Wall clock time and date at job start Tue Mar 31 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99646 * 2 1 4 4 H 1.48504 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47223 * 300.00092 * 3 2 1 6 6 H 1.48504 * 109.46976 * 60.00392 * 3 2 1 7 7 C 1.37875 * 120.00502 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46968 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46799 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46850 * 179.97438 * 11 10 9 13 13 C 1.38439 * 119.99694 * 179.97438 * 12 11 10 14 14 N 1.30227 * 125.58653 * 359.97438 * 13 12 11 15 15 N 1.26255 * 117.65453 * 180.02562 * 14 13 12 16 16 C 1.30422 * 116.37426 * 359.97438 * 15 14 13 17 17 C 1.47736 * 126.14429 * 179.97438 * 16 15 14 18 18 C 1.39595 * 119.75272 * 0.02562 * 17 16 15 19 19 C 1.38306 * 119.04901 * 179.76707 * 18 17 16 20 20 C 1.38855 * 118.53715 * 0.49921 * 19 18 17 21 21 C 1.38253 * 119.40872 * 359.49759 * 20 19 18 22 22 N 1.31742 * 120.92472 * 0.25551 * 21 20 19 23 23 S 1.71283 * 125.58335 * 180.31038 * 13 12 11 24 24 H 0.96992 * 120.00216 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47578 * 59.99472 * 9 7 2 26 26 H 1.09005 * 109.46670 * 300.00255 * 9 7 2 27 27 H 1.08999 * 109.47227 * 59.99864 * 10 9 7 28 28 H 1.09000 * 109.46705 * 299.99464 * 10 9 7 29 29 H 1.08999 * 109.47284 * 59.99969 * 11 10 9 30 30 H 1.09000 * 109.47112 * 299.99286 * 11 10 9 31 31 H 0.96993 * 120.00330 * 0.02562 * 12 11 10 32 32 H 1.07994 * 120.47519 * 0.04217 * 18 17 16 33 33 H 1.08000 * 120.73493 * 180.24812 * 19 18 17 34 34 H 1.08002 * 120.29821 * 179.78252 * 20 19 18 35 35 H 1.08005 * 119.53659 * 180.23539 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 0.0001 12 7 2.4327 -6.1005 -0.0005 13 6 1.9712 -7.4057 0.0005 14 7 0.7201 -7.7672 0.0024 15 7 0.4676 -9.0043 0.0035 16 6 1.4966 -9.8057 0.0021 17 6 1.4510 -11.2823 0.0035 18 6 0.2183 -11.9373 0.0061 19 6 0.1926 -13.3202 0.0025 20 6 1.3999 -14.0061 0.0071 21 6 2.5851 -13.2943 0.0044 22 7 2.5836 -11.9768 0.0027 23 16 2.9524 -8.8097 0.0075 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6248 -2.5570 0.8897 27 1 2.8722 -3.6042 0.8894 28 1 2.8721 -3.6042 -0.8906 29 1 0.8536 -5.0451 -0.8896 30 1 0.8543 -5.0446 0.8904 31 1 3.3863 -5.9233 -0.0008 32 1 -0.7021 -11.3724 0.0064 33 1 -0.7458 -13.8548 0.0004 34 1 1.4130 -15.0860 0.0080 35 1 3.5253 -13.8257 0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185632404.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:34 Heat of formation + Delta-G solvation = 89.169212 kcal Electronic energy + Delta-G solvation = -18570.247173 eV Core-core repulsion = 15502.055974 eV Total energy + Delta-G solvation = -3068.191198 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.04195 -40.20030 -36.90160 -33.88751 -33.01377 -32.58851 -31.51116 -29.27900 -27.20943 -25.68967 -23.94494 -23.66254 -22.89086 -20.77541 -19.98102 -19.17102 -17.67059 -16.75631 -16.42855 -16.29861 -15.95454 -15.72084 -14.76767 -14.76392 -14.48180 -14.12286 -14.02154 -13.44411 -13.20155 -12.41510 -12.37993 -12.21856 -11.89772 -11.14354 -10.84673 -10.84419 -10.68595 -10.58500 -10.29797 -10.10093 -9.99748 -9.86381 -9.85604 -9.55331 -9.17677 -9.15028 -8.42102 -7.92517 -6.06328 -4.09777 0.05925 0.65432 0.91282 1.23100 1.33738 2.71145 3.06043 3.27331 3.35070 3.38373 3.56050 3.57077 4.38880 4.41328 4.49574 4.69219 4.74535 4.81443 5.05072 5.29655 5.30452 5.45685 5.49724 5.63057 5.72068 5.84206 6.01674 6.27855 6.38933 6.46579 6.81954 6.86065 7.20265 7.52438 7.57415 7.68342 7.91662 8.31967 8.71186 8.96810 9.54835 11.04896 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.062452 B = 0.002270 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.238085 B =12330.583301 C =12753.069260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.123 3.877 12 N -0.667 5.667 13 C 0.273 3.727 14 N -0.343 5.343 15 N -0.186 5.186 16 C -0.012 4.012 17 C 0.212 3.788 18 C -0.131 4.131 19 C -0.072 4.072 20 C -0.171 4.171 21 C 0.107 3.893 22 N -0.478 5.478 23 S 0.130 5.870 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.417 0.583 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 -27.860 0.013 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.001 4.001 12 N -0.303 5.303 13 C -0.098 4.098 14 N -0.195 5.195 15 N -0.026 5.026 16 C -0.293 4.293 17 C 0.073 3.927 18 C -0.155 4.155 19 C -0.098 4.098 20 C -0.192 4.192 21 C -0.052 4.052 22 N -0.189 5.189 23 S 0.370 5.630 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.254 0.746 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.295 -26.907 0.020 27.424 hybrid contribution -0.034 0.612 -0.005 0.613 sum 5.261 -26.295 0.015 26.817 Atomic orbital electron populations 1.69968 1.06052 1.26676 1.50443 1.25034 0.94876 0.99363 0.95211 0.86516 0.80028 0.83687 0.77639 1.19756 1.20968 1.20963 1.21213 0.93034 0.90844 1.51076 0.92557 1.19029 0.93760 0.90653 0.97832 1.21934 0.99974 0.92944 1.01165 1.21933 0.91455 0.83991 1.02701 1.44445 1.10239 0.99696 1.75914 1.26150 0.93302 0.93429 0.96902 1.71481 1.13635 1.06826 1.27563 1.71538 1.26232 0.95625 1.09175 1.26632 0.90174 0.96965 1.15530 1.18155 0.89536 0.88135 0.96904 1.22100 0.98831 0.94979 0.99544 1.21592 0.98979 0.93759 0.95499 1.22254 0.93479 1.01696 1.01781 1.22677 0.98532 0.88853 0.95104 1.67586 1.29431 1.09321 1.12518 1.84811 1.09622 0.96094 1.72491 0.92911 0.96114 0.96125 0.92480 0.92473 0.91063 0.91059 0.74554 0.83482 0.84165 0.84425 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 11 C 0.12 2.05 5.98 -4.04 -0.02 2.02 16 12 N -0.67 -9.33 5.71 -62.13 -0.35 -9.68 16 13 C 0.27 4.07 8.21 -87.41 -0.72 3.35 16 14 N -0.34 -5.88 11.20 29.89 0.33 -5.55 16 15 N -0.19 -2.97 11.30 32.99 0.37 -2.60 16 16 C -0.01 -0.17 7.49 -14.27 -0.11 -0.27 16 17 C 0.21 2.56 6.75 -83.03 -0.56 2.00 16 18 C -0.13 -1.29 9.73 -39.05 -0.38 -1.67 16 19 C -0.07 -0.50 10.16 -39.33 -0.40 -0.90 16 20 C -0.17 -1.05 10.11 -39.35 -0.40 -1.45 16 21 C 0.11 0.83 11.17 -17.58 -0.20 0.63 16 22 N -0.48 -5.33 10.15 -9.86 -0.10 -5.43 16 23 S 0.13 1.63 23.12 -107.50 -2.49 -0.86 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.42 4.73 8.60 -40.82 -0.35 4.38 16 32 H 0.15 1.40 7.84 -52.49 -0.41 0.99 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 35 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -32.47 325.54 -9.19 -41.66 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -4.11 Total: -1.56 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -3.47 Total: -11.42 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: 0.99 Total: -49.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.49 Total: -0.86 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.47 -9.19 -41.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185632404.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.833 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds