Wall clock time and date at job start Tue Mar 31 2020 06:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99785 * 2 1 4 4 H 1.48498 * 109.47318 * 269.99685 * 3 2 1 5 5 H 1.48496 * 109.47252 * 30.00029 * 3 2 1 6 6 H 1.48503 * 109.46837 * 149.99976 * 3 2 1 7 7 C 1.37881 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99888 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99532 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46814 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47198 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47017 * 180.02562 * 11 10 9 13 13 C 1.39254 * 119.99873 * 180.02562 * 12 11 10 14 14 C 1.39093 * 119.64394 * 359.97438 * 13 12 11 15 15 C 1.38305 * 119.14899 * 180.02562 * 14 13 12 16 16 C 1.39257 * 118.46253 * 0.02562 * 15 14 13 17 17 O 1.36014 * 120.38938 * 180.02562 * 16 15 14 18 18 C 1.42902 * 117.00180 * 180.02562 * 17 16 15 19 19 F 1.39903 * 109.47323 * 59.99239 * 18 17 16 20 20 F 1.39897 * 109.47396 * 179.97438 * 18 17 16 21 21 F 1.39904 * 109.46988 * 299.99848 * 18 17 16 22 22 C 1.38468 * 119.22250 * 359.97438 * 16 15 14 23 23 N 1.32000 * 120.77962 * 359.97438 * 22 16 15 24 24 H 0.97001 * 119.99718 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47312 * 60.00078 * 9 7 2 26 26 H 1.08996 * 109.47593 * 299.99655 * 9 7 2 27 27 H 1.08997 * 109.46867 * 60.00112 * 10 9 7 28 28 H 1.08996 * 109.47010 * 300.00319 * 10 9 7 29 29 H 1.09003 * 109.47174 * 59.99762 * 11 10 9 30 30 H 1.09007 * 109.46694 * 300.00338 * 11 10 9 31 31 H 0.96992 * 119.99816 * 359.97438 * 12 11 10 32 32 H 1.07995 * 120.42881 * 0.27606 * 14 13 12 33 33 H 1.08005 * 120.76713 * 180.02562 * 15 14 13 34 34 H 1.07999 * 119.61107 * 179.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6366 0.0012 12 7 6.0398 -4.0178 0.0004 13 6 7.4089 -4.2723 0.0019 14 6 8.3062 -3.2095 0.0035 15 6 9.6638 -3.4739 0.0043 16 6 10.0811 -4.8025 0.0030 17 8 11.4066 -5.1073 0.0044 18 6 11.7536 -6.4936 0.0023 19 9 11.2285 -7.1041 -1.1417 20 9 13.1463 -6.6258 0.0035 21 9 11.2254 -7.1081 1.1428 22 6 9.1308 -5.8096 0.0015 23 7 7.8424 -5.5225 0.0017 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6808 0.8905 26 1 3.8752 -0.6796 -0.8894 27 1 3.6586 -3.1502 -0.8903 28 1 3.6578 -3.1506 0.8896 29 1 5.9142 -2.1230 0.8916 30 1 5.9155 -2.1223 -0.8884 31 1 5.4095 -4.7550 -0.0003 32 1 7.9475 -2.1908 0.0081 33 1 10.3835 -2.6687 0.0060 34 1 9.4474 -6.8421 0.0000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186007116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:21 Heat of formation + Delta-G solvation = -163.358948 kcal Electronic energy + Delta-G solvation = -22024.583492 eV Core-core repulsion = 17928.539489 eV Total energy + Delta-G solvation = -4096.044003 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.75086 -48.48032 -48.34309 -40.88304 -38.83707 -36.31720 -33.64793 -32.66458 -31.75044 -29.37458 -27.09714 -26.09974 -24.19214 -23.26628 -22.14638 -20.48055 -20.01520 -19.45766 -19.42459 -17.66780 -17.18074 -16.80896 -16.19049 -15.67965 -15.27188 -15.20294 -15.00480 -14.81121 -14.74525 -14.69081 -14.48060 -14.19841 -14.09025 -13.62027 -13.54924 -13.45047 -12.88595 -12.70926 -12.29899 -12.01769 -11.17628 -11.02515 -10.26304 -10.09969 -10.05711 -9.85776 -9.80033 -9.73786 -9.30545 -8.61919 -7.68975 -6.11845 -4.11222 0.89413 1.08444 1.20808 2.53413 3.09861 3.24847 3.32954 3.34375 3.46539 3.49528 3.73276 4.23566 4.36318 4.37657 4.59229 4.91065 5.12021 5.21442 5.32167 5.42160 5.44350 5.63324 5.78781 5.96713 6.23508 6.30712 6.42951 6.66352 6.88962 7.12423 7.25961 7.49275 7.69194 7.94447 8.44317 8.92301 9.49527 11.01441 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.050150 B = 0.002450 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.187586 B =11426.418801 C =11794.209192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.113 4.113 11 C 0.118 3.882 12 N -0.713 5.713 13 C 0.398 3.602 14 C -0.206 4.206 15 C -0.028 4.028 16 C -0.031 4.031 17 O -0.306 6.306 18 C 0.601 3.399 19 F -0.167 7.167 20 F -0.134 7.134 21 F -0.167 7.167 22 C 0.099 3.901 23 N -0.515 5.515 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.407 0.593 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.095 -10.863 0.032 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.151 4.151 11 C -0.005 4.005 12 N -0.344 5.344 13 C 0.160 3.840 14 C -0.232 4.232 15 C -0.054 4.054 16 C -0.078 4.078 17 O -0.225 6.225 18 C 0.510 3.490 19 F -0.149 7.149 20 F -0.115 7.115 21 F -0.149 7.149 22 C -0.060 4.060 23 N -0.234 5.234 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.243 0.757 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 24.410 -11.094 0.036 26.812 hybrid contribution 0.786 0.908 -0.019 1.201 sum 25.196 -10.186 0.016 27.177 Atomic orbital electron populations 1.69913 1.06340 1.27011 1.50745 1.25045 0.94762 0.99252 0.94460 0.86760 0.80323 0.83548 0.78531 1.20245 1.21347 1.18970 1.21081 0.89264 0.94573 1.51288 0.90979 1.19498 0.97444 0.91235 0.96570 1.21691 0.90120 1.01146 1.02180 1.21798 0.97118 0.80455 1.01138 1.44917 1.01854 1.09325 1.78317 1.18541 0.86487 0.88585 0.90360 1.21396 0.91637 1.00358 1.09761 1.20615 0.95686 0.93202 0.95947 1.19340 0.80008 0.95876 1.12567 1.86378 1.25268 1.20711 1.90186 1.19411 0.75681 0.79135 0.74728 1.93306 1.86453 1.83698 1.51428 1.93298 1.26950 1.94953 1.96323 1.93307 1.86331 1.83531 1.51708 1.22770 0.87687 0.98479 0.97075 1.67146 1.15969 1.20428 1.19809 0.92632 0.96321 0.96743 0.91869 0.91853 0.91890 0.91896 0.75657 0.83352 0.83463 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.96 55.43 0.77 -26.43 16 2 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 7 C -0.52 -14.32 9.66 -34.44 -0.33 -14.65 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 10 C -0.11 -1.97 5.27 -26.73 -0.14 -2.11 16 11 C 0.12 1.63 4.89 -4.04 -0.02 1.61 16 12 N -0.71 -9.39 5.74 -60.38 -0.35 -9.74 16 13 C 0.40 5.24 7.65 -154.85 -1.18 4.05 16 14 C -0.21 -2.31 9.33 -39.24 -0.37 -2.67 16 15 C -0.03 -0.29 10.12 -39.18 -0.40 -0.68 16 16 C -0.03 -0.34 6.50 -39.12 -0.25 -0.60 16 17 O -0.31 -3.11 10.39 -19.79 -0.21 -3.32 16 18 C 0.60 5.37 3.42 101.05 0.35 5.72 16 19 F -0.17 -1.51 15.58 2.25 0.04 -1.47 16 20 F -0.13 -1.12 17.53 2.25 0.04 -1.08 16 21 F -0.17 -1.51 15.58 2.25 0.04 -1.47 16 22 C 0.10 1.18 9.44 -17.39 -0.16 1.02 16 23 N -0.52 -7.03 10.39 -12.28 -0.13 -7.16 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 26 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.06 0.83 7.92 -51.93 -0.41 0.42 16 30 H 0.06 0.82 7.93 -51.93 -0.41 0.41 16 31 H 0.41 5.23 8.60 -40.82 -0.35 4.88 16 32 H 0.15 1.44 6.70 -52.49 -0.35 1.09 16 33 H 0.15 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.16 1.63 5.10 -52.49 -0.27 1.36 16 LS Contribution 304.85 15.07 4.59 4.59 Total: -1.00 -29.76 304.85 -6.01 -35.77 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -3.41 Total: 0.97 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.72 Total: -6.86 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.30 Total: -43.33 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -0.21 Total: -3.32 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.11 Total: -4.03 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.76 -6.01 -35.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186007116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.586 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds