Wall clock time and date at job start Tue Mar 31 2020 08:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 O 1.42097 * 108.58117 * 2 1 4 4 O 1.42100 * 108.57931 * 228.97370 * 2 1 3 5 5 C 1.81403 * 101.92025 * 114.48579 * 2 1 3 6 6 C 1.53003 * 109.47344 * 174.49348 * 5 2 1 7 7 C 1.53000 * 115.54764 * 269.07377 * 6 5 2 8 8 C 1.50700 * 109.47234 * 294.84222 * 7 6 5 9 9 O 1.20828 * 119.99564 * 355.13074 * 8 7 6 10 10 O 1.34225 * 120.00070 * 175.14261 * 8 7 6 11 11 C 1.45201 * 116.99983 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47312 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47234 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99928 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99684 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99899 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47139 * 90.00272 * 17 15 13 19 19 H 1.48503 * 109.47032 * 210.00418 * 17 15 13 20 20 H 1.48502 * 109.47268 * 329.99971 * 17 15 13 21 21 C 1.52995 * 117.50223 * 123.36013 * 6 5 2 22 22 C 1.52999 * 60.00202 * 252.51571 * 21 6 5 23 23 H 1.09000 * 109.47428 * 65.51348 * 1 2 3 24 24 H 1.09004 * 109.47266 * 185.51300 * 1 2 3 25 25 H 1.08997 * 109.47605 * 305.51385 * 1 2 3 26 26 H 1.08995 * 109.47098 * 294.49453 * 5 2 1 27 27 H 1.08999 * 109.47264 * 54.49455 * 5 2 1 28 28 H 1.09007 * 109.47401 * 54.84562 * 7 6 5 29 29 H 1.08998 * 109.46655 * 174.84243 * 7 6 5 30 30 H 1.09003 * 109.46959 * 299.99870 * 11 10 8 31 31 H 1.09000 * 109.47266 * 59.99323 * 11 10 8 32 32 H 1.09003 * 109.46697 * 299.99903 * 12 11 10 33 33 H 1.09000 * 109.47093 * 59.99724 * 12 11 10 34 34 H 0.96999 * 119.99617 * 180.02562 * 16 15 13 35 35 H 1.09003 * 117.49752 * 0.02562 * 21 6 5 36 36 H 1.08992 * 117.49845 * 145.02049 * 21 6 5 37 37 H 1.09005 * 117.49753 * 252.51230 * 22 21 6 38 38 H 1.08999 * 117.50055 * 107.48766 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.6989 -0.9455 1.7422 7 6 4.2177 -2.3062 1.2728 8 6 3.6662 -3.3889 2.1643 9 8 3.0055 -3.0959 3.1326 10 8 3.9091 -4.6786 1.8828 11 6 3.3460 -5.6676 2.7846 12 6 3.7256 -7.0699 2.3049 13 6 3.1418 -8.0963 3.2413 14 1 2.5579 -7.7800 4.0929 15 6 3.3521 -9.4392 3.0099 16 7 4.0626 -9.8243 1.9725 17 14 2.6277 -10.7114 4.1702 18 1 1.2731 -11.0966 3.6991 19 1 3.5022 -11.9114 4.1973 20 1 2.5321 -10.1377 5.5366 21 6 4.4057 -0.2912 2.9309 22 6 4.6020 0.2695 1.5209 23 1 -0.3634 0.4259 -0.9352 24 1 -0.3634 -1.0229 0.0987 25 1 -0.3634 0.5969 0.8364 26 1 1.8468 -0.0684 2.4065 27 1 1.6797 -1.6954 1.7043 28 1 3.8973 -2.4828 0.2459 29 1 5.3066 -2.3159 1.3204 30 1 3.7380 -5.5082 3.7891 31 1 2.2604 -5.5702 2.7986 32 1 3.3332 -7.2290 1.3005 33 1 4.8112 -7.1676 2.2906 34 1 4.2103 -10.7691 1.8096 35 1 3.7947 0.2885 3.6228 36 1 5.2404 -0.8301 3.3789 37 1 5.5659 0.0995 1.0414 38 1 4.1202 1.2184 1.2850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177446632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:12 Heat of formation + Delta-G solvation = -141.864532 kcal Electronic energy + Delta-G solvation = -21161.617439 eV Core-core repulsion = 17711.513444 eV Total energy + Delta-G solvation = -3450.103995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.24959 -38.33761 -37.19871 -36.22310 -35.93337 -33.36531 -30.74392 -30.29672 -29.67012 -28.77392 -25.00829 -22.76204 -21.77120 -20.73190 -19.61813 -18.97943 -17.40099 -16.76643 -16.63411 -16.47260 -16.12761 -15.98951 -15.61242 -15.11250 -14.63973 -14.49508 -13.67436 -13.54353 -13.53029 -12.97962 -12.75761 -12.59807 -12.37935 -12.22645 -12.17748 -11.96182 -11.67097 -11.49036 -11.22019 -11.17687 -11.05256 -10.77033 -10.72038 -10.69449 -10.22728 -9.86607 -9.66224 -9.57758 -9.30904 -8.46130 -6.11977 -4.16594 -0.29843 2.45900 2.55260 2.97921 3.26796 3.32076 3.33141 3.36675 3.62188 3.71776 4.14471 4.25635 4.37360 4.43370 4.46246 4.59679 4.66573 5.00527 5.18694 5.24514 5.30385 5.31989 5.44607 5.50017 5.58430 5.72484 5.77679 5.90825 6.05994 6.07433 6.61495 6.98588 7.54488 7.60846 7.85111 8.17493 8.25319 8.88992 9.47835 10.99511 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.027784 B = 0.003120 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.518699 B = 8972.204818 C = 9346.496935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.415 3.585 3 O -0.941 6.941 4 O -0.933 6.933 5 C -0.564 4.564 6 C -0.109 4.109 7 C -0.091 4.091 8 C 0.455 3.545 9 O -0.513 6.513 10 O -0.357 6.357 11 C 0.075 3.925 12 C 0.023 3.977 13 C -0.527 4.527 14 H 0.059 0.941 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.142 4.142 22 C -0.188 4.188 23 H 0.129 0.871 24 H 0.130 0.870 25 H 0.127 0.873 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.264 0.736 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 22.270 -2.586 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.598 3.402 3 O -0.938 6.938 4 O -0.930 6.930 5 C -0.693 4.693 6 C -0.110 4.110 7 C -0.129 4.129 8 C 0.298 3.702 9 O -0.403 6.403 10 O -0.273 6.273 11 C 0.003 3.997 12 C -0.014 4.014 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.527 5.527 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.180 4.180 22 C -0.225 4.225 23 H 0.147 0.853 24 H 0.149 0.851 25 H 0.146 0.854 26 H 0.155 0.845 27 H 0.158 0.842 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.127 0.873 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.388 22.438 -3.052 22.897 hybrid contribution -1.169 -1.195 1.404 2.183 sum -4.557 21.243 -1.648 21.788 Atomic orbital electron populations 1.30312 1.27261 1.11807 1.11641 1.08108 0.78111 0.75980 0.78011 1.93566 1.78859 1.34702 1.86658 1.93606 1.78728 1.66668 1.53974 1.29883 1.02579 1.14526 1.22317 1.20430 0.89550 0.93576 1.07446 1.21041 1.02935 0.88355 1.00527 1.23418 0.78051 0.84257 0.84509 1.90609 1.37396 1.83828 1.28459 1.86541 1.70236 1.15683 1.54861 1.23629 0.97238 0.87476 0.91355 1.19176 0.98248 0.86136 0.97801 1.20971 1.33812 0.90752 1.11027 0.92312 1.24987 0.95059 0.98585 0.95527 1.69972 1.38849 1.16229 1.27688 0.86471 0.78981 0.80749 0.81083 1.20482 1.21034 1.19746 1.23045 1.02370 1.01930 0.90637 1.23679 1.01445 0.96807 1.00598 0.85283 0.85148 0.85404 0.84501 0.84197 0.86147 0.86823 0.92365 0.92406 0.95302 0.95341 0.92680 0.88056 0.88037 0.87288 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.50 10.62 101.05 1.07 -2.43 16 2 S 2.42 20.40 5.06 -107.50 -0.54 19.85 16 3 O -0.94 -10.11 16.18 -57.83 -0.94 -11.05 16 4 O -0.93 -11.39 17.61 -57.83 -1.02 -12.40 16 5 C -0.56 -4.92 5.47 37.16 0.20 -4.72 16 6 C -0.11 -1.15 1.09 -154.51 -0.17 -1.31 16 7 C -0.09 -1.11 5.69 -27.88 -0.16 -1.27 16 8 C 0.45 7.52 7.52 36.01 0.27 7.79 16 9 O -0.51 -9.22 14.64 -18.75 -0.27 -9.49 16 10 O -0.36 -7.04 10.22 -39.25 -0.40 -7.44 16 11 C 0.08 1.66 5.40 37.16 0.20 1.86 16 12 C 0.02 0.61 5.35 -27.89 -0.15 0.46 16 13 C -0.53 -14.78 9.11 -34.44 -0.31 -15.09 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.14 -1.35 9.81 -26.73 -0.26 -1.61 16 22 C -0.19 -1.69 9.33 -26.73 -0.25 -1.94 16 23 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.14 0.85 7.87 -51.93 -0.41 0.44 16 27 H 0.14 1.28 6.83 -51.92 -0.35 0.93 16 28 H 0.12 1.41 7.67 -51.92 -0.40 1.01 16 29 H 0.11 1.15 8.09 -51.93 -0.42 0.73 16 30 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.10 0.86 8.03 -51.93 -0.42 0.44 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.12 1.08 6.38 -51.93 -0.33 0.74 16 LS Contribution 336.91 15.07 5.08 5.08 Total: -1.00 -35.82 336.91 -7.71 -43.52 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.68 Total: -2.14 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 0.35 Total: -16.63 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.74 Total: -25.56 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -2.63 Total: -40.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 20.40 SS G_CDS: -0.54 Total: 19.85 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.82 -7.71 -43.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177446632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.342 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds