Wall clock time and date at job start Tue Mar 31 2020 07:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47243 * 2 1 4 4 C 1.53002 * 109.47075 * 119.99746 * 2 1 3 5 5 C 1.50698 * 109.47049 * 184.99906 * 4 2 1 6 6 H 1.07999 * 120.00078 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99899 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00340 * 0.02562 * 7 5 4 9 9 Si 1.86811 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46712 * 59.99801 * 9 7 5 11 11 H 1.48499 * 109.47252 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46905 * 300.00103 * 9 7 5 13 13 S 1.81397 * 109.47151 * 239.99548 * 2 1 3 14 14 C 1.76205 * 102.99904 * 65.00277 * 13 2 1 15 15 N 1.31401 * 125.48902 * 0.02562 * 14 13 2 16 16 N 1.40422 * 106.93131 * 179.97438 * 15 14 13 17 17 H 0.97006 * 126.81209 * 180.02562 * 16 15 14 18 18 C 1.35166 * 106.37997 * 0.02562 * 16 15 14 19 19 C 1.48001 * 126.02768 * 180.02562 * 18 16 15 20 20 C 1.39445 * 119.73941 * 179.97438 * 19 18 16 21 21 C 1.38401 * 119.05698 * 179.97438 * 20 19 18 22 22 C 1.38776 * 118.51937 * 0.02562 * 21 20 19 23 23 C 1.38324 * 119.37922 * 0.25390 * 22 21 20 24 24 N 1.31694 * 120.91345 * 359.47351 * 23 22 21 25 25 N 1.31798 * 107.94919 * 0.25800 * 18 16 15 26 26 H 1.09001 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47012 * 299.99825 * 1 2 3 28 28 H 1.09001 * 109.47251 * 60.00149 * 1 2 3 29 29 H 1.08995 * 109.47327 * 304.99907 * 4 2 1 30 30 H 1.09001 * 109.47387 * 65.00348 * 4 2 1 31 31 H 0.96998 * 120.00402 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.46913 * 359.97438 * 20 19 18 33 33 H 1.08001 * 120.74292 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.30691 * 179.97438 * 22 21 20 35 35 H 1.08007 * 119.54038 * 179.74687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1925 2.3584 8 7 3.5764 -1.8368 3.3001 9 14 6.0921 -1.0602 2.4375 10 1 6.4844 0.3708 2.4966 11 1 6.5871 -1.7602 3.6499 12 1 6.6846 -1.6863 1.2283 13 16 2.1347 -0.8552 -1.4810 14 6 1.5828 0.1845 -2.7922 15 7 0.9009 1.2983 -2.6471 16 7 0.6695 1.8069 -3.9354 17 1 0.1916 2.6201 -4.1621 18 6 1.2446 0.9386 -4.7970 19 6 1.2601 1.0575 -6.2721 20 6 1.8956 0.0809 -7.0381 21 6 1.9011 0.2059 -8.4165 22 6 1.2712 1.3042 -8.9847 23 6 0.6650 2.2384 -8.1644 24 7 0.6694 2.0936 -6.8554 25 7 1.7847 -0.0353 -4.0921 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7715 1.2057 31 1 4.0607 -2.2435 4.0355 32 1 2.3766 -0.7610 -6.5626 33 1 2.3848 -0.5348 -9.0361 34 1 1.2584 1.4306 -10.0573 35 1 0.1776 3.0963 -8.6036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188316801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:54 Heat of formation + Delta-G solvation = 110.174981 kcal Electronic energy + Delta-G solvation = -19225.395720 eV Core-core repulsion = 16158.115400 eV Total energy + Delta-G solvation = -3067.280320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 6.84 seconds Orbital eigenvalues (eV) -41.92702 -40.28559 -34.57116 -33.33018 -32.79661 -32.24974 -32.02174 -30.02227 -27.43288 -24.80483 -24.04478 -23.28403 -22.63377 -21.38649 -20.27588 -18.62584 -17.11833 -16.34897 -16.30256 -15.99892 -15.90262 -15.65544 -14.78318 -14.49560 -14.22406 -14.15885 -13.61213 -12.97716 -12.57260 -12.35632 -12.09135 -11.75897 -11.56233 -11.12883 -10.93496 -10.67143 -10.54311 -10.47524 -10.38027 -10.19075 -10.11289 -10.06222 -9.49404 -9.33296 -9.13661 -9.04963 -8.35891 -7.03415 -6.01275 -4.03456 0.24154 0.82601 1.76353 1.78273 2.52333 2.81697 3.15837 3.37791 3.41026 3.45336 3.50509 3.52028 4.32623 4.41637 4.47995 4.59804 4.62362 4.93173 5.08413 5.36158 5.38388 5.62352 5.71087 5.73639 5.84227 5.87001 6.11338 6.15448 6.29844 6.50402 6.63014 6.74549 7.03058 7.36067 7.52136 7.58895 7.95868 7.98262 8.31958 9.01283 9.60914 11.09757 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.003244 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.513440 B = 8630.086721 C = 9217.653972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 H 0.086 0.914 4 C 0.040 3.960 5 C -0.523 4.523 6 H 0.064 0.936 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.274 1.274 13 S 0.044 5.956 14 C 0.212 3.788 15 N -0.309 5.309 16 N -0.460 5.460 17 H 0.444 0.556 18 C 0.324 3.676 19 C 0.187 3.813 20 C -0.114 4.114 21 C -0.075 4.075 22 C -0.160 4.160 23 C 0.104 3.896 24 N -0.478 5.478 25 N -0.500 5.500 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.155 0.845 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 6.180 -23.781 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 H 0.104 0.896 4 C 0.001 3.999 5 C -0.562 4.562 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.199 1.199 13 S 0.272 5.728 14 C -0.176 4.176 15 N -0.144 5.144 16 N -0.179 5.179 17 H 0.290 0.710 18 C 0.045 3.955 19 C 0.049 3.951 20 C -0.136 4.136 21 C -0.101 4.101 22 C -0.180 4.180 23 C -0.055 4.055 24 N -0.188 5.188 25 N -0.232 5.232 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.458 5.686 -22.519 24.107 hybrid contribution 0.389 1.287 -0.738 1.534 sum -6.069 6.973 -23.257 25.027 Atomic orbital electron populations 1.22115 0.94516 1.02120 1.01792 1.23768 0.97284 1.02883 0.95731 0.89588 1.19058 0.96512 0.95731 0.88623 1.21233 0.91490 1.34936 1.08493 0.91820 1.24976 0.98527 0.95068 0.95512 1.69940 1.35772 1.35632 1.12013 0.86638 0.85604 0.78284 0.77468 1.20232 1.21363 1.19910 1.86262 1.67703 1.27382 0.91467 1.26863 0.97806 0.96250 0.96701 1.78547 1.24407 1.13566 0.97847 1.47927 1.43559 1.22452 1.03961 0.71001 1.21643 0.94801 0.88328 0.90725 1.18200 0.96752 0.92294 0.87876 1.22189 0.97807 0.99549 0.94037 1.21665 0.96434 0.97459 0.94519 1.22330 0.98513 0.95318 1.01870 1.22676 0.96388 0.98599 0.87816 1.67415 1.16670 1.21193 1.13548 1.70672 1.25726 1.24894 1.01883 0.92236 0.92031 0.92653 0.94203 0.95303 0.92834 0.82764 0.83788 0.84137 0.81932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.06 37.16 0.34 -2.35 16 2 C -0.07 -1.43 2.47 -26.73 -0.07 -1.49 16 3 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 4 C 0.04 1.00 4.45 -27.88 -0.12 0.87 16 5 C -0.52 -14.48 8.53 -34.44 -0.29 -14.77 16 6 H 0.06 1.75 7.60 -52.49 -0.40 1.35 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 9 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 S 0.04 0.92 20.90 -107.50 -2.25 -1.33 16 14 C 0.21 4.11 8.02 -91.12 -0.73 3.38 16 15 N -0.31 -5.63 10.67 30.10 0.32 -5.31 16 16 N -0.46 -6.86 7.45 32.24 0.24 -6.62 16 17 H 0.44 5.22 8.96 -182.35 -1.63 3.59 16 18 C 0.32 4.92 7.91 -155.48 -1.23 3.69 16 19 C 0.19 2.25 6.75 -83.01 -0.56 1.69 16 20 C -0.11 -1.13 9.73 -39.07 -0.38 -1.51 16 21 C -0.07 -0.50 10.16 -39.32 -0.40 -0.90 16 22 C -0.16 -0.91 10.11 -39.35 -0.40 -1.31 16 23 C 0.10 0.74 11.17 -17.58 -0.20 0.55 16 24 N -0.48 -5.01 10.29 -9.83 -0.10 -5.11 16 25 N -0.50 -8.95 10.84 -11.46 -0.12 -9.07 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.98 6.22 -51.93 -0.32 0.66 16 29 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.15 1.55 7.84 -52.49 -0.41 1.14 16 33 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 34 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 35 H 0.16 0.66 8.06 -52.48 -0.42 0.24 16 LS Contribution 321.94 15.07 4.85 4.85 Total: -1.00 -32.53 321.94 -10.77 -43.29 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.29 Total: -1.20 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -4.14 Total: -10.53 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 1.07 Total: -51.80 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.25 Total: -1.33 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.53 -10.77 -43.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188316801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.469 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.84 seconds