Wall clock time and date at job start Tue Mar 31 2020 06:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99785 * 2 1 4 4 H 1.48498 * 109.47318 * 269.99685 * 3 2 1 5 5 H 1.48496 * 109.47252 * 30.00029 * 3 2 1 6 6 H 1.48503 * 109.46837 * 149.99976 * 3 2 1 7 7 C 1.37881 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99888 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99532 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.46814 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47198 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47017 * 180.02562 * 11 10 9 13 13 C 1.39254 * 119.99873 * 180.02562 * 12 11 10 14 14 C 1.39093 * 119.64394 * 359.97438 * 13 12 11 15 15 C 1.38305 * 119.14899 * 180.02562 * 14 13 12 16 16 C 1.39257 * 118.46253 * 0.02562 * 15 14 13 17 17 O 1.36014 * 120.38938 * 180.02562 * 16 15 14 18 18 C 1.42902 * 117.00180 * 180.02562 * 17 16 15 19 19 F 1.39903 * 109.47323 * 59.99239 * 18 17 16 20 20 F 1.39897 * 109.47396 * 179.97438 * 18 17 16 21 21 F 1.39904 * 109.46988 * 299.99848 * 18 17 16 22 22 C 1.38468 * 119.22250 * 359.97438 * 16 15 14 23 23 N 1.32000 * 120.77962 * 359.97438 * 22 16 15 24 24 H 0.97001 * 119.99718 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47312 * 60.00078 * 9 7 2 26 26 H 1.08996 * 109.47593 * 299.99655 * 9 7 2 27 27 H 1.08997 * 109.46867 * 60.00112 * 10 9 7 28 28 H 1.08996 * 109.47010 * 300.00319 * 10 9 7 29 29 H 1.09003 * 109.47174 * 59.99762 * 11 10 9 30 30 H 1.09007 * 109.46694 * 300.00338 * 11 10 9 31 31 H 0.96992 * 119.99816 * 359.97438 * 12 11 10 32 32 H 1.07995 * 120.42881 * 0.27606 * 14 13 12 33 33 H 1.08005 * 120.76713 * 180.02562 * 15 14 13 34 34 H 1.07999 * 119.61107 * 179.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6366 0.0012 12 7 6.0398 -4.0178 0.0004 13 6 7.4089 -4.2723 0.0019 14 6 8.3062 -3.2095 0.0035 15 6 9.6638 -3.4739 0.0043 16 6 10.0811 -4.8025 0.0030 17 8 11.4066 -5.1073 0.0044 18 6 11.7536 -6.4936 0.0023 19 9 11.2285 -7.1041 -1.1417 20 9 13.1463 -6.6258 0.0035 21 9 11.2254 -7.1081 1.1428 22 6 9.1308 -5.8096 0.0015 23 7 7.8424 -5.5225 0.0017 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6808 0.8905 26 1 3.8752 -0.6796 -0.8894 27 1 3.6586 -3.1502 -0.8903 28 1 3.6578 -3.1506 0.8896 29 1 5.9142 -2.1230 0.8916 30 1 5.9155 -2.1223 -0.8884 31 1 5.4095 -4.7550 -0.0003 32 1 7.9475 -2.1908 0.0081 33 1 10.3835 -2.6687 0.0060 34 1 9.4474 -6.8421 0.0000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186007116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:20 Heat of formation + Delta-G solvation = -182.440107 kcal Electronic energy + Delta-G solvation = -22025.410913 eV Core-core repulsion = 17928.539489 eV Total energy + Delta-G solvation = -4096.871425 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.46191 -49.17615 -49.06305 -41.73908 -39.68528 -37.46249 -35.35105 -33.57674 -33.40785 -30.51711 -28.43173 -27.04095 -25.13500 -24.52999 -23.19569 -22.01391 -20.83346 -20.18335 -20.17501 -18.92263 -18.59283 -17.93628 -17.08973 -16.57879 -16.34497 -16.23397 -16.01910 -15.74453 -15.61493 -15.47523 -15.44618 -15.21822 -14.96842 -14.73146 -14.66697 -14.37992 -14.23210 -13.73390 -13.68040 -13.62327 -12.72542 -12.64640 -11.84498 -11.69747 -11.61884 -11.31024 -10.93029 -10.89630 -10.73894 -10.65822 -8.61807 -8.26965 -6.32015 0.03523 0.23618 0.46007 1.40672 1.42755 1.54251 1.79573 2.12527 2.39509 2.64489 2.74820 2.97993 3.09115 3.39951 3.52714 3.79929 4.01475 4.13428 4.24338 4.31665 4.53979 4.63955 4.81191 4.92227 4.93563 5.04635 5.15531 5.47219 5.55349 5.59785 5.67828 5.92636 6.29954 6.52282 6.77296 7.01462 7.32862 8.89945 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.050150 B = 0.002450 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.187586 B =11426.418801 C =11794.209192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.002 4.002 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.236 1.236 7 C -0.535 4.535 8 H 0.028 0.972 9 C -0.009 4.009 10 C -0.105 4.105 11 C 0.133 3.867 12 N -0.719 5.719 13 C 0.380 3.620 14 C -0.204 4.204 15 C -0.023 4.023 16 C -0.030 4.030 17 O -0.307 6.307 18 C 0.605 3.395 19 F -0.167 7.167 20 F -0.129 7.129 21 F -0.167 7.167 22 C 0.086 3.914 23 N -0.540 5.540 24 H 0.265 0.735 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.405 0.595 32 H 0.167 0.833 33 H 0.178 0.822 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.106 -9.522 0.039 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.198 4.198 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.159 1.159 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.143 4.143 11 C 0.010 3.990 12 N -0.350 5.350 13 C 0.143 3.857 14 C -0.229 4.229 15 C -0.049 4.049 16 C -0.078 4.078 17 O -0.226 6.226 18 C 0.514 3.486 19 F -0.149 7.149 20 F -0.110 7.110 21 F -0.149 7.149 22 C -0.072 4.072 23 N -0.259 5.259 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.241 0.759 32 H 0.185 0.815 33 H 0.196 0.804 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 27.467 -9.786 0.043 29.158 hybrid contribution -0.151 0.358 -0.023 0.390 sum 27.316 -9.428 0.019 28.897 Atomic orbital electron populations 1.70091 1.08587 1.28181 1.52777 1.26124 0.95649 1.03936 0.94115 0.85589 0.79754 0.77639 0.79239 1.19160 1.21608 1.15893 1.21523 0.92461 0.92958 1.50362 0.95359 1.19448 0.93549 0.94270 0.97386 1.21468 0.93104 0.98231 1.01462 1.21543 0.93974 0.81093 1.02436 1.44781 1.02159 1.08909 1.79188 1.18740 0.86500 0.89131 0.91321 1.21628 0.91745 1.00629 1.08937 1.20979 0.95909 0.93568 0.94426 1.19475 0.80168 0.96272 1.11839 1.86374 1.24749 1.21358 1.90105 1.19333 0.75808 0.78774 0.74640 1.93308 1.86501 1.83649 1.51465 1.93312 1.26539 1.94880 1.96296 1.93308 1.86379 1.83482 1.51745 1.22921 0.87483 0.99252 0.97567 1.67074 1.16907 1.21187 1.20696 0.92604 0.95277 0.95402 0.92713 0.92729 0.90586 0.90532 0.75932 0.81513 0.80431 0.81912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.32 13.96 21.45 0.30 -59.02 16 2 C 0.00 -0.11 5.47 84.66 0.46 0.35 16 3 Si 0.95 42.12 27.47 68.60 1.88 44.00 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.24 -9.23 6.54 99.48 0.65 -8.58 16 7 C -0.53 -29.70 9.66 25.60 0.25 -29.46 16 8 H 0.03 1.75 7.99 -2.91 -0.02 1.73 16 9 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 10 C -0.10 -3.53 5.27 30.60 0.16 -3.37 16 11 C 0.13 3.32 4.89 86.38 0.42 3.74 16 12 N -0.72 -17.85 5.74 -344.93 -1.98 -19.83 16 13 C 0.38 9.32 7.65 132.99 1.02 10.34 16 14 C -0.20 -3.95 9.33 22.49 0.21 -3.74 16 15 C -0.02 -0.39 10.12 22.53 0.23 -0.16 16 16 C -0.03 -0.61 6.50 22.57 0.15 -0.46 16 17 O -0.31 -5.55 10.39 -93.71 -0.97 -6.52 16 18 C 0.61 9.84 3.42 113.37 0.39 10.23 16 19 F -0.17 -2.80 15.58 44.97 0.70 -2.10 16 20 F -0.13 -1.94 17.53 44.97 0.79 -1.15 16 21 F -0.17 -2.80 15.58 44.97 0.70 -2.10 16 22 C 0.09 1.95 9.44 84.72 0.80 2.75 16 23 N -0.54 -14.19 10.39 -192.78 -2.00 -16.20 16 24 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 25 H 0.03 1.17 7.20 -2.39 -0.02 1.15 16 26 H 0.03 1.10 7.57 -2.39 -0.02 1.09 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 1.72 7.92 -2.39 -0.02 1.71 16 30 H 0.08 1.73 7.93 -2.38 -0.02 1.71 16 31 H 0.41 10.21 8.60 -92.71 -0.80 9.41 16 32 H 0.17 2.55 6.70 -2.91 -0.02 2.53 16 33 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.16 3.26 5.10 -2.91 -0.01 3.25 16 Total: -1.00 -65.34 304.85 3.93 -61.41 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.30 Total: 11.54 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 4.21 Total: -10.02 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -3.68 Total: -95.05 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.97 Total: -6.52 kcal Atomic # 9 Polarization: -7.55 SS G_CDS: 2.19 Total: -5.36 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.88 Total: 44.00 kcal Total: -65.34 3.93 -61.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186007116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.030 kcal (2) G-P(sol) polarization free energy of solvation -65.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds