Wall clock time and date at job start Tue Mar 31 2020 08:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48494 * 109.47540 * 274.99721 * 3 2 1 5 5 H 1.48501 * 109.47149 * 34.99765 * 3 2 1 6 6 H 1.48504 * 109.47075 * 154.99495 * 3 2 1 7 7 C 1.39892 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00078 * 209.65237 * 7 2 1 9 9 C 1.41160 * 120.00001 * 29.64575 * 7 2 1 10 10 C 1.40875 * 120.16305 * 21.27524 * 9 7 2 11 11 C 1.36375 * 119.82898 * 180.22975 * 10 9 7 12 12 C 1.39480 * 120.16794 * 359.50151 * 11 10 9 13 13 N 1.39232 * 119.83489 * 180.25552 * 12 11 10 14 14 C 1.34781 * 119.99784 * 322.41159 * 13 12 11 15 15 O 1.21578 * 120.00227 * 5.07673 * 14 13 12 16 16 N 1.34776 * 119.99795 * 185.06946 * 14 13 12 17 17 C 1.46504 * 119.99985 * 185.01902 * 16 14 13 18 18 C 1.50702 * 115.54959 * 295.28231 * 17 16 14 19 19 O 1.20822 * 119.99939 * 173.56969 * 18 17 16 20 20 O 1.34230 * 119.99874 * 353.57524 * 18 17 16 21 21 C 1.53001 * 117.50132 * 149.61045 * 17 16 14 22 22 C 1.53002 * 117.49755 * 80.95115 * 17 16 14 23 23 C 1.39483 * 120.33308 * 0.23520 * 12 11 10 24 24 C 1.36378 * 120.16729 * 0.02562 * 23 12 11 25 25 H 0.97003 * 120.00214 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.08218 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.91421 * 179.77890 * 11 10 9 28 28 H 0.97004 * 120.00708 * 142.41493 * 13 12 11 29 29 H 0.96998 * 120.00698 * 5.01698 * 16 14 13 30 30 H 0.96700 * 116.99710 * 179.97438 * 20 18 17 31 31 H 1.08998 * 117.49642 * 0.02562 * 21 17 16 32 32 H 1.08992 * 117.49784 * 145.01910 * 21 17 16 33 33 H 1.08999 * 117.49453 * 214.97715 * 22 17 16 34 34 H 1.08992 * 117.49960 * 0.02562 * 22 17 16 35 35 H 1.08002 * 119.91823 * 180.02562 * 23 12 11 36 36 H 1.07998 * 120.08532 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3847 2.1074 -1.3947 5 1 1.4971 2.6199 0.8030 6 1 3.5892 1.4119 0.5918 7 6 2.0082 -1.2115 -0.0005 8 1 2.9822 -1.2729 0.4622 9 6 1.4410 -2.3537 -0.6057 10 6 0.4273 -2.2122 -1.5737 11 6 -0.1192 -3.3205 -2.1506 12 6 0.3304 -4.5913 -1.7921 13 7 -0.2287 -5.7179 -2.3894 14 6 -1.5475 -5.7497 -2.6657 15 8 -2.2317 -4.7621 -2.4792 16 7 -2.1078 -6.8762 -3.1490 17 6 -3.5161 -6.8789 -3.5529 18 6 -4.5105 -6.6470 -2.4445 19 8 -5.6836 -6.5173 -2.7028 20 8 -4.0929 -6.5845 -1.1704 21 6 -3.9253 -7.8264 -4.6823 22 6 -3.8556 -6.3184 -4.9354 23 6 1.3375 -4.7392 -0.8385 24 6 1.8899 -3.6404 -0.2491 25 1 -0.4850 0.8401 0.0004 26 1 0.0810 -1.2287 -1.8551 27 1 -0.8989 -3.2138 -2.8902 28 1 0.3308 -6.4800 -2.6066 29 1 -1.5787 -7.6851 -3.2296 30 1 -4.7675 -6.4338 -0.4942 31 1 -3.1468 -8.4480 -5.1247 32 1 -4.9139 -8.2817 -4.6239 33 1 -4.7985 -5.7822 -5.0433 34 1 -3.0312 -5.9479 -5.5446 35 1 1.6808 -5.7263 -0.5663 36 1 2.6700 -3.7564 0.4888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203516168.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:50 Heat of formation + Delta-G solvation = -86.953232 kcal Electronic energy + Delta-G solvation = -22429.879427 eV Core-core repulsion = 18879.005364 eV Total energy + Delta-G solvation = -3550.874063 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -41.91692 -40.96302 -39.27840 -38.16894 -37.06076 -36.09353 -34.86028 -33.60820 -31.35565 -30.68396 -27.02254 -26.17292 -23.81860 -23.40101 -23.06112 -21.79861 -21.12443 -19.54798 -19.36529 -19.18454 -18.41777 -17.79086 -17.05360 -16.57037 -16.26707 -16.05526 -15.72398 -15.52114 -15.20115 -14.83065 -14.48892 -14.06672 -13.91857 -13.74738 -13.32387 -12.82927 -12.73463 -12.66983 -12.48041 -12.37876 -12.27999 -12.11922 -11.79412 -11.67696 -11.62208 -11.17300 -10.98398 -10.44909 -10.20827 -9.41642 -8.94809 -8.66429 -6.20885 0.89781 0.96085 1.18213 1.37502 1.47022 1.53001 1.58404 1.92253 2.19694 2.26646 2.69094 2.72283 3.27734 3.56264 3.72165 3.76735 4.06414 4.42398 4.48231 4.53759 4.60049 4.83902 4.98464 5.05566 5.12232 5.20686 5.30565 5.34328 5.47805 5.50588 5.68794 5.79722 6.10966 6.14815 6.21421 6.38419 6.69696 6.89710 6.93311 7.04968 7.19668 7.72315 8.25827 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.026703 B = 0.003614 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.300503 B = 7746.641076 C = 8150.713932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.042 3.958 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.502 4.502 8 H 0.083 0.917 9 C 0.079 3.921 10 C -0.196 4.196 11 C -0.089 4.089 12 C 0.016 3.984 13 N -0.653 5.653 14 C 0.698 3.302 15 O -0.614 6.614 16 N -0.688 5.688 17 C 0.075 3.925 18 C 0.515 3.485 19 O -0.548 6.548 20 O -0.506 6.506 21 C -0.089 4.089 22 C -0.148 4.148 23 C -0.091 4.091 24 C -0.231 4.231 25 H 0.289 0.711 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.415 0.585 29 H 0.421 0.579 30 H 0.422 0.578 31 H 0.155 0.845 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.134 0.866 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.293 -16.123 -8.331 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.175 4.175 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.530 4.530 8 H 0.101 0.899 9 C 0.076 3.924 10 C -0.216 4.216 11 C -0.109 4.109 12 C -0.077 4.077 13 N -0.302 5.302 14 C 0.399 3.601 15 O -0.493 6.493 16 N -0.346 5.346 17 C -0.016 4.016 18 C 0.358 3.642 19 O -0.439 6.439 20 O -0.318 6.318 21 C -0.126 4.126 22 C -0.187 4.187 23 C -0.111 4.111 24 C -0.251 4.251 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.253 0.747 29 H 0.260 0.740 30 H 0.282 0.718 31 H 0.173 0.827 32 H 0.144 0.856 33 H 0.120 0.880 34 H 0.137 0.863 35 H 0.152 0.848 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.140 -15.172 -8.485 17.870 hybrid contribution -0.039 0.670 0.745 1.003 sum -4.178 -14.502 -7.740 16.961 Atomic orbital electron populations 1.70002 1.09713 1.31034 1.32917 1.26848 0.95024 1.04946 0.90719 0.85281 0.79688 0.75929 0.79387 1.18894 1.19354 1.17421 1.19795 1.04280 0.94575 1.34365 0.89884 1.17938 0.90828 0.93394 0.90222 1.20684 1.02982 0.96605 1.01358 1.20489 0.98433 0.92375 0.99626 1.16907 1.02700 0.85142 1.02986 1.41705 1.06238 1.18455 1.63758 1.16138 0.82122 0.83629 0.78233 1.90925 1.62744 1.36083 1.59543 1.43887 1.08994 1.12075 1.69669 1.19841 0.80201 1.14550 0.87031 1.22762 0.87361 0.70586 0.83464 1.90680 1.19747 1.48962 1.84543 1.84548 1.46535 1.83020 1.17702 1.23709 1.05584 0.92420 0.90926 1.23565 1.04409 0.98339 0.92365 1.20399 0.97376 0.98569 0.94796 1.20744 1.06705 0.92062 1.05591 0.90009 0.89759 0.88949 0.74739 0.73964 0.71758 0.82746 0.85619 0.88004 0.86271 0.84841 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.90 11.52 21.82 0.25 -44.65 16 2 C 0.04 2.20 4.86 85.24 0.41 2.61 16 3 Si 0.98 38.92 29.65 68.60 2.03 40.96 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 7 C -0.50 -27.56 8.96 23.39 0.21 -27.35 16 8 H 0.08 4.33 7.99 -2.91 -0.02 4.31 16 9 C 0.08 4.37 5.58 -21.27 -0.12 4.25 16 10 C -0.20 -11.10 8.72 22.48 0.20 -10.91 16 11 C -0.09 -4.61 8.60 22.13 0.19 -4.41 16 12 C 0.02 0.72 6.27 38.57 0.24 0.96 16 13 N -0.65 -21.37 5.30 -316.79 -1.68 -23.05 16 14 C 0.70 24.02 7.92 179.05 1.42 25.44 16 15 O -0.61 -28.21 13.03 -2.93 -0.04 -28.25 16 16 N -0.69 -15.52 5.28 -441.44 -2.33 -17.85 16 17 C 0.07 1.70 2.30 2.86 0.01 1.71 16 18 C 0.51 15.01 7.41 71.24 0.53 15.54 16 19 O -0.55 -17.77 17.22 21.98 0.38 -17.39 16 20 O -0.51 -14.60 12.40 -49.53 -0.61 -15.21 16 21 C -0.09 -1.08 10.04 30.62 0.31 -0.77 16 22 C -0.15 -2.93 9.98 30.62 0.31 -2.62 16 23 C -0.09 -3.83 9.90 22.14 0.22 -3.61 16 24 C -0.23 -11.17 9.74 22.48 0.22 -10.95 16 25 H 0.29 14.46 8.30 -92.71 -0.77 13.69 16 26 H 0.08 5.05 6.37 -2.91 -0.02 5.03 16 27 H 0.09 4.92 6.37 -2.91 -0.02 4.91 16 28 H 0.42 9.36 8.85 -92.71 -0.82 8.54 16 29 H 0.42 5.65 8.86 -92.71 -0.82 4.83 16 30 H 0.42 8.72 9.10 -74.06 -0.67 8.05 16 31 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 2.26 7.94 -2.39 -0.02 2.24 16 34 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 36 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -79.48 320.33 0.99 -78.49 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -1.15 Total: 37.06 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.14 Total: -10.12 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -3.76 Total: -85.55 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -0.27 Total: -60.85 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.96 kcal Total: -79.48 0.99 -78.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203516168.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.461 kcal (2) G-P(sol) polarization free energy of solvation -79.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds