Wall clock time and date at job start Tue Mar 31 2020 08:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86792 * 119.99783 * 2 1 4 4 H 1.48501 * 109.47404 * 269.99889 * 3 2 1 5 5 H 1.48500 * 109.47411 * 30.00029 * 3 2 1 6 6 H 1.48507 * 109.46910 * 150.00226 * 3 2 1 7 7 C 1.38949 * 119.99652 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00381 * 0.02562 * 7 2 1 9 9 N 1.37106 * 119.99531 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99458 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00909 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99522 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47055 * 180.02562 * 12 10 9 14 14 C 1.47906 * 111.00163 * 50.06104 * 13 12 10 15 15 C 1.54581 * 102.64020 * 149.25187 * 14 13 12 16 16 C 1.51631 * 102.86558 * 334.43992 * 15 14 13 17 17 C 1.38095 * 131.36757 * 196.13996 * 16 15 14 18 18 C 1.37987 * 120.28607 * 179.04231 * 17 16 15 19 19 C 1.39662 * 119.73730 * 0.58346 * 18 17 16 20 20 C 1.47743 * 120.03118 * 179.85539 * 19 18 17 21 21 O 1.21468 * 120.00440 * 179.72554 * 20 19 18 22 22 O 1.34711 * 120.00226 * 359.72565 * 20 19 18 23 23 C 1.39325 * 119.93825 * 359.57977 * 19 18 17 24 24 C 1.39098 * 107.91106 * 15.80595 * 16 15 14 25 25 H 0.96993 * 119.99683 * 359.97438 * 1 2 3 26 26 H 0.96994 * 120.00026 * 0.02562 * 9 7 2 27 27 H 1.08992 * 109.47535 * 60.00070 * 12 10 9 28 28 H 1.09005 * 109.46792 * 299.99435 * 12 10 9 29 29 H 1.08997 * 110.78044 * 30.96116 * 14 13 12 30 30 H 1.09006 * 110.93400 * 267.60993 * 14 13 12 31 31 H 1.09003 * 110.73149 * 216.09455 * 15 14 13 32 32 H 1.08997 * 110.73459 * 92.78398 * 15 14 13 33 33 H 1.07999 * 119.85649 * 359.34780 * 17 16 15 34 34 H 1.07994 * 120.13040 * 180.30124 * 18 17 16 35 35 H 0.96700 * 117.00324 * 180.02562 * 22 20 19 36 36 H 1.07989 * 119.96732 * 180.27272 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0000 12 6 5.5608 -2.3705 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 5.3914 -4.5503 -1.0597 15 6 6.4827 -5.5765 -1.4411 16 6 7.7652 -4.8625 -1.0609 17 6 9.0806 -5.1037 -1.4053 18 6 10.0849 -4.2825 -0.9350 19 6 9.7681 -3.2107 -0.0974 20 6 10.8386 -2.3293 0.4124 21 8 10.5621 -1.3943 1.1368 22 8 12.1215 -2.5625 0.0740 23 6 8.4411 -2.9701 0.2522 24 6 7.4322 -3.7995 -0.2278 25 1 -0.4849 0.8400 0.0004 26 1 3.8649 -0.3633 -0.0004 27 1 5.9241 -1.8568 0.8899 28 1 5.9240 -1.8568 -0.8901 29 1 5.1365 -3.9217 -1.9129 30 1 4.5049 -5.0540 -0.6740 31 1 6.4595 -5.7848 -2.5108 32 1 6.3670 -6.4948 -0.8654 33 1 9.3238 -5.9357 -2.0494 34 1 11.1122 -4.4706 -1.2098 35 1 12.7868 -1.9591 0.4323 36 1 8.1952 -2.1388 0.8962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228539573.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:09 Heat of formation + Delta-G solvation = -101.030038 kcal Electronic energy + Delta-G solvation = -22290.362033 eV Core-core repulsion = 18738.877554 eV Total energy + Delta-G solvation = -3551.484479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.09548 -41.08108 -40.05714 -37.52965 -37.08056 -36.01753 -34.05631 -33.69897 -31.20891 -30.52948 -28.42711 -26.02228 -25.47175 -23.31971 -22.51830 -21.79424 -21.31183 -20.20402 -19.04490 -18.41186 -17.68790 -17.22553 -16.99374 -16.65987 -16.59530 -16.28445 -15.91914 -15.67657 -15.24429 -14.83237 -14.55653 -14.44108 -14.15846 -14.01897 -13.72880 -13.43925 -13.06630 -12.97089 -12.60473 -12.51124 -12.44192 -12.35190 -12.12527 -12.02280 -11.69112 -11.55045 -11.14231 -10.33932 -10.25483 -9.94607 -8.82057 -8.45900 -6.07024 -0.36896 0.31414 1.28209 1.30878 1.40728 1.48088 1.82166 1.96367 2.18508 2.45370 2.72687 2.96103 3.09855 3.51072 3.62917 3.88894 4.00696 4.03784 4.09533 4.22279 4.27338 4.31448 4.39326 4.48366 4.82244 4.83414 4.94883 5.07820 5.19231 5.25328 5.38399 5.47815 5.56772 5.61559 5.79450 5.89795 6.10285 6.51658 6.80607 6.97006 7.30564 7.83769 8.71091 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.004035 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.396569 B = 6937.624620 C = 8211.382300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.009 4.009 3 Si 0.958 3.042 4 H -0.255 1.255 5 H -0.273 1.273 6 H -0.236 1.236 7 C -0.328 4.328 8 H 0.062 0.938 9 N -0.585 5.585 10 C 0.450 3.550 11 O -0.600 6.600 12 C 0.044 3.956 13 N -0.472 5.472 14 C 0.057 3.943 15 C -0.083 4.083 16 C -0.103 4.103 17 C -0.087 4.087 18 C -0.073 4.073 19 C -0.119 4.119 20 C 0.537 3.463 21 O -0.551 6.551 22 O -0.498 6.498 23 C -0.090 4.090 24 C 0.067 3.933 25 H 0.280 0.720 26 H 0.389 0.611 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.434 0.566 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.479 -5.894 -4.974 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.180 1.180 5 H -0.198 1.198 6 H -0.160 1.160 7 C -0.457 4.457 8 H 0.080 0.920 9 N -0.226 5.226 10 C 0.238 3.762 11 O -0.484 6.484 12 C -0.085 4.085 13 N -0.186 5.186 14 C -0.068 4.068 15 C -0.120 4.120 16 C -0.106 4.106 17 C -0.105 4.105 18 C -0.092 4.092 19 C -0.121 4.121 20 C 0.382 3.618 21 O -0.443 6.443 22 O -0.312 6.312 23 C -0.111 4.111 24 C -0.031 4.031 25 H 0.090 0.910 26 H 0.224 0.776 27 H 0.134 0.866 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.185 0.815 34 H 0.186 0.814 35 H 0.297 0.703 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 25.282 -6.690 -4.432 26.525 hybrid contribution -0.088 1.947 0.096 1.951 sum 25.194 -4.743 -4.336 26.000 Atomic orbital electron populations 1.69784 1.07983 1.29340 1.49784 1.26036 0.96412 1.02472 0.95934 0.85453 0.79449 0.77203 0.80040 1.17971 1.19779 1.15996 1.19017 0.81041 0.95169 1.50508 0.92013 1.41998 1.06084 1.07362 1.67203 1.20444 0.89969 0.83764 0.82055 1.90526 1.70929 1.31889 1.55088 1.22087 0.91408 0.90254 1.04748 1.60279 1.01527 1.10991 1.45788 1.23236 0.98073 0.94741 0.90778 1.21529 0.88651 0.98025 1.03802 1.21149 0.96409 0.96399 0.96645 1.20747 0.89242 1.00427 1.00058 1.21583 1.01312 0.91989 0.94272 1.18739 0.90353 0.98922 1.04090 1.20817 0.82933 0.81709 0.76299 1.90896 1.84371 1.32019 1.37043 1.84488 1.16673 1.59185 1.70826 1.20450 0.90490 0.99433 1.00756 1.19687 0.88986 0.97431 0.96996 0.90995 0.77569 0.86642 0.89545 0.93488 0.89198 0.87129 0.88078 0.81516 0.81392 0.70348 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.96 21.66 0.30 -55.24 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 0.96 39.07 27.74 68.60 1.90 40.97 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.24 -8.35 6.52 99.48 0.65 -7.70 16 7 C -0.33 -19.07 10.16 84.04 0.85 -18.22 16 8 H 0.06 4.23 7.39 -2.91 -0.02 4.21 16 9 N -0.59 -27.79 5.09 -306.98 -1.56 -29.35 16 10 C 0.45 20.41 7.39 87.66 0.65 21.06 16 11 O -0.60 -31.97 13.15 -3.06 -0.04 -32.01 16 12 C 0.04 1.50 5.09 85.56 0.44 1.93 16 13 N -0.47 -15.51 5.06 -693.04 -3.51 -19.02 16 14 C 0.06 1.81 5.18 86.65 0.45 2.26 16 15 C -0.08 -1.78 7.03 30.68 0.22 -1.57 16 16 C -0.10 -2.24 6.23 -19.39 -0.12 -2.36 16 17 C -0.09 -1.32 10.01 22.18 0.22 -1.10 16 18 C -0.07 -1.11 9.62 22.55 0.22 -0.89 16 19 C -0.12 -2.51 5.86 -20.16 -0.12 -2.63 16 20 C 0.54 10.99 8.27 70.34 0.58 11.58 16 21 O -0.55 -15.25 17.12 19.94 0.34 -14.91 16 22 O -0.50 -5.91 12.67 -56.21 -0.71 -6.62 16 23 C -0.09 -2.30 9.09 22.75 0.21 -2.10 16 24 C 0.07 1.83 5.90 38.24 0.23 2.06 16 25 H 0.28 15.33 8.31 -92.71 -0.77 14.55 16 26 H 0.39 15.59 5.76 -92.71 -0.53 15.05 16 27 H 0.12 3.48 7.78 -2.39 -0.02 3.46 16 28 H 0.09 2.51 8.06 -2.38 -0.02 2.49 16 29 H 0.05 1.54 7.74 -2.39 -0.02 1.52 16 30 H 0.09 3.41 6.59 -2.38 -0.02 3.40 16 31 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 34 H 0.17 1.58 7.61 -2.91 -0.02 1.56 16 35 H 0.43 1.32 9.11 -74.06 -0.67 0.64 16 36 H 0.13 3.40 7.23 -2.92 -0.02 3.38 16 Total: -1.00 -78.86 310.79 0.89 -77.97 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.12 Total: 28.22 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 4.28 Total: 9.99 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -4.77 Total: -103.61 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -0.41 Total: -53.54 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.90 Total: 40.97 kcal Total: -78.86 0.89 -77.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228539573.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.058 kcal (2) G-P(sol) polarization free energy of solvation -78.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds