Wall clock time and date at job start Tue Mar 31 2020 08:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 111.00026 * 2 1 4 4 C 1.50698 * 109.46832 * 66.05031 * 3 2 1 5 5 H 1.08000 * 120.00273 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99988 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00240 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 119.99574 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.46933 * 90.00591 * 8 6 4 10 10 H 1.48500 * 109.47047 * 209.99861 * 8 6 4 11 11 H 1.48492 * 109.47514 * 330.00389 * 8 6 4 12 12 C 1.46905 * 110.99612 * 236.04724 * 2 1 3 13 13 C 1.50701 * 109.47115 * 293.95276 * 12 2 1 14 14 C 1.36125 * 120.10824 * 259.99665 * 13 12 2 15 15 C 1.39277 * 121.08563 * 179.72213 * 14 13 12 16 16 C 1.36310 * 120.84931 * 0.26589 * 15 14 13 17 17 Cl 1.73599 * 120.20892 * 179.97438 * 16 15 14 18 18 C 1.40511 * 119.58547 * 0.02562 * 16 15 14 19 19 C 1.40731 * 121.37992 * 180.02562 * 18 16 15 20 20 C 1.36595 * 118.15013 * 179.97438 * 19 18 16 21 21 C 1.39317 * 119.93926 * 359.97438 * 20 19 18 22 22 N 1.31097 * 121.74978 * 359.97438 * 21 20 19 23 23 C 1.33693 * 121.31742 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.46988 * 183.95318 * 1 2 3 25 25 H 1.09005 * 109.46792 * 303.94860 * 1 2 3 26 26 H 1.08996 * 109.47454 * 63.95148 * 1 2 3 27 27 H 1.08997 * 109.47196 * 186.04735 * 3 2 1 28 28 H 1.09000 * 109.47288 * 306.04861 * 3 2 1 29 29 H 0.96996 * 119.99740 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46595 * 173.95357 * 12 2 1 31 31 H 1.08997 * 109.47002 * 53.95575 * 12 2 1 32 32 H 1.08002 * 119.46246 * 0.02562 * 14 13 12 33 33 H 1.07992 * 119.57890 * 180.27905 * 15 14 13 34 34 H 1.07998 * 120.92729 * 359.96139 * 19 18 16 35 35 H 1.07995 * 120.03078 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.12671 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0741 1.5114 2.0485 6 6 2.0269 3.3494 1.5286 7 7 1.7137 3.9392 2.6615 8 14 3.0000 4.2761 0.2310 9 1 2.0632 4.9798 -0.6815 10 1 3.8863 5.2678 0.8913 11 1 3.8238 3.3175 -0.5484 12 6 1.9954 -0.7660 -1.1377 13 6 1.6369 -2.2204 -0.9729 14 6 2.5588 -3.1013 -0.4963 15 6 2.2476 -4.4487 -0.3305 16 6 1.0099 -4.9242 -0.6469 17 17 0.6402 -6.6070 -0.4344 18 6 0.0356 -4.0441 -1.1473 19 6 -1.2541 -4.4943 -1.4855 20 6 -2.1499 -3.5817 -1.9657 21 6 -1.7749 -2.2475 -2.1076 22 7 -0.5728 -1.8313 -1.7906 23 6 0.3510 -2.6728 -1.3153 24 1 -0.3633 -1.0253 0.0709 25 1 -0.3633 0.5739 0.8525 26 1 -0.3634 0.4513 -0.9232 27 1 3.0797 1.3444 -0.1083 28 1 1.5611 1.9274 -0.8309 29 1 1.9883 4.8553 2.8235 30 1 3.0797 -0.6611 -1.1757 31 1 1.5611 -0.3872 -2.0628 32 1 3.5464 -2.7486 -0.2377 33 1 2.9963 -5.1253 0.0538 34 1 -1.5280 -5.5324 -1.3689 35 1 -3.1482 -3.8939 -2.2343 36 1 -2.4937 -1.5369 -2.4881 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177191137.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:04 Heat of formation + Delta-G solvation = 46.696267 kcal Electronic energy + Delta-G solvation = -20323.610852 eV Core-core repulsion = 17219.241431 eV Total energy + Delta-G solvation = -3104.369421 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 3.49 seconds Orbital eigenvalues (eV) -42.05219 -38.71451 -38.29458 -37.19768 -34.93122 -34.09618 -31.79090 -31.64571 -29.72878 -27.93071 -25.62693 -25.01838 -24.69337 -22.58675 -21.34806 -19.32443 -19.02998 -18.09341 -17.99963 -16.78633 -16.45114 -16.03293 -15.83386 -15.41599 -15.24486 -15.15800 -14.58813 -14.36914 -14.15169 -13.88631 -13.79112 -13.47457 -13.02656 -12.85303 -12.70732 -12.56070 -12.31761 -12.15754 -11.93869 -11.82894 -11.79192 -11.44226 -11.20603 -10.78338 -10.46240 -9.82474 -9.21650 -8.93895 -8.27284 -6.30822 -0.70892 -0.22387 0.86511 0.97698 1.35922 1.37484 1.48858 1.86455 2.35753 2.96779 3.05888 3.29891 3.44440 3.59499 3.70929 3.74973 3.96194 4.01523 4.37174 4.38358 4.41637 4.53396 4.64247 4.70210 4.78603 4.80552 4.93132 4.96545 5.01957 5.09518 5.19739 5.22047 5.42263 5.45900 5.53924 5.77274 5.99114 6.33669 6.65083 6.74614 6.93134 7.32556 8.89631 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.025246 B = 0.004057 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.812768 B = 6899.357585 C = 7442.686824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.539 5.539 3 C 0.173 3.827 4 C -0.516 4.516 5 H 0.033 0.967 6 C 0.008 3.992 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.246 1.246 12 C 0.099 3.901 13 C -0.060 4.060 14 C -0.082 4.082 15 C -0.096 4.096 16 C -0.029 4.029 17 Cl -0.050 7.050 18 C -0.112 4.112 19 C -0.066 4.066 20 C -0.159 4.159 21 C 0.122 3.878 22 N -0.491 5.491 23 C 0.122 3.878 24 H 0.062 0.938 25 H 0.031 0.969 26 H 0.024 0.976 27 H 0.036 0.964 28 H -0.015 1.015 29 H 0.267 0.733 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.177 0.823 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -21.491 -12.746 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.263 5.263 3 C 0.046 3.954 4 C -0.554 4.554 5 H 0.051 0.949 6 C -0.189 4.189 7 N -0.590 5.590 8 Si 0.772 3.228 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.169 1.169 12 C -0.028 4.028 13 C -0.062 4.062 14 C -0.103 4.103 15 C -0.115 4.115 16 C -0.056 4.056 17 Cl -0.021 7.021 18 C -0.115 4.115 19 C -0.091 4.091 20 C -0.178 4.178 21 C -0.050 4.050 22 N -0.199 5.199 23 C 0.001 3.999 24 H 0.080 0.920 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.002 0.998 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.173 0.827 33 H 0.182 0.818 34 H 0.177 0.823 35 H 0.194 0.806 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.253 -20.826 -12.268 24.389 hybrid contribution -0.340 0.287 -0.509 0.676 sum -3.593 -20.539 -12.777 24.454 Atomic orbital electron populations 1.22145 0.87505 1.00030 0.98650 1.61954 1.08418 1.14646 1.41232 1.19962 0.95432 0.85505 0.94518 1.21232 1.34844 0.97585 1.01745 0.94863 1.25853 0.96971 0.98290 0.97777 1.70053 1.48632 1.13877 1.26440 0.85688 0.79224 0.78744 0.79118 1.19468 1.20514 1.16944 1.20933 1.00190 0.89349 0.92321 1.19688 0.92148 0.95979 0.98359 1.20976 1.00712 0.92016 0.96575 1.21103 0.95647 0.95992 0.98716 1.20710 0.95245 0.85750 1.03935 1.98355 1.94777 1.13353 1.95656 1.18742 0.96214 0.93443 1.03066 1.21767 0.90959 1.01749 0.94665 1.22266 1.02387 0.93441 0.99755 1.23618 0.92764 0.95819 0.92819 1.68328 1.03221 1.36986 1.11400 1.18757 0.94068 0.88964 0.98140 0.91965 0.95013 0.95727 0.94637 0.99771 0.92404 0.89311 0.94221 0.82663 0.81824 0.82269 0.80573 0.79939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.82 7.87 127.69 1.00 3.82 16 2 N -0.54 -23.87 4.74 -931.63 -4.42 -28.29 16 3 C 0.17 8.60 3.79 85.56 0.32 8.93 16 4 C -0.52 -30.85 9.01 25.60 0.23 -30.62 16 5 H 0.03 2.24 7.37 -2.91 -0.02 2.21 16 6 C 0.01 0.49 5.47 84.66 0.46 0.95 16 7 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 8 Si 0.95 44.65 27.47 68.60 1.88 46.54 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 12 C 0.10 3.52 4.99 85.56 0.43 3.95 16 13 C -0.06 -1.87 5.14 -19.79 -0.10 -1.97 16 14 C -0.08 -2.07 9.56 22.03 0.21 -1.86 16 15 C -0.10 -2.06 9.73 22.07 0.21 -1.84 16 16 C -0.03 -0.64 6.32 22.37 0.14 -0.50 16 17 Cl -0.05 -0.91 27.56 -2.72 -0.07 -0.98 16 18 C -0.11 -2.81 5.74 -21.26 -0.12 -2.93 16 19 C -0.07 -1.27 9.53 22.49 0.21 -1.05 16 20 C -0.16 -2.64 10.03 22.15 0.22 -2.42 16 21 C 0.12 2.63 11.15 85.06 0.95 3.58 16 22 N -0.49 -14.63 6.40 -188.65 -1.21 -15.84 16 23 C 0.12 3.66 5.39 40.28 0.22 3.88 16 24 H 0.06 2.51 4.97 -2.39 -0.01 2.50 16 25 H 0.03 1.56 6.76 -2.38 -0.02 1.54 16 26 H 0.02 1.03 7.73 -2.39 -0.02 1.01 16 27 H 0.04 1.71 6.99 -2.39 -0.02 1.69 16 28 H -0.02 -0.76 7.55 -2.39 -0.02 -0.78 16 29 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.09 2.84 7.76 -2.39 -0.02 2.83 16 31 H 0.04 1.44 7.84 -2.39 -0.02 1.42 16 32 H 0.16 3.33 8.00 -2.91 -0.02 3.30 16 33 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.16 2.33 7.06 -2.91 -0.02 2.31 16 35 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -72.60 309.11 1.91 -70.68 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.04 Total: 6.16 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 4.39 Total: -18.11 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -5.33 Total: -104.29 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.07 Total: -0.98 kcal Total: -72.60 1.91 -70.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191137.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.379 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds