Wall clock time and date at job start Tue Mar 31 2020 08:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48494 * 109.47540 * 274.99721 * 3 2 1 5 5 H 1.48501 * 109.47149 * 34.99765 * 3 2 1 6 6 H 1.48504 * 109.47075 * 154.99495 * 3 2 1 7 7 C 1.39892 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00078 * 209.65237 * 7 2 1 9 9 C 1.41160 * 120.00001 * 29.64575 * 7 2 1 10 10 C 1.40875 * 120.16305 * 21.27524 * 9 7 2 11 11 C 1.36375 * 119.82898 * 180.22975 * 10 9 7 12 12 C 1.39480 * 120.16794 * 359.50151 * 11 10 9 13 13 N 1.39232 * 119.83489 * 180.25552 * 12 11 10 14 14 C 1.34781 * 119.99784 * 322.41159 * 13 12 11 15 15 O 1.21578 * 120.00227 * 5.07673 * 14 13 12 16 16 N 1.34776 * 119.99795 * 185.06946 * 14 13 12 17 17 C 1.46504 * 119.99985 * 185.01902 * 16 14 13 18 18 C 1.50702 * 115.54959 * 295.28231 * 17 16 14 19 19 O 1.20822 * 119.99939 * 173.56969 * 18 17 16 20 20 O 1.34230 * 119.99874 * 353.57524 * 18 17 16 21 21 C 1.53001 * 117.50132 * 149.61045 * 17 16 14 22 22 C 1.53002 * 117.49755 * 80.95115 * 17 16 14 23 23 C 1.39483 * 120.33308 * 0.23520 * 12 11 10 24 24 C 1.36378 * 120.16729 * 0.02562 * 23 12 11 25 25 H 0.97003 * 120.00214 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.08218 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.91421 * 179.77890 * 11 10 9 28 28 H 0.97004 * 120.00708 * 142.41493 * 13 12 11 29 29 H 0.96998 * 120.00698 * 5.01698 * 16 14 13 30 30 H 0.96700 * 116.99710 * 179.97438 * 20 18 17 31 31 H 1.08998 * 117.49642 * 0.02562 * 21 17 16 32 32 H 1.08992 * 117.49784 * 145.01910 * 21 17 16 33 33 H 1.08999 * 117.49453 * 214.97715 * 22 17 16 34 34 H 1.08992 * 117.49960 * 0.02562 * 22 17 16 35 35 H 1.08002 * 119.91823 * 180.02562 * 23 12 11 36 36 H 1.07998 * 120.08532 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3847 2.1074 -1.3947 5 1 1.4971 2.6199 0.8030 6 1 3.5892 1.4119 0.5918 7 6 2.0082 -1.2115 -0.0005 8 1 2.9822 -1.2729 0.4622 9 6 1.4410 -2.3537 -0.6057 10 6 0.4273 -2.2122 -1.5737 11 6 -0.1192 -3.3205 -2.1506 12 6 0.3304 -4.5913 -1.7921 13 7 -0.2287 -5.7179 -2.3894 14 6 -1.5475 -5.7497 -2.6657 15 8 -2.2317 -4.7621 -2.4792 16 7 -2.1078 -6.8762 -3.1490 17 6 -3.5161 -6.8789 -3.5529 18 6 -4.5105 -6.6470 -2.4445 19 8 -5.6836 -6.5173 -2.7028 20 8 -4.0929 -6.5845 -1.1704 21 6 -3.9253 -7.8264 -4.6823 22 6 -3.8556 -6.3184 -4.9354 23 6 1.3375 -4.7392 -0.8385 24 6 1.8899 -3.6404 -0.2491 25 1 -0.4850 0.8401 0.0004 26 1 0.0810 -1.2287 -1.8551 27 1 -0.8989 -3.2138 -2.8902 28 1 0.3308 -6.4800 -2.6066 29 1 -1.5787 -7.6851 -3.2296 30 1 -4.7675 -6.4338 -0.4942 31 1 -3.1468 -8.4480 -5.1247 32 1 -4.9139 -8.2817 -4.6239 33 1 -4.7985 -5.7822 -5.0433 34 1 -3.0312 -5.9479 -5.5446 35 1 1.6808 -5.7263 -0.5663 36 1 2.6700 -3.7564 0.4888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203516168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:51 Heat of formation + Delta-G solvation = -61.512408 kcal Electronic energy + Delta-G solvation = -22428.776230 eV Core-core repulsion = 18879.005364 eV Total energy + Delta-G solvation = -3549.770866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76473 -39.53960 -37.74526 -36.89590 -35.87117 -34.35354 -33.19889 -32.29196 -29.43200 -28.86888 -25.59938 -24.68853 -22.97237 -21.92092 -21.20888 -20.28434 -19.86611 -18.34911 -17.96004 -17.30607 -17.23106 -16.30878 -15.41925 -15.29940 -15.10223 -14.62725 -14.24456 -14.08591 -13.86208 -13.08026 -13.01124 -12.65564 -12.03117 -11.95467 -11.90613 -11.53802 -11.45518 -11.41140 -11.13400 -11.07103 -10.88557 -10.66584 -10.49272 -10.04000 -9.82581 -9.44811 -9.19737 -9.05555 -8.61336 -7.48151 -7.08617 -6.79879 -4.23300 2.01845 2.64235 2.76526 2.92637 3.08376 3.11131 3.12835 3.20921 3.52721 3.71080 3.93273 4.38705 4.45911 4.59260 4.65634 4.88290 5.21533 5.38714 5.61049 5.72470 5.77076 6.18915 6.38544 6.45400 6.54244 6.81343 6.86861 7.06600 7.13278 7.30877 7.34202 7.64598 7.88024 7.94871 8.02553 8.09371 8.28825 8.50727 8.64178 8.89570 8.95759 9.15615 10.11302 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.026703 B = 0.003614 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.300503 B = 7746.641076 C = 8150.713932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.084 3.916 3 Si 0.900 3.100 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.466 4.466 8 H 0.081 0.919 9 C 0.110 3.890 10 C -0.171 4.171 11 C -0.075 4.075 12 C 0.000 4.000 13 N -0.663 5.663 14 C 0.699 3.301 15 O -0.562 6.562 16 N -0.716 5.716 17 C 0.110 3.890 18 C 0.523 3.477 19 O -0.524 6.524 20 O -0.493 6.493 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.097 4.097 24 C -0.222 4.222 25 H 0.283 0.717 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.390 0.610 29 H 0.398 0.602 30 H 0.409 0.591 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 -13.706 -7.528 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.494 4.494 8 H 0.099 0.901 9 C 0.107 3.893 10 C -0.191 4.191 11 C -0.096 4.096 12 C -0.092 4.092 13 N -0.309 5.309 14 C 0.400 3.600 15 O -0.437 6.437 16 N -0.374 5.374 17 C 0.019 3.981 18 C 0.365 3.635 19 O -0.413 6.413 20 O -0.302 6.302 21 C -0.177 4.177 22 C -0.175 4.175 23 C -0.118 4.118 24 C -0.242 4.242 25 H 0.094 0.906 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.222 0.778 29 H 0.233 0.767 30 H 0.267 0.733 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.167 -12.655 -7.667 15.672 hybrid contribution 0.386 0.101 0.534 0.666 sum -4.782 -12.554 -7.133 15.210 Atomic orbital electron populations 1.69951 1.07957 1.29744 1.31624 1.25948 0.94412 1.01482 0.91877 0.86443 0.81003 0.80882 0.79319 1.19171 1.20334 1.18403 1.19528 1.03791 0.93300 1.32774 0.90140 1.17610 0.90181 0.91821 0.89662 1.20785 1.01493 0.96989 0.99805 1.20456 0.98431 0.91183 0.99483 1.16873 1.03670 0.84718 1.03968 1.41975 1.05789 1.18999 1.64159 1.15949 0.82398 0.83050 0.78587 1.90940 1.61581 1.33654 1.57533 1.44288 1.08702 1.12932 1.71439 1.19495 0.81255 1.10354 0.87003 1.22186 0.87010 0.71270 0.83050 1.90701 1.18714 1.47677 1.84254 1.84572 1.45502 1.83117 1.17049 1.23461 1.04075 0.94033 0.96098 1.23497 1.04742 0.95580 0.93687 1.20045 0.98461 0.97165 0.96109 1.20457 1.06345 0.92259 1.05173 0.90611 0.87325 0.87822 0.77752 0.76679 0.73269 0.86684 0.86626 0.86731 0.86819 0.89355 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.38 11.52 55.54 0.64 -19.74 16 2 C 0.08 2.13 4.86 -17.34 -0.08 2.05 16 3 Si 0.90 18.61 29.65 -169.99 -5.04 13.57 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.47 -12.41 8.96 -37.85 -0.34 -12.75 16 8 H 0.08 2.05 7.99 -52.49 -0.42 1.63 16 9 C 0.11 2.97 5.58 -106.80 -0.60 2.37 16 10 C -0.17 -4.62 8.72 -39.26 -0.34 -4.96 16 11 C -0.08 -1.90 8.60 -39.79 -0.34 -2.24 16 12 C 0.00 0.00 6.27 -83.57 -0.52 -0.52 16 13 N -0.66 -11.66 5.30 -14.10 -0.07 -11.73 16 14 C 0.70 12.57 7.92 -86.91 -0.69 11.88 16 15 O -0.56 -12.81 13.03 4.21 0.05 -12.76 16 16 N -0.72 -9.08 5.28 -53.50 -0.28 -9.36 16 17 C 0.11 1.37 2.30 -132.97 -0.31 1.06 16 18 C 0.52 7.79 7.41 36.01 0.27 8.06 16 19 O -0.52 -8.52 17.22 -18.75 -0.32 -8.84 16 20 O -0.49 -7.18 12.40 -41.22 -0.51 -7.69 16 21 C -0.14 -1.11 10.04 -26.69 -0.27 -1.38 16 22 C -0.14 -1.47 9.98 -26.69 -0.27 -1.74 16 23 C -0.10 -2.15 9.90 -39.79 -0.39 -2.54 16 24 C -0.22 -5.43 9.74 -39.26 -0.38 -5.81 16 25 H 0.28 6.78 8.30 -40.82 -0.34 6.45 16 26 H 0.11 3.03 6.37 -52.49 -0.33 2.70 16 27 H 0.10 2.65 6.37 -52.49 -0.33 2.31 16 28 H 0.39 5.17 8.85 -40.82 -0.36 4.81 16 29 H 0.40 3.53 8.86 -40.82 -0.36 3.17 16 30 H 0.41 4.17 9.10 45.56 0.41 4.58 16 31 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.11 1.29 7.94 -51.93 -0.41 0.88 16 34 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -34.55 320.33 -8.03 -42.58 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -3.06 Total: 15.68 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -4.27 Total: -6.53 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.28 Total: -40.84 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.78 Total: -29.29 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.04 Total: 13.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.55 -8.03 -42.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203516168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.933 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds