Wall clock time and date at job start Tue Mar 31 2020 08:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 O 1.42097 * 108.58117 * 2 1 4 4 O 1.42100 * 108.57931 * 228.97370 * 2 1 3 5 5 C 1.81403 * 101.92025 * 114.48579 * 2 1 3 6 6 C 1.53003 * 109.47344 * 174.49348 * 5 2 1 7 7 C 1.53000 * 115.54764 * 269.07377 * 6 5 2 8 8 C 1.50700 * 109.47234 * 294.84222 * 7 6 5 9 9 O 1.20828 * 119.99564 * 355.13074 * 8 7 6 10 10 O 1.34225 * 120.00070 * 175.14261 * 8 7 6 11 11 C 1.45201 * 116.99983 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47312 * 179.97438 * 11 10 8 13 13 C 1.50698 * 109.47234 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99928 * 0.02562 * 13 12 11 15 15 C 1.37883 * 120.00009 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99684 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99899 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47139 * 90.00272 * 17 15 13 19 19 H 1.48503 * 109.47032 * 210.00418 * 17 15 13 20 20 H 1.48502 * 109.47268 * 329.99971 * 17 15 13 21 21 C 1.52995 * 117.50223 * 123.36013 * 6 5 2 22 22 C 1.52999 * 60.00202 * 252.51571 * 21 6 5 23 23 H 1.09000 * 109.47428 * 65.51348 * 1 2 3 24 24 H 1.09004 * 109.47266 * 185.51300 * 1 2 3 25 25 H 1.08997 * 109.47605 * 305.51385 * 1 2 3 26 26 H 1.08995 * 109.47098 * 294.49453 * 5 2 1 27 27 H 1.08999 * 109.47264 * 54.49455 * 5 2 1 28 28 H 1.09007 * 109.47401 * 54.84562 * 7 6 5 29 29 H 1.08998 * 109.46655 * 174.84243 * 7 6 5 30 30 H 1.09003 * 109.46959 * 299.99870 * 11 10 8 31 31 H 1.09000 * 109.47266 * 59.99323 * 11 10 8 32 32 H 1.09003 * 109.46697 * 299.99903 * 12 11 10 33 33 H 1.09000 * 109.47093 * 59.99724 * 12 11 10 34 34 H 0.96999 * 119.99617 * 180.02562 * 16 15 13 35 35 H 1.09003 * 117.49752 * 0.02562 * 21 6 5 36 36 H 1.08992 * 117.49845 * 145.02049 * 21 6 5 37 37 H 1.09005 * 117.49753 * 252.51230 * 22 21 6 38 38 H 1.08999 * 117.50055 * 107.48766 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.6989 -0.9455 1.7422 7 6 4.2177 -2.3062 1.2728 8 6 3.6662 -3.3889 2.1643 9 8 3.0055 -3.0959 3.1326 10 8 3.9091 -4.6786 1.8828 11 6 3.3460 -5.6676 2.7846 12 6 3.7256 -7.0699 2.3049 13 6 3.1418 -8.0963 3.2413 14 1 2.5579 -7.7800 4.0929 15 6 3.3521 -9.4392 3.0099 16 7 4.0626 -9.8243 1.9725 17 14 2.6277 -10.7114 4.1702 18 1 1.2731 -11.0966 3.6991 19 1 3.5022 -11.9114 4.1973 20 1 2.5321 -10.1377 5.5366 21 6 4.4057 -0.2912 2.9309 22 6 4.6020 0.2695 1.5209 23 1 -0.3634 0.4259 -0.9352 24 1 -0.3634 -1.0229 0.0987 25 1 -0.3634 0.5969 0.8364 26 1 1.8468 -0.0684 2.4065 27 1 1.6797 -1.6954 1.7043 28 1 3.8973 -2.4828 0.2459 29 1 5.3066 -2.3159 1.3204 30 1 3.7380 -5.5082 3.7891 31 1 2.2604 -5.5702 2.7986 32 1 3.3332 -7.2290 1.3005 33 1 4.8112 -7.1676 2.2906 34 1 4.2103 -10.7691 1.8096 35 1 3.7947 0.2885 3.6228 36 1 5.2404 -0.8301 3.3789 37 1 5.5659 0.0995 1.0414 38 1 4.1202 1.2184 1.2850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177446632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:11 Heat of formation + Delta-G solvation = -166.265936 kcal Electronic energy + Delta-G solvation = -21162.675563 eV Core-core repulsion = 17711.513444 eV Total energy + Delta-G solvation = -3451.162119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.57192 -39.30207 -37.96130 -37.42414 -36.95713 -35.44808 -32.50039 -31.09298 -30.59658 -29.51811 -26.98871 -23.56096 -23.32831 -22.36196 -20.50256 -19.70774 -18.96920 -18.12182 -17.73574 -17.51682 -17.41101 -16.99012 -16.70752 -16.38286 -16.02199 -15.62021 -14.94629 -14.39032 -14.31027 -14.03283 -13.96303 -13.79258 -13.53222 -13.17205 -13.01679 -13.00532 -12.96221 -12.79929 -12.56437 -12.55003 -12.36758 -12.23427 -11.86341 -11.80545 -11.60779 -11.46255 -11.45163 -11.16579 -10.61932 -10.55718 -8.27400 -6.40993 -0.92391 1.21353 1.40702 1.42825 1.53741 1.72206 1.86381 2.39200 2.67632 2.77121 3.07020 3.09443 3.42948 3.49315 3.62817 3.82256 4.03402 4.08700 4.15255 4.22442 4.26634 4.37719 4.47065 4.60784 4.67592 4.71830 4.79293 4.94428 5.02044 5.04120 5.21190 5.28153 5.45946 5.57667 5.75231 6.05756 6.71937 6.78930 7.29021 8.85284 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.027784 B = 0.003120 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.518699 B = 8972.204818 C = 9346.496935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.423 3.577 3 O -0.968 6.968 4 O -0.978 6.978 5 C -0.567 4.567 6 C -0.132 4.132 7 C -0.087 4.087 8 C 0.454 3.546 9 O -0.526 6.526 10 O -0.371 6.371 11 C 0.091 3.909 12 C 0.028 3.972 13 C -0.550 4.550 14 H 0.066 0.934 15 C 0.005 3.995 16 N -0.927 5.927 17 Si 0.974 3.026 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.262 1.262 21 C -0.144 4.144 22 C -0.177 4.177 23 H 0.140 0.860 24 H 0.142 0.858 25 H 0.155 0.845 26 H 0.162 0.838 27 H 0.134 0.866 28 H 0.124 0.876 29 H 0.134 0.866 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.005 0.995 33 H 0.005 0.995 34 H 0.268 0.732 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 23.211 -1.505 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.610 3.390 3 O -0.965 6.965 4 O -0.975 6.975 5 C -0.696 4.696 6 C -0.133 4.133 7 C -0.124 4.124 8 C 0.298 3.702 9 O -0.415 6.415 10 O -0.288 6.288 11 C 0.018 3.982 12 C -0.009 4.009 13 C -0.588 4.588 14 H 0.084 0.916 15 C -0.194 4.194 16 N -0.566 5.566 17 Si 0.798 3.202 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.186 1.186 21 C -0.182 4.182 22 C -0.214 4.214 23 H 0.159 0.841 24 H 0.161 0.839 25 H 0.173 0.827 26 H 0.180 0.820 27 H 0.152 0.848 28 H 0.142 0.858 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.077 0.923 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.616 23.410 -1.973 23.942 hybrid contribution -0.800 -1.407 1.046 1.927 sum -5.416 22.003 -0.927 22.679 Atomic orbital electron populations 1.30179 1.22831 1.13432 1.13573 1.07612 0.79585 0.74660 0.77140 1.93526 1.80510 1.35579 1.86860 1.93549 1.80742 1.67524 1.55727 1.29914 1.01549 1.14837 1.23272 1.20572 0.90954 0.93031 1.08748 1.21188 1.04071 0.87623 0.99554 1.24254 0.77572 0.83504 0.84878 1.90591 1.38000 1.83647 1.29274 1.86535 1.70622 1.17044 1.54569 1.23128 0.97360 0.86302 0.91408 1.18997 0.96461 0.88876 0.96567 1.21376 1.34152 0.91698 1.11572 0.91590 1.25986 0.95239 1.00943 0.97211 1.70100 1.40035 1.16980 1.29522 0.85309 0.78310 0.77631 0.78956 1.19491 1.20476 1.18644 1.23146 1.02313 1.01802 0.90906 1.23734 1.01499 0.96001 1.00164 0.84143 0.83928 0.82699 0.81958 0.84780 0.85824 0.84784 0.92199 0.92002 0.97644 0.97690 0.92341 0.86965 0.88233 0.86155 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.08 10.62 113.37 1.20 -3.88 16 2 S 2.42 38.10 5.06 -56.49 -0.29 37.81 16 3 O -0.97 -19.73 16.18 -127.37 -2.06 -21.79 16 4 O -0.98 -23.80 17.61 -127.37 -2.24 -26.04 16 5 C -0.57 -9.00 5.47 71.98 0.39 -8.60 16 6 C -0.13 -2.60 1.09 -52.18 -0.06 -2.66 16 7 C -0.09 -2.06 5.69 29.85 0.17 -1.89 16 8 C 0.45 14.81 7.52 71.24 0.54 15.34 16 9 O -0.53 -18.45 14.64 21.96 0.32 -18.12 16 10 O -0.37 -14.77 10.22 -51.37 -0.53 -15.29 16 11 C 0.09 4.06 5.40 71.98 0.39 4.45 16 12 C 0.03 1.52 5.35 29.85 0.16 1.68 16 13 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 14 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 15 C 0.01 0.29 5.46 84.66 0.46 0.76 16 16 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 17 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 21 C -0.14 -2.50 9.81 30.59 0.30 -2.20 16 22 C -0.18 -2.89 9.33 30.59 0.29 -2.61 16 23 H 0.14 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.16 1.62 7.87 -2.39 -0.02 1.60 16 27 H 0.13 2.30 6.83 -2.39 -0.02 2.28 16 28 H 0.12 2.86 7.67 -2.38 -0.02 2.85 16 29 H 0.13 2.56 8.09 -2.39 -0.02 2.54 16 30 H 0.06 2.62 8.13 -2.39 -0.02 2.60 16 31 H 0.06 2.67 8.13 -2.39 -0.02 2.65 16 32 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.11 1.67 8.03 -2.39 -0.02 1.65 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.12 2.00 6.38 -2.39 -0.02 1.98 16 Total: -1.00 -77.33 336.91 2.64 -74.69 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 1.05 Total: 9.23 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 4.08 Total: -30.49 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.28 Total: -55.37 kcal Atomic # 8 Polarization: -76.74 SS G_CDS: -4.51 Total: -81.25 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 38.10 SS G_CDS: -0.29 Total: 37.81 kcal Total: -77.33 2.64 -74.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177446632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.578 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds