Wall clock time and date at job start Tue Mar 31 2020 08:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00114 * 3 2 1 5 5 H 1.48499 * 109.47548 * 29.99893 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00403 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 C 1.47586 * 119.99856 * 179.72388 * 13 12 11 16 16 C 1.39679 * 120.20206 * 0.02562 * 15 13 12 17 17 C 1.37943 * 120.14102 * 179.97438 * 16 15 13 18 18 C 1.38397 * 120.38482 * 359.97438 * 17 16 15 19 19 C 1.38546 * 120.16527 * 0.04259 * 18 17 16 20 20 N 1.39509 * 133.31733 * 179.97438 * 19 18 17 21 21 H 0.96998 * 126.27358 * 0.02562 * 20 19 18 22 22 C 1.34789 * 107.45193 * 179.27939 * 20 19 18 23 23 O 1.21596 * 125.29004 * 180.02562 * 22 20 19 24 24 O 1.34261 * 109.42183 * 0.64317 * 22 20 19 25 25 C 1.35304 * 109.20447 * 359.45118 * 24 22 20 26 26 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 28 28 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 29 29 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 30 30 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 31 31 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 32 32 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 33 33 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 34 34 H 1.07995 * 119.93676 * 359.96880 * 16 15 13 35 35 H 1.07995 * 119.80282 * 180.02562 * 17 16 15 36 36 H 1.08004 * 119.91941 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7879 -7.5935 -0.0087 15 6 2.9424 -8.4930 -0.0151 16 6 4.3165 -8.2425 -0.0144 17 6 5.2118 -9.2919 -0.0199 18 6 4.7579 -10.5993 -0.0258 19 6 3.3980 -10.8641 -0.0269 20 7 2.6526 -12.0434 -0.0326 21 1 3.0070 -12.9463 -0.0368 22 6 1.3498 -11.6982 -0.0146 23 8 0.4165 -12.4776 -0.0132 24 8 1.2425 -10.3598 -0.0121 25 6 2.4807 -9.8141 -0.0163 26 1 -0.4851 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8881 29 1 2.8714 -3.6047 0.8890 30 1 2.8727 -3.6038 -0.8910 31 1 0.8541 -5.0447 -0.8923 32 1 0.8534 -5.0450 0.8877 33 1 3.3862 -5.9232 -0.0026 34 1 4.6789 -7.2252 -0.0095 35 1 6.2731 -9.0920 -0.0189 36 1 5.4656 -11.4152 -0.0297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269748000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:34 Heat of formation + Delta-G solvation = -63.419764 kcal Electronic energy + Delta-G solvation = -21602.460307 eV Core-core repulsion = 18052.606732 eV Total energy + Delta-G solvation = -3549.853575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.68320 -39.97769 -38.53398 -37.69319 -35.66614 -35.47361 -33.39860 -31.83899 -30.85138 -29.80660 -26.91722 -24.61920 -24.01818 -23.27976 -22.89307 -20.95347 -20.48769 -19.12258 -18.58645 -17.70047 -17.27152 -16.49977 -16.20208 -15.98942 -15.62612 -15.39999 -15.01660 -14.48802 -14.34335 -14.14022 -13.85913 -13.44725 -13.17898 -12.84348 -12.36542 -12.29834 -11.86469 -11.81142 -11.49346 -11.38990 -10.92432 -10.76735 -10.62353 -10.06039 -9.90270 -9.44447 -9.38424 -9.14525 -8.85232 -8.77691 -8.38948 -6.03341 -4.06790 0.15413 0.60331 1.85275 2.06605 2.44981 2.55817 3.08699 3.29542 3.36203 3.36569 3.38507 3.83766 4.27361 4.41091 4.43058 4.48929 4.59637 4.68505 5.12234 5.25302 5.32484 5.52661 5.67389 5.70781 5.73471 5.88366 6.02232 6.11784 6.37325 6.55416 6.70439 6.76745 6.95902 7.29931 7.55377 7.61556 7.73772 7.95057 8.22370 8.35894 8.99934 9.57571 11.07936 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.033911 B = 0.002637 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.500410 B =10616.804670 C =11416.537860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.717 5.717 13 C 0.546 3.454 14 O -0.521 6.521 15 C -0.090 4.090 16 C -0.074 4.074 17 C -0.104 4.104 18 C -0.079 4.079 19 C 0.058 3.942 20 N -0.648 5.648 21 H 0.444 0.556 22 C 0.635 3.365 23 O -0.483 6.483 24 O -0.210 6.210 25 C 0.094 3.906 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.398 0.602 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.245 -23.057 -0.046 27.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.368 5.368 13 C 0.331 3.669 14 O -0.398 6.398 15 C -0.094 4.094 16 C -0.094 4.094 17 C -0.122 4.122 18 C -0.100 4.100 19 C -0.041 4.041 20 N -0.306 5.306 21 H 0.287 0.713 22 C 0.389 3.611 23 O -0.365 6.365 24 O -0.114 6.114 25 C 0.045 3.955 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.166 0.834 35 H 0.166 0.834 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.307 -23.293 -0.043 26.826 hybrid contribution 1.072 0.468 -0.010 1.170 sum 14.379 -22.825 -0.052 26.976 Atomic orbital electron populations 1.69961 1.06074 1.26740 1.50441 1.25032 0.94851 0.99322 0.95265 0.86581 0.79783 0.83447 0.78093 1.20659 1.21211 1.19895 1.21191 0.92972 0.90916 1.51066 0.92626 1.19033 0.93855 0.90804 0.97750 1.21900 0.99819 0.93207 1.00942 1.21735 0.91795 0.84736 1.02411 1.46101 1.10962 1.05499 1.74247 1.17969 0.87992 0.82878 0.78042 1.90878 1.15714 1.84519 1.48685 1.19164 0.94192 0.89331 1.06714 1.21269 0.89978 1.00803 0.97318 1.20972 1.00724 0.90757 0.99794 1.20278 0.90646 0.98332 1.00766 1.18415 0.93946 0.85041 1.06651 1.43639 1.06197 1.09012 1.71798 0.71285 1.18694 0.83367 0.80959 0.78104 1.91202 1.40763 1.49383 1.55163 1.85213 1.27746 1.19503 1.78930 1.18752 0.80963 0.93060 1.02691 0.92885 0.96218 0.96211 0.92613 0.92619 0.91409 0.91389 0.76722 0.83360 0.83398 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16 11 C 0.12 1.95 5.67 -4.04 -0.02 1.93 16 12 N -0.72 -9.59 5.51 -61.33 -0.34 -9.92 16 13 C 0.55 8.13 7.77 -12.45 -0.10 8.04 16 14 O -0.52 -10.23 16.08 -6.04 -0.10 -10.33 16 15 C -0.09 -1.00 5.88 -104.90 -0.62 -1.61 16 16 C -0.07 -0.49 9.53 -39.15 -0.37 -0.86 16 17 C -0.10 -0.45 10.02 -39.63 -0.40 -0.85 16 18 C -0.08 -0.37 10.06 -39.41 -0.40 -0.77 16 19 C 0.06 0.47 7.25 -83.81 -0.61 -0.14 16 20 N -0.65 -5.07 6.23 -14.39 -0.09 -5.16 16 21 H 0.44 1.81 8.96 -40.82 -0.37 1.44 16 22 C 0.64 8.08 9.44 54.06 0.51 8.59 16 23 O -0.48 -7.52 18.05 -19.00 -0.34 -7.86 16 24 O -0.21 -3.11 10.03 -26.05 -0.26 -3.37 16 25 C 0.09 1.12 6.94 -38.49 -0.27 0.85 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.40 3.86 6.50 -40.82 -0.27 3.60 16 34 H 0.15 0.63 6.40 -52.49 -0.34 0.30 16 35 H 0.15 0.19 8.06 -52.49 -0.42 -0.24 16 36 H 0.14 0.21 8.06 -52.48 -0.42 -0.21 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -36.54 320.29 -7.43 -43.97 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -3.89 Total: -2.56 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.96 Total: 0.12 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.31 Total: -40.94 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.70 Total: -21.56 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.54 -7.43 -43.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269748000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.446 kcal (2) G-P(sol) polarization free energy of solvation -36.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds