Wall clock time and date at job start Tue Mar 31 2020 08:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86792 * 119.99783 * 2 1 4 4 H 1.48501 * 109.47404 * 269.99889 * 3 2 1 5 5 H 1.48500 * 109.47411 * 30.00029 * 3 2 1 6 6 H 1.48507 * 109.46910 * 150.00226 * 3 2 1 7 7 C 1.38949 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00381 * 0.02562 * 7 2 1 9 9 N 1.37106 * 119.99531 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99458 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00909 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99522 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47055 * 180.02562 * 12 10 9 14 14 C 1.47906 * 111.00163 * 50.06104 * 13 12 10 15 15 C 1.54581 * 102.64020 * 149.25187 * 14 13 12 16 16 C 1.51631 * 102.86558 * 334.43992 * 15 14 13 17 17 C 1.38095 * 131.36757 * 196.13996 * 16 15 14 18 18 C 1.37987 * 120.28607 * 179.04231 * 17 16 15 19 19 C 1.39662 * 119.73730 * 0.58346 * 18 17 16 20 20 C 1.47743 * 120.03118 * 179.85539 * 19 18 17 21 21 O 1.21468 * 120.00440 * 179.72554 * 20 19 18 22 22 O 1.34711 * 120.00226 * 359.72565 * 20 19 18 23 23 C 1.39325 * 119.93825 * 359.57977 * 19 18 17 24 24 C 1.39098 * 107.91106 * 15.80595 * 16 15 14 25 25 H 0.96993 * 119.99683 * 359.97438 * 1 2 3 26 26 H 0.96994 * 120.00026 * 0.02562 * 9 7 2 27 27 H 1.08992 * 109.47535 * 60.00070 * 12 10 9 28 28 H 1.09005 * 109.46792 * 299.99435 * 12 10 9 29 29 H 1.08997 * 110.78044 * 30.96116 * 14 13 12 30 30 H 1.09006 * 110.93400 * 267.60993 * 14 13 12 31 31 H 1.09003 * 110.73149 * 216.09455 * 15 14 13 32 32 H 1.08997 * 110.73459 * 92.78398 * 15 14 13 33 33 H 1.07999 * 119.85649 * 359.34780 * 17 16 15 34 34 H 1.07994 * 120.13040 * 180.30124 * 18 17 16 35 35 H 0.96700 * 117.00324 * 180.02562 * 22 20 19 36 36 H 1.07989 * 119.96732 * 180.27272 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5608 -2.3705 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 5.3914 -4.5503 -1.0597 15 6 6.4827 -5.5765 -1.4411 16 6 7.7652 -4.8625 -1.0609 17 6 9.0806 -5.1037 -1.4053 18 6 10.0849 -4.2825 -0.9350 19 6 9.7681 -3.2107 -0.0974 20 6 10.8386 -2.3293 0.4124 21 8 10.5621 -1.3943 1.1368 22 8 12.1215 -2.5625 0.0740 23 6 8.4411 -2.9701 0.2522 24 6 7.4322 -3.7995 -0.2278 25 1 -0.4849 0.8400 0.0004 26 1 3.8649 -0.3633 -0.0004 27 1 5.9241 -1.8568 0.8899 28 1 5.9240 -1.8568 -0.8901 29 1 5.1365 -3.9217 -1.9129 30 1 4.5049 -5.0540 -0.6740 31 1 6.4595 -5.7848 -2.5108 32 1 6.3670 -6.4948 -0.8654 33 1 9.3238 -5.9357 -2.0494 34 1 11.1122 -4.4706 -1.2098 35 1 12.7868 -1.9591 0.4323 36 1 8.1952 -2.1388 0.8962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228539573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:10 Heat of formation + Delta-G solvation = -75.280161 kcal Electronic energy + Delta-G solvation = -22289.245435 eV Core-core repulsion = 18738.877554 eV Total energy + Delta-G solvation = -3550.367880 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.06465 -40.12489 -38.42700 -36.47779 -36.24358 -34.07672 -32.89128 -31.75962 -30.14592 -29.54746 -26.94288 -24.53017 -24.24954 -22.38717 -21.36726 -20.92023 -19.46897 -18.40337 -18.12561 -17.46862 -16.19855 -15.95214 -15.89820 -15.71315 -15.23096 -14.86223 -14.71717 -14.44992 -13.86089 -13.49604 -13.31096 -13.17174 -12.79034 -12.57711 -12.25413 -12.17689 -12.10603 -11.79501 -11.39628 -11.32844 -11.23546 -11.08254 -10.80195 -10.64067 -10.08282 -10.00634 -9.64822 -9.07920 -8.51359 -8.27070 -7.74574 -6.39050 -3.91185 0.51521 1.21207 2.34657 2.72609 2.99199 3.03201 3.11935 3.49901 3.58178 3.83364 4.04219 4.30488 4.59405 4.63580 4.79373 4.88045 5.09100 5.12677 5.14169 5.27885 5.37126 5.50542 5.63006 5.64314 5.76483 5.78377 5.93786 6.05335 6.08262 6.22401 6.29068 6.33300 6.54626 6.90942 7.15706 7.48209 7.66000 8.03827 8.48887 8.84990 9.32276 9.68958 10.73467 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.004035 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.396569 B = 6937.624620 C = 8211.382300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.044 3.956 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.121 0.879 9 N -0.582 5.582 10 C 0.447 3.553 11 O -0.565 6.565 12 C 0.032 3.968 13 N -0.452 5.452 14 C 0.061 3.939 15 C -0.095 4.095 16 C -0.103 4.103 17 C -0.096 4.096 18 C -0.092 4.092 19 C -0.107 4.107 20 C 0.529 3.471 21 O -0.513 6.513 22 O -0.513 6.513 23 C -0.079 4.079 24 C 0.094 3.906 25 H 0.275 0.725 26 H 0.372 0.628 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.124 0.876 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.413 0.587 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.070 -6.244 -3.895 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.159 4.159 3 Si 0.704 3.296 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.139 0.861 9 N -0.221 5.221 10 C 0.233 3.767 11 O -0.448 6.448 12 C -0.097 4.097 13 N -0.164 5.164 14 C -0.064 4.064 15 C -0.133 4.133 16 C -0.106 4.106 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.109 4.109 20 C 0.374 3.626 21 O -0.402 6.402 22 O -0.325 6.325 23 C -0.101 4.101 24 C -0.005 4.005 25 H 0.085 0.915 26 H 0.205 0.795 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.142 0.858 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.272 0.728 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 20.803 -7.017 -3.347 22.209 hybrid contribution 1.191 2.237 -0.210 2.543 sum 21.994 -4.780 -3.557 22.787 Atomic orbital electron populations 1.69617 1.05668 1.27703 1.48600 1.25046 0.95504 0.98058 0.97326 0.86692 0.79920 0.83964 0.79010 1.19517 1.19983 1.19349 1.19433 0.78987 0.96738 1.48462 0.86096 1.42169 1.07666 1.06066 1.66164 1.19427 0.87675 0.84801 0.84808 1.90526 1.69260 1.30471 1.54494 1.22195 0.96021 0.88622 1.02883 1.60243 0.99856 1.11641 1.44687 1.23402 0.97635 0.93955 0.91448 1.21600 0.90414 0.99171 1.02083 1.20963 0.95286 0.97198 0.97135 1.20360 0.90654 0.99836 1.00574 1.21205 0.99821 0.93703 0.96389 1.18584 0.90852 0.97967 1.03467 1.20890 0.82011 0.82564 0.77155 1.90904 1.83632 1.30418 1.35238 1.84550 1.17681 1.58831 1.71396 1.20458 0.89649 0.99503 1.00474 1.19675 0.90288 0.95655 0.94913 0.91455 0.79516 0.88377 0.91840 0.92299 0.85836 0.89768 0.88988 0.85195 0.84434 0.72827 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.17 13.96 55.50 0.77 -24.39 16 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.31 -8.49 10.16 -14.93 -0.15 -8.65 16 8 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 9 N -0.58 -13.56 5.09 -10.96 -0.06 -13.62 16 10 C 0.45 9.83 7.39 -10.98 -0.08 9.75 16 11 O -0.56 -14.16 13.15 5.55 0.07 -14.09 16 12 C 0.03 0.55 5.09 -4.97 -0.03 0.52 16 13 N -0.45 -7.42 5.06 -170.41 -0.86 -8.28 16 14 C 0.06 0.94 5.18 -2.44 -0.01 0.93 16 15 C -0.10 -1.11 7.03 -26.59 -0.19 -1.30 16 16 C -0.10 -1.26 6.23 -103.90 -0.65 -1.91 16 17 C -0.10 -0.95 10.01 -39.73 -0.40 -1.35 16 18 C -0.09 -0.91 9.62 -39.14 -0.38 -1.29 16 19 C -0.11 -1.28 5.86 -105.08 -0.62 -1.89 16 20 C 0.53 6.10 8.27 34.62 0.29 6.39 16 21 O -0.51 -7.45 17.12 -19.24 -0.33 -7.77 16 22 O -0.51 -4.02 12.67 -40.52 -0.51 -4.53 16 23 C -0.08 -1.07 9.09 -38.84 -0.35 -1.43 16 24 C 0.09 1.35 5.90 -83.42 -0.49 0.86 16 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 27 H 0.10 1.52 7.78 -51.93 -0.40 1.11 16 28 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 29 H 0.06 0.94 7.74 -51.93 -0.40 0.53 16 30 H 0.12 2.19 6.59 -51.93 -0.34 1.85 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.06 7.61 -52.49 -0.40 0.66 16 35 H 0.41 1.38 9.11 45.56 0.42 1.79 16 36 H 0.14 1.88 7.23 -52.49 -0.38 1.50 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -33.47 310.79 -7.09 -40.56 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -2.99 Total: 11.28 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -3.15 Total: 1.74 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -0.14 Total: -46.29 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.77 Total: -26.39 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.47 -7.09 -40.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228539573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.724 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds