Wall clock time and date at job start Tue Mar 31 2020 06:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36713 * 120.93164 * 2 1 4 4 Cl 1.73601 * 120.04486 * 0.02562 * 3 2 1 5 5 C 1.39404 * 119.90897 * 180.02562 * 3 2 1 6 6 C 1.50701 * 119.13769 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47243 * 89.99427 * 6 5 3 8 8 C 1.46502 * 120.00021 * 270.00274 * 7 6 5 9 9 C 1.36936 * 119.99757 * 90.00897 * 7 6 5 10 10 H 1.07998 * 120.00249 * 22.19074 * 9 7 6 11 11 C 1.38811 * 119.99719 * 202.20027 * 9 7 6 12 12 N 1.31613 * 120.00071 * 11.37989 * 11 9 7 13 13 Si 1.86807 * 119.99770 * 191.38008 * 11 9 7 14 14 H 1.48500 * 109.46788 * 59.99815 * 13 11 9 15 15 H 1.48495 * 109.46856 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46845 * 299.99657 * 13 11 9 17 17 N 1.31103 * 121.73213 * 0.02562 * 5 3 2 18 18 C 1.33648 * 121.33448 * 359.97438 * 17 5 3 19 19 C 1.40612 * 121.06096 * 179.97438 * 18 17 5 20 20 C 1.36071 * 119.75140 * 180.02562 * 19 18 17 21 21 C 1.39360 * 121.07081 * 0.02562 * 20 19 18 22 22 C 1.36126 * 120.87617 * 359.97438 * 21 20 19 23 23 C 1.40450 * 119.61257 * 359.72243 * 22 21 20 24 24 H 1.09001 * 109.47035 * 89.99760 * 1 2 3 25 25 H 1.09003 * 109.46951 * 330.00531 * 1 2 3 26 26 H 1.08993 * 109.47387 * 210.00011 * 1 2 3 27 27 H 1.08999 * 109.47304 * 210.00231 * 6 5 3 28 28 H 1.09002 * 109.46580 * 329.99815 * 6 5 3 29 29 H 1.08999 * 109.46566 * 93.80497 * 8 7 6 30 30 H 1.09001 * 109.46730 * 213.79946 * 8 7 6 31 31 H 1.08993 * 109.47336 * 333.80082 * 8 7 6 32 32 H 0.97003 * 120.00229 * 180.02562 * 12 11 9 33 33 H 1.07998 * 120.12394 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.46375 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.56049 * 179.97438 * 21 20 19 36 36 H 1.07999 * 120.19727 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2097 1.1727 0.0000 4 17 1.3674 2.6907 0.0007 5 6 3.6035 1.1478 -0.0005 6 6 4.3607 2.4508 -0.0011 7 7 4.6064 2.8734 1.3799 8 6 3.6323 3.7221 2.0706 9 6 5.7468 2.4753 2.0251 10 1 6.6123 2.1723 1.4545 11 6 5.7902 2.4608 3.4124 12 7 4.6823 2.6100 4.1071 13 14 7.4211 2.2294 4.2935 14 1 8.3472 3.3275 3.9169 15 1 7.1982 2.2520 5.7614 16 1 8.0143 0.9255 3.9024 17 7 4.2730 0.0206 -0.0016 18 6 3.6465 -1.1599 -0.0016 19 6 4.3703 -2.3654 -0.0032 20 6 3.7051 -3.5524 -0.0038 21 6 2.3122 -3.5963 -0.0033 22 6 1.5772 -2.4505 -0.0017 23 6 2.2302 -1.2071 0.0053 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8901 0.5138 26 1 -0.3634 -0.8899 0.5138 27 1 5.3125 2.3178 -0.5153 28 1 3.7734 3.2119 -0.5149 29 1 2.9446 3.0967 2.6397 30 1 4.1548 4.3974 2.7482 31 1 3.0730 4.3037 1.3379 32 1 4.7127 2.6003 5.0766 33 1 5.4502 -2.3492 -0.0049 34 1 4.2658 -4.4755 -0.0055 35 1 1.8093 -4.5521 -0.0041 36 1 0.4982 -2.4974 -0.0009 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263919632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:42 Heat of formation + Delta-G solvation = 52.080853 kcal Electronic energy + Delta-G solvation = -20784.605263 eV Core-core repulsion = 17680.469335 eV Total energy + Delta-G solvation = -3104.135928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89703 -38.73935 -37.51115 -36.99653 -35.50242 -33.56573 -31.56016 -31.16869 -28.80280 -28.26168 -27.76273 -24.47334 -24.33084 -22.73743 -21.60104 -19.24933 -18.71759 -18.55458 -17.27302 -16.77647 -16.10797 -15.93721 -15.46237 -15.20612 -15.10134 -14.97117 -14.76557 -14.09442 -13.98856 -13.61950 -13.21318 -13.13517 -13.03350 -12.91804 -12.71626 -12.49348 -12.47885 -12.29847 -12.17663 -12.05373 -11.92377 -11.59233 -10.94937 -10.68503 -10.40542 -9.54156 -9.11858 -8.86242 -7.86670 -5.32978 -0.58802 -0.20527 0.98311 1.10394 1.42344 1.45204 1.51405 1.92231 2.48897 3.05516 3.25479 3.42131 3.55056 3.62068 3.78893 3.88975 3.91791 4.24139 4.31879 4.43566 4.45521 4.53368 4.68865 4.70625 4.85775 4.93106 4.97780 5.01982 5.07958 5.16348 5.32078 5.43309 5.48751 5.57276 5.61592 5.71231 5.95189 6.27681 7.03895 7.12485 7.78567 8.22392 9.16255 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014438 B = 0.006828 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.884853 B = 4099.868227 C = 5412.028990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.025 4.025 3 C -0.101 4.101 4 Cl -0.046 7.046 5 C 0.150 3.850 6 C 0.185 3.815 7 N -0.594 5.594 8 C 0.186 3.814 9 C -0.252 4.252 10 H 0.068 0.932 11 C -0.051 4.051 12 N -0.936 5.936 13 Si 0.969 3.031 14 H -0.272 1.272 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.491 5.491 18 C 0.101 3.899 19 C -0.125 4.125 20 C -0.086 4.086 21 C -0.118 4.118 22 C -0.092 4.092 23 C -0.124 4.124 24 H 0.104 0.896 25 H 0.075 0.925 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.000 1.000 30 H 0.021 0.979 31 H 0.033 0.967 32 H 0.248 0.752 33 H 0.127 0.873 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 -10.434 -10.615 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.034 4.034 3 C -0.131 4.131 4 Cl -0.017 7.017 5 C -0.006 4.006 6 C 0.058 3.942 7 N -0.315 5.315 8 C 0.041 3.959 9 C -0.382 4.382 10 H 0.086 0.914 11 C -0.246 4.246 12 N -0.582 5.582 13 Si 0.796 3.204 14 H -0.198 1.198 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.202 5.202 18 C -0.020 4.020 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.136 4.136 22 C -0.111 4.111 23 C -0.127 4.127 24 H 0.123 0.877 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.018 0.982 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.145 0.855 34 H 0.179 0.821 35 H 0.186 0.814 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.609 -10.317 -10.428 17.536 hybrid contribution 0.233 0.304 0.986 1.058 sum -9.375 -10.013 -9.442 16.653 Atomic orbital electron populations 1.20997 0.86448 1.04854 1.04802 1.20464 0.98957 0.90045 0.93885 1.21545 0.93151 0.88601 1.09799 1.98308 1.76704 1.29927 1.96781 1.22855 0.90273 0.96568 0.90903 1.20157 0.97737 0.88933 0.87416 1.44248 1.21543 1.54666 1.11030 1.20575 0.90566 0.91659 0.93051 1.19469 0.90403 1.38992 0.89385 0.91446 1.25797 1.00068 1.01195 0.97530 1.70241 1.26744 1.55843 1.05358 0.85323 0.79794 0.78226 0.77008 1.19805 1.21783 1.20844 1.68029 1.39703 0.97778 1.14674 1.19568 0.91351 0.92952 0.98162 1.20971 1.00501 0.90741 1.02158 1.21319 0.95447 0.97679 0.96132 1.21356 0.93631 0.99685 0.98937 1.21344 1.01578 0.89893 0.98243 1.18912 0.93247 0.95241 1.05263 0.87728 0.90614 0.88357 0.92125 0.89714 0.98194 0.96031 0.94834 0.94299 0.85527 0.82053 0.81367 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 9.20 71.23 0.66 -1.84 16 2 C -0.02 -0.80 5.92 -19.62 -0.12 -0.92 16 3 C -0.10 -3.87 6.29 22.19 0.14 -3.73 16 4 Cl -0.05 -1.53 23.88 -2.72 -0.06 -1.60 16 5 C 0.15 6.66 6.37 42.95 0.27 6.93 16 6 C 0.18 8.33 5.57 85.63 0.48 8.81 16 7 N -0.59 -31.45 2.91 -731.31 -2.13 -33.58 16 8 C 0.19 9.57 8.16 127.77 1.04 10.61 16 9 C -0.25 -14.63 9.67 84.03 0.81 -13.82 16 10 H 0.07 3.89 7.84 -2.91 -0.02 3.87 16 11 C -0.05 -2.98 5.13 84.86 0.44 -2.54 16 12 N -0.94 -57.38 10.58 21.65 0.23 -57.15 16 13 Si 0.97 47.35 29.57 68.60 2.03 49.38 16 14 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 16 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 17 N -0.49 -22.48 10.24 -176.68 -1.81 -24.29 16 18 C 0.10 3.94 6.60 40.30 0.27 4.21 16 19 C -0.12 -4.00 9.98 22.35 0.22 -3.78 16 20 C -0.09 -1.94 9.94 22.04 0.22 -1.72 16 21 C -0.12 -2.26 9.95 22.05 0.22 -2.04 16 22 C -0.09 -2.10 9.31 22.32 0.21 -1.89 16 23 C -0.12 -4.06 5.74 -21.28 -0.12 -4.18 16 24 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.08 1.73 6.96 -2.39 -0.02 1.71 16 26 H 0.10 1.64 6.52 -2.39 -0.02 1.63 16 27 H 0.06 2.74 8.03 -2.39 -0.02 2.72 16 28 H 0.08 3.36 6.56 -2.39 -0.02 3.34 16 29 H 0.00 -0.02 7.45 -2.39 -0.02 -0.04 16 30 H 0.02 1.18 7.15 -2.39 -0.02 1.16 16 31 H 0.03 1.47 6.96 -2.39 -0.02 1.45 16 32 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 33 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 35 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.16 2.46 6.45 -2.91 -0.02 2.44 16 Total: -1.00 -73.46 310.90 4.09 -69.37 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 1.10 Total: 3.76 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.73 Total: -5.90 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -3.71 Total: -115.01 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.06 Total: -1.60 kcal Total: -73.46 4.09 -69.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263919632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.452 kcal (2) G-P(sol) polarization free energy of solvation -73.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds