Wall clock time and date at job start Tue Mar 31 2020 06:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99646 * 2 1 4 4 H 1.48504 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47223 * 300.00092 * 3 2 1 6 6 H 1.48504 * 109.46976 * 60.00392 * 3 2 1 7 7 C 1.37875 * 120.00502 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99834 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46968 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46799 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46850 * 179.97438 * 11 10 9 13 13 C 1.38439 * 119.99694 * 179.97438 * 12 11 10 14 14 N 1.30227 * 125.58653 * 359.97438 * 13 12 11 15 15 N 1.26255 * 117.65453 * 180.02562 * 14 13 12 16 16 C 1.30422 * 116.37426 * 359.97438 * 15 14 13 17 17 C 1.47736 * 126.14429 * 179.97438 * 16 15 14 18 18 C 1.39595 * 119.75272 * 0.02562 * 17 16 15 19 19 C 1.38306 * 119.04901 * 179.76707 * 18 17 16 20 20 C 1.38855 * 118.53715 * 0.49921 * 19 18 17 21 21 C 1.38253 * 119.40872 * 359.49759 * 20 19 18 22 22 N 1.31742 * 120.92472 * 0.25551 * 21 20 19 23 23 S 1.71283 * 125.58335 * 180.31038 * 13 12 11 24 24 H 0.96992 * 120.00216 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47578 * 59.99472 * 9 7 2 26 26 H 1.09005 * 109.46670 * 300.00255 * 9 7 2 27 27 H 1.08999 * 109.47227 * 59.99864 * 10 9 7 28 28 H 1.09000 * 109.46705 * 299.99464 * 10 9 7 29 29 H 1.08999 * 109.47284 * 59.99969 * 11 10 9 30 30 H 1.09000 * 109.47112 * 299.99286 * 11 10 9 31 31 H 0.96993 * 120.00330 * 0.02562 * 12 11 10 32 32 H 1.07994 * 120.47519 * 0.04217 * 18 17 16 33 33 H 1.08000 * 120.73493 * 180.24812 * 19 18 17 34 34 H 1.08002 * 120.29821 * 179.78252 * 20 19 18 35 35 H 1.08005 * 119.53659 * 180.23539 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 0.0001 12 7 2.4327 -6.1005 -0.0005 13 6 1.9712 -7.4057 0.0005 14 7 0.7201 -7.7672 0.0024 15 7 0.4676 -9.0043 0.0035 16 6 1.4966 -9.8057 0.0021 17 6 1.4510 -11.2823 0.0035 18 6 0.2183 -11.9373 0.0061 19 6 0.1926 -13.3202 0.0025 20 6 1.3999 -14.0061 0.0071 21 6 2.5851 -13.2943 0.0044 22 7 2.5836 -11.9768 0.0027 23 16 2.9524 -8.8097 0.0075 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8902 26 1 0.6248 -2.5570 0.8897 27 1 2.8722 -3.6042 0.8894 28 1 2.8721 -3.6042 -0.8906 29 1 0.8536 -5.0451 -0.8896 30 1 0.8543 -5.0446 0.8904 31 1 3.3863 -5.9233 -0.0008 32 1 -0.7021 -11.3724 0.0064 33 1 -0.7458 -13.8548 0.0004 34 1 1.4130 -15.0860 0.0080 35 1 3.5253 -13.8257 0.0041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185632404.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:33 Heat of formation + Delta-G solvation = 68.049231 kcal Electronic energy + Delta-G solvation = -18571.163004 eV Core-core repulsion = 15502.055974 eV Total energy + Delta-G solvation = -3069.107029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.13066 -40.90675 -38.18809 -35.68344 -33.95716 -33.48401 -32.99258 -30.39745 -28.77403 -26.91906 -25.26108 -24.44753 -23.99934 -22.42997 -21.02263 -20.32109 -18.68164 -18.43907 -17.55454 -17.13266 -17.06879 -16.54943 -16.47598 -16.14291 -15.75947 -14.97296 -14.92566 -14.35025 -14.25994 -13.99696 -13.96358 -13.75053 -12.88564 -12.79419 -12.59672 -12.37380 -12.30256 -11.74735 -11.58339 -11.53082 -11.24853 -11.13504 -11.03250 -10.82483 -10.57338 -10.55618 -10.00534 -9.02738 -8.20975 -6.32241 -0.84976 -0.41250 0.25901 0.28678 0.41170 1.40754 1.41030 1.54009 1.62535 1.96143 2.40796 2.71965 2.86918 3.13003 3.55709 3.87049 3.96396 4.05753 4.09091 4.14558 4.16122 4.32209 4.50197 4.59415 4.84771 4.89574 4.92413 5.12819 5.16103 5.25564 5.46006 5.54343 5.68286 5.71017 5.82661 6.17080 6.20811 6.84966 6.85271 7.37350 7.60421 8.91211 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.062452 B = 0.002270 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.238085 B =12330.583301 C =12753.069260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.103 4.103 11 C 0.142 3.858 12 N -0.661 5.661 13 C 0.255 3.745 14 N -0.380 5.380 15 N -0.219 5.219 16 C -0.006 4.006 17 C 0.172 3.828 18 C -0.140 4.140 19 C -0.070 4.070 20 C -0.150 4.150 21 C 0.098 3.902 22 N -0.501 5.501 23 S 0.185 5.815 24 H 0.263 0.737 25 H -0.006 1.006 26 H -0.006 1.006 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.430 0.570 32 H 0.140 0.860 33 H 0.172 0.828 34 H 0.179 0.821 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.068 -30.378 0.016 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.141 4.141 11 C 0.016 3.984 12 N -0.300 5.300 13 C -0.117 4.117 14 N -0.231 5.231 15 N -0.058 5.058 16 C -0.288 4.288 17 C 0.034 3.966 18 C -0.164 4.164 19 C -0.096 4.096 20 C -0.170 4.170 21 C -0.061 4.061 22 N -0.212 5.212 23 S 0.426 5.574 24 H 0.072 0.928 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.271 0.729 32 H 0.158 0.842 33 H 0.190 0.810 34 H 0.196 0.804 35 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 7.335 -29.441 0.022 30.341 hybrid contribution -0.655 1.067 -0.005 1.252 sum 6.680 -28.374 0.017 29.150 Atomic orbital electron populations 1.70110 1.07878 1.27742 1.51688 1.26019 0.95767 1.03542 0.94844 0.85372 0.79184 0.78702 0.77612 1.18255 1.20604 1.20594 1.21698 0.93747 0.91988 1.50373 0.91560 1.18928 0.94374 0.92702 0.95304 1.21620 0.98615 0.91549 1.02344 1.21441 0.91330 0.84130 1.01458 1.44059 1.10326 0.98863 1.76780 1.26207 0.93661 0.94210 0.97593 1.71410 1.15317 1.07834 1.28586 1.71497 1.27190 0.95503 1.11604 1.27250 0.90516 0.98368 1.12658 1.18182 0.90864 0.87242 1.00302 1.22204 0.97836 0.96534 0.99782 1.22011 1.00970 0.92492 0.94127 1.22737 0.92280 1.03639 0.98363 1.23330 1.00708 0.87876 0.94203 1.67525 1.29244 1.11122 1.13313 1.84520 1.07764 0.93723 1.71373 0.92800 0.98722 0.98733 0.91203 0.91194 0.92451 0.92447 0.72930 0.84238 0.81007 0.80364 0.79138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.54 -29.94 9.11 25.60 0.23 -29.71 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -3.88 5.27 30.60 0.16 -3.72 16 11 C 0.14 4.86 5.98 86.38 0.52 5.38 16 12 N -0.66 -18.54 5.71 -350.49 -2.00 -20.54 16 13 C 0.25 7.71 8.21 179.22 1.47 9.18 16 14 N -0.38 -13.61 11.20 -59.35 -0.66 -14.28 16 15 N -0.22 -7.33 11.30 -49.55 -0.56 -7.89 16 16 C -0.01 -0.17 7.49 87.42 0.65 0.49 16 17 C 0.17 4.08 6.75 41.83 0.28 4.36 16 18 C -0.14 -2.64 9.73 22.61 0.22 -2.42 16 19 C -0.07 -0.77 10.16 22.43 0.23 -0.54 16 20 C -0.15 -1.21 10.11 22.42 0.23 -0.99 16 21 C 0.10 1.20 11.17 84.71 0.95 2.15 16 22 N -0.50 -10.40 10.15 -185.10 -1.88 -12.28 16 23 S 0.19 4.57 23.12 -56.49 -1.31 3.27 16 24 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 25 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 26 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 27 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.43 9.36 8.60 -92.71 -0.80 8.56 16 32 H 0.14 2.74 7.84 -2.91 -0.02 2.72 16 33 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 35 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 Total: -1.00 -73.13 325.54 1.77 -71.36 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.32 Total: 5.30 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 5.55 Total: -14.16 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -4.82 Total: -111.60 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 4.57 SS G_CDS: -1.31 Total: 3.27 kcal Total: -73.13 1.77 -71.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185632404.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.409 kcal (2) G-P(sol) polarization free energy of solvation -73.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds