 16 28 H -0.02 -0.37 7.55 -51.93 -0.39 -0.77 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.08 1.27 7.76 -51.93 -0.40 0.86 16 31 H 0.05 0.83 7.84 -51.93 -0.41 0.42 16 32 H 0.14 1.62 8.00 -52.49 -0.42 1.20 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.14 1.24 7.06 -52.49 -0.37 0.87 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -32.32 309.11 -9.66 -41.98 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.19 Total: -2.40 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -3.57 Total: -12.58 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.46 Total: -46.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.43 Total: -2.14 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.32 -9.66 -41.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191137.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.999 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds