Wall clock time and date at job start Tue Mar 31 2020 08:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00114 * 3 2 1 5 5 H 1.48499 * 109.47548 * 29.99893 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00403 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21583 * 120.00270 * 359.72083 * 13 12 11 15 15 C 1.47586 * 119.99856 * 179.72388 * 13 12 11 16 16 C 1.39679 * 120.20206 * 0.02562 * 15 13 12 17 17 C 1.37943 * 120.14102 * 179.97438 * 16 15 13 18 18 C 1.38397 * 120.38482 * 359.97438 * 17 16 15 19 19 C 1.38546 * 120.16527 * 0.04259 * 18 17 16 20 20 N 1.39509 * 133.31733 * 179.97438 * 19 18 17 21 21 H 0.96998 * 126.27358 * 0.02562 * 20 19 18 22 22 C 1.34789 * 107.45193 * 179.27939 * 20 19 18 23 23 O 1.21596 * 125.29004 * 180.02562 * 22 20 19 24 24 O 1.34261 * 109.42183 * 0.64317 * 22 20 19 25 25 C 1.35304 * 109.20447 * 359.45118 * 24 22 20 26 26 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 28 28 H 1.09007 * 109.46560 * 299.99875 * 9 7 2 29 29 H 1.08995 * 109.47672 * 60.00122 * 10 9 7 30 30 H 1.09006 * 109.46819 * 299.99551 * 10 9 7 31 31 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 32 32 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 33 33 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 34 34 H 1.07995 * 119.93676 * 359.96880 * 16 15 13 35 35 H 1.07995 * 119.80282 * 180.02562 * 17 16 15 36 36 H 1.08004 * 119.91941 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 7 2.4325 -6.1006 -0.0024 13 6 1.9833 -7.3712 -0.0086 14 8 0.7879 -7.5935 -0.0087 15 6 2.9424 -8.4930 -0.0151 16 6 4.3165 -8.2425 -0.0144 17 6 5.2118 -9.2919 -0.0199 18 6 4.7579 -10.5993 -0.0258 19 6 3.3980 -10.8641 -0.0269 20 7 2.6526 -12.0434 -0.0326 21 1 3.0070 -12.9463 -0.0368 22 6 1.3498 -11.6982 -0.0146 23 8 0.4165 -12.4776 -0.0132 24 8 1.2425 -10.3598 -0.0121 25 6 2.4807 -9.8141 -0.0163 26 1 -0.4851 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8881 29 1 2.8714 -3.6047 0.8890 30 1 2.8727 -3.6038 -0.8910 31 1 0.8541 -5.0447 -0.8923 32 1 0.8534 -5.0450 0.8877 33 1 3.3862 -5.9232 -0.0026 34 1 4.6789 -7.2252 -0.0095 35 1 6.2731 -9.0920 -0.0189 36 1 5.4656 -11.4152 -0.0297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269748000.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:34 Heat of formation + Delta-G solvation = -91.557737 kcal Electronic energy + Delta-G solvation = -21603.680461 eV Core-core repulsion = 18052.606732 eV Total energy + Delta-G solvation = -3551.073729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.48739 -41.04131 -39.46892 -38.54111 -37.01420 -36.40394 -35.22215 -33.25112 -31.91436 -30.48532 -28.61551 -25.81290 -24.81192 -24.37502 -23.98023 -22.34505 -21.81145 -19.83828 -19.55003 -18.59469 -18.49566 -18.15080 -17.12793 -16.88092 -16.74152 -16.64209 -16.41714 -15.71557 -15.49583 -15.11663 -14.92746 -14.51392 -14.24615 -13.88819 -13.76366 -13.52947 -13.37567 -12.94523 -12.74064 -12.52576 -12.38255 -12.30275 -12.22350 -11.65393 -11.60698 -11.24657 -10.99838 -10.53816 -10.27222 -9.89271 -9.43296 -8.17599 -6.29283 -0.50819 0.02582 1.10299 1.12952 1.43783 1.45228 1.56097 1.73728 1.77121 2.00999 2.44156 2.58579 3.16535 3.16568 3.62635 3.68338 3.90702 4.12765 4.13596 4.21123 4.22252 4.53726 4.55824 4.77876 4.95378 4.97393 5.10539 5.19591 5.23502 5.36608 5.38286 5.49063 5.54353 5.72659 5.86264 5.94594 6.23382 6.48047 6.53514 6.89071 7.14100 7.40677 8.94701 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.033911 B = 0.002637 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.500410 B =10616.804670 C =11416.537860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.128 3.872 12 N -0.700 5.700 13 C 0.542 3.458 14 O -0.584 6.584 15 C -0.118 4.118 16 C -0.059 4.059 17 C -0.084 4.084 18 C -0.050 4.050 19 C 0.057 3.943 20 N -0.619 5.619 21 H 0.461 0.539 22 C 0.627 3.373 23 O -0.529 6.529 24 O -0.251 6.251 25 C 0.048 3.952 26 H 0.262 0.738 27 H -0.010 1.010 28 H -0.010 1.010 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.419 0.581 34 H 0.176 0.824 35 H 0.198 0.802 36 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.976 -23.463 -0.056 31.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.181 1.181 7 C -0.576 4.576 8 H 0.089 0.911 9 C -0.017 4.017 10 C -0.137 4.137 11 C 0.004 3.996 12 N -0.353 5.353 13 C 0.330 3.670 14 O -0.465 6.465 15 C -0.122 4.122 16 C -0.078 4.078 17 C -0.103 4.103 18 C -0.070 4.070 19 C -0.041 4.041 20 N -0.279 5.279 21 H 0.309 0.691 22 C 0.381 3.619 23 O -0.415 6.415 24 O -0.155 6.155 25 C 0.001 3.999 26 H 0.071 0.929 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.258 0.742 34 H 0.193 0.807 35 H 0.215 0.785 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 19.158 -23.708 -0.053 30.481 hybrid contribution -0.588 0.595 -0.008 0.836 sum 18.570 -23.113 -0.061 29.649 Atomic orbital electron populations 1.70123 1.08091 1.27765 1.51870 1.26060 0.95710 1.03708 0.94868 0.85398 0.78748 0.78169 0.78427 1.19862 1.21361 1.18066 1.21698 0.93900 0.91811 1.50183 0.91075 1.18963 0.94550 0.93204 0.94944 1.21597 0.98378 0.91095 1.02669 1.21300 0.92038 0.85558 1.00721 1.45766 1.11458 1.04288 1.73744 1.18662 0.88016 0.83894 0.76381 1.90843 1.18667 1.85424 1.51571 1.19026 0.95202 0.87386 1.10627 1.21695 0.87896 1.03215 0.94974 1.21588 1.02519 0.89472 0.96675 1.20955 0.89256 1.00190 0.96635 1.18689 0.94688 0.83407 1.07355 1.43358 1.04368 1.10094 1.70048 0.69094 1.18821 0.84451 0.80274 0.78394 1.91141 1.42445 1.50289 1.57606 1.85113 1.30450 1.20682 1.79298 1.19262 0.80681 0.94601 1.05393 0.92902 0.99180 0.99170 0.90742 0.90725 0.93330 0.93307 0.74170 0.80713 0.78463 0.79362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 3 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.54 -29.35 9.11 25.60 0.23 -29.12 16 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 11 C 0.13 4.46 5.67 86.38 0.49 4.95 16 12 N -0.70 -18.39 5.51 -466.21 -2.57 -20.95 16 13 C 0.54 16.70 7.77 86.71 0.67 17.37 16 14 O -0.58 -24.90 16.08 6.86 0.11 -24.79 16 15 C -0.12 -2.52 5.88 -20.05 -0.12 -2.64 16 16 C -0.06 -0.52 9.53 22.55 0.21 -0.31 16 17 C -0.08 -0.16 10.02 22.24 0.22 0.06 16 18 C -0.05 -0.17 10.06 22.38 0.23 0.05 16 19 C 0.06 0.78 7.25 38.28 0.28 1.05 16 20 N -0.62 -9.03 6.23 -430.00 -2.68 -11.71 16 21 H 0.46 2.84 8.96 -92.71 -0.83 2.00 16 22 C 0.63 17.01 9.44 129.79 1.23 18.23 16 23 O -0.53 -17.84 18.05 19.20 0.35 -17.50 16 24 O -0.25 -8.10 10.03 15.50 0.16 -7.94 16 25 C 0.05 1.16 6.94 22.97 0.16 1.32 16 26 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 31 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.42 7.02 6.50 -92.71 -0.60 6.42 16 34 H 0.18 0.54 6.40 -2.91 -0.02 0.52 16 35 H 0.20 -1.33 8.06 -2.91 -0.02 -1.35 16 36 H 0.19 -0.98 8.06 -2.91 -0.02 -1.00 16 Total: -1.00 -88.91 320.29 1.77 -87.15 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: -0.29 Total: -1.13 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 4.38 Total: 8.84 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -4.96 Total: -89.75 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: 0.61 Total: -50.23 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -88.91 1.77 -87.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269748000.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.412 kcal (2) G-P(sol) polarization free energy of solvation -88.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds