Wall clock time and date at job start Tue Mar 31 2020 07:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47243 * 2 1 4 4 C 1.53002 * 109.47075 * 119.99746 * 2 1 3 5 5 C 1.50698 * 109.47049 * 184.99906 * 4 2 1 6 6 H 1.07999 * 120.00078 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99899 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00340 * 0.02562 * 7 5 4 9 9 Si 1.86811 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46712 * 59.99801 * 9 7 5 11 11 H 1.48499 * 109.47252 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46905 * 300.00103 * 9 7 5 13 13 S 1.81397 * 109.47151 * 239.99548 * 2 1 3 14 14 C 1.76205 * 102.99904 * 65.00277 * 13 2 1 15 15 N 1.31401 * 125.48902 * 0.02562 * 14 13 2 16 16 N 1.40422 * 106.93131 * 179.97438 * 15 14 13 17 17 H 0.97006 * 126.81209 * 180.02562 * 16 15 14 18 18 C 1.35166 * 106.37997 * 0.02562 * 16 15 14 19 19 C 1.48001 * 126.02768 * 180.02562 * 18 16 15 20 20 C 1.39445 * 119.73941 * 179.97438 * 19 18 16 21 21 C 1.38401 * 119.05698 * 179.97438 * 20 19 18 22 22 C 1.38776 * 118.51937 * 0.02562 * 21 20 19 23 23 C 1.38324 * 119.37922 * 0.25390 * 22 21 20 24 24 N 1.31694 * 120.91345 * 359.47351 * 23 22 21 25 25 N 1.31798 * 107.94919 * 0.25800 * 18 16 15 26 26 H 1.09001 * 109.46807 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47012 * 299.99825 * 1 2 3 28 28 H 1.09001 * 109.47251 * 60.00149 * 1 2 3 29 29 H 1.08995 * 109.47327 * 304.99907 * 4 2 1 30 30 H 1.09001 * 109.47387 * 65.00348 * 4 2 1 31 31 H 0.96998 * 120.00402 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.46913 * 359.97438 * 20 19 18 33 33 H 1.08001 * 120.74292 * 180.02562 * 21 20 19 34 34 H 1.08002 * 120.30691 * 179.97438 * 22 21 20 35 35 H 1.08007 * 119.54038 * 179.74687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1925 2.3584 8 7 3.5764 -1.8368 3.3001 9 14 6.0921 -1.0602 2.4375 10 1 6.4844 0.3708 2.4966 11 1 6.5871 -1.7602 3.6499 12 1 6.6846 -1.6863 1.2283 13 16 2.1347 -0.8552 -1.4810 14 6 1.5828 0.1845 -2.7922 15 7 0.9009 1.2983 -2.6471 16 7 0.6695 1.8069 -3.9354 17 1 0.1916 2.6201 -4.1621 18 6 1.2446 0.9386 -4.7970 19 6 1.2601 1.0575 -6.2721 20 6 1.8956 0.0809 -7.0381 21 6 1.9011 0.2059 -8.4165 22 6 1.2712 1.3042 -8.9847 23 6 0.6650 2.2384 -8.1644 24 7 0.6694 2.0936 -6.8554 25 7 1.7847 -0.0353 -4.0921 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -0.2617 2.1370 30 1 1.7517 -1.7715 1.2057 31 1 4.0607 -2.2435 4.0355 32 1 2.3766 -0.7610 -6.5626 33 1 2.3848 -0.5348 -9.0361 34 1 1.2584 1.4306 -10.0573 35 1 0.1776 3.0963 -8.6036 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188316801.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:51 Heat of formation + Delta-G solvation = 90.279079 kcal Electronic energy + Delta-G solvation = -19226.258471 eV Core-core repulsion = 16158.115400 eV Total energy + Delta-G solvation = -3068.143071 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.18689 -40.96505 -36.47154 -34.27912 -34.04378 -33.69500 -33.24744 -31.06735 -29.36070 -25.68164 -25.27215 -24.81648 -23.82561 -22.63983 -21.85586 -19.71709 -18.49938 -17.90600 -17.51668 -17.04083 -16.88501 -16.69999 -16.56008 -16.20568 -15.08099 -14.97859 -14.77848 -14.28978 -14.13485 -13.73666 -13.41802 -13.29573 -13.00058 -12.83523 -12.64288 -12.48166 -12.37778 -11.90318 -11.56397 -11.50516 -11.41591 -11.20697 -10.94959 -10.93057 -10.70745 -10.51516 -9.93578 -8.64907 -8.18131 -6.26932 -0.56131 0.20849 0.25025 0.62686 1.19149 1.42799 1.45541 1.53074 1.58744 1.74062 2.43903 2.57810 2.80627 3.16938 3.49968 3.76320 4.01300 4.04872 4.05383 4.15659 4.18189 4.41427 4.50823 4.60408 4.80559 4.87459 4.89137 4.97289 5.10831 5.17453 5.20440 5.39681 5.50958 5.63259 5.78855 5.93133 6.18826 6.61769 6.77839 6.84388 7.41061 8.93231 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.003244 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.513440 B = 8630.086721 C = 9217.653972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.056 4.056 3 H 0.077 0.923 4 C 0.047 3.953 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.009 3.991 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.268 1.268 13 S 0.019 5.981 14 C 0.203 3.797 15 N -0.325 5.325 16 N -0.451 5.451 17 H 0.457 0.543 18 C 0.338 3.662 19 C 0.149 3.851 20 C -0.122 4.122 21 C -0.072 4.072 22 C -0.136 4.136 23 C 0.097 3.903 24 N -0.495 5.495 25 N -0.525 5.525 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.008 0.992 31 H 0.264 0.736 32 H 0.143 0.857 33 H 0.176 0.824 34 H 0.183 0.817 35 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 7.283 -27.232 28.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.186 4.186 3 H 0.095 0.905 4 C 0.009 3.991 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.193 1.193 13 S 0.246 5.754 14 C -0.187 4.187 15 N -0.160 5.160 16 N -0.171 5.171 17 H 0.306 0.694 18 C 0.059 3.941 19 C 0.012 3.988 20 C -0.145 4.145 21 C -0.098 4.098 22 C -0.156 4.156 23 C -0.062 4.062 24 N -0.206 5.206 25 N -0.257 5.257 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.161 0.839 33 H 0.194 0.806 34 H 0.201 0.799 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.322 6.814 -25.971 27.584 hybrid contribution 0.272 1.036 0.034 1.071 sum -6.050 7.849 -25.937 27.765 Atomic orbital electron populations 1.22024 0.92234 1.02635 1.02631 1.23490 0.99072 1.01544 0.94448 0.90456 1.18844 0.95545 0.94742 0.89993 1.21546 0.92833 1.34649 1.08392 0.92027 1.25807 1.03227 0.94750 0.95189 1.70052 1.37573 1.36576 1.12657 0.85632 0.80017 0.78599 0.77681 1.19424 1.20714 1.19341 1.86135 1.68863 1.28166 0.92197 1.26451 0.98832 0.96535 0.96834 1.78424 1.24517 1.13354 0.99750 1.47831 1.43477 1.22893 1.02945 0.69420 1.22234 0.92674 0.86910 0.92245 1.18087 1.00031 0.94460 0.86195 1.22256 0.97768 0.98851 0.95634 1.22069 0.96026 0.98510 0.93170 1.22837 0.95485 0.93467 1.03819 1.23376 0.96139 0.99931 0.86766 1.67359 1.16968 1.20821 1.15445 1.70614 1.27277 1.26467 1.01361 0.91891 0.90920 0.91937 0.95875 0.97324 0.92679 0.83874 0.80650 0.79932 0.78703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.06 71.98 0.65 -4.40 16 2 C -0.06 -2.45 2.47 30.60 0.08 -2.37 16 3 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 4 C 0.05 2.48 4.45 29.85 0.13 2.61 16 5 C -0.54 -30.37 8.53 25.60 0.22 -30.16 16 6 H 0.06 3.45 7.60 -2.91 -0.02 3.43 16 7 C 0.01 0.50 5.46 84.65 0.46 0.96 16 8 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 9 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 S 0.02 0.81 20.90 -56.49 -1.18 -0.37 16 14 C 0.20 8.04 8.02 180.52 1.45 9.49 16 15 N -0.33 -11.99 10.67 -58.68 -0.63 -12.61 16 16 N -0.45 -13.43 7.45 -51.90 -0.39 -13.82 16 17 H 0.46 10.54 8.96 -213.10 -1.91 8.63 16 18 C 0.34 10.29 7.91 136.88 1.08 11.37 16 19 C 0.15 3.45 6.75 41.88 0.28 3.74 16 20 C -0.12 -2.27 9.73 22.60 0.22 -2.05 16 21 C -0.07 -0.72 10.16 22.44 0.23 -0.49 16 22 C -0.14 -0.90 10.11 22.42 0.23 -0.67 16 23 C 0.10 1.03 11.17 84.73 0.95 1.98 16 24 N -0.49 -9.42 10.29 -185.00 -1.90 -11.33 16 25 N -0.53 -19.18 10.84 -190.18 -2.06 -21.24 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.06 2.23 6.22 -2.39 -0.01 2.21 16 29 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.14 2.88 7.84 -2.91 -0.02 2.86 16 33 H 0.18 0.60 8.06 -2.91 -0.02 0.57 16 34 H 0.18 -0.27 8.06 -2.91 -0.02 -0.29 16 35 H 0.20 0.67 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -72.45 321.94 1.34 -71.11 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -0.79 Total: 6.91 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 5.98 Total: -9.99 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -4.69 Total: -114.63 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -1.18 Total: -0.37 kcal Total: -72.45 1.34 -71.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188316801.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.386 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds