Wall clock time and date at job start Tue Mar 31 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47429 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99888 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47041 * 179.97438 * 12 11 10 14 14 C 1.36085 * 120.11969 * 260.00241 * 13 12 11 15 15 C 1.39419 * 121.05078 * 180.02562 * 14 13 12 16 16 Cl 1.73602 * 119.58037 * 180.02562 * 15 14 13 17 17 C 1.36289 * 120.84593 * 0.02562 * 15 14 13 18 18 C 1.40372 * 119.60261 * 359.97438 * 17 15 14 19 19 C 1.40782 * 121.37385 * 180.02562 * 18 17 15 20 20 C 1.36581 * 118.14825 * 179.18073 * 19 18 17 21 21 C 1.39329 * 119.93794 * 0.78804 * 20 19 18 22 22 N 1.31078 * 121.75577 * 359.46014 * 21 20 19 23 23 C 1.33690 * 121.32391 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 26 26 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 27 27 H 1.09004 * 109.46862 * 60.00067 * 10 9 7 28 28 H 1.09000 * 109.47250 * 300.00090 * 10 9 7 29 29 H 1.00901 * 111.00013 * 303.95621 * 11 10 9 30 30 H 1.08997 * 109.47334 * 299.99788 * 12 11 10 31 31 H 1.08995 * 109.47296 * 60.00089 * 12 11 10 32 32 H 1.07999 * 119.47293 * 359.97438 * 14 13 12 33 33 H 1.07995 * 120.19676 * 180.02562 * 17 15 14 34 34 H 1.08004 * 120.92115 * 359.97398 * 19 18 17 35 35 H 1.08006 * 120.02905 * 180.20015 * 20 19 18 36 36 H 1.08007 * 119.12451 * 179.44077 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 7 1.5106 -4.9343 -0.0033 12 6 2.4351 -6.0759 -0.0037 13 6 1.6471 -7.3605 -0.0035 14 6 1.4645 -8.0495 1.1557 15 6 0.7394 -9.2401 1.1780 16 17 0.5295 -10.0876 2.6784 17 6 0.1932 -9.7471 0.0369 18 6 0.3621 -9.0620 -1.1766 19 6 -0.1864 -9.5516 -2.3772 20 6 0.0039 -8.8231 -3.5167 21 6 0.7382 -7.6399 -3.4711 22 7 1.2521 -7.1896 -2.3525 23 6 1.0934 -7.8483 -1.2000 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5576 0.8880 27 1 2.8718 -3.6051 0.8873 28 1 2.8718 -3.6035 -0.8927 29 1 0.8744 -4.9848 0.7783 30 1 3.0631 -6.0346 -0.8936 31 1 3.0630 -6.0352 0.8863 32 1 1.8888 -7.6684 2.0728 33 1 -0.3669 -10.6700 0.0663 34 1 -0.7529 -10.4710 -2.3942 35 1 -0.4064 -9.1688 -4.4540 36 1 0.8883 -7.0789 -4.3817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273070049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:49 Heat of formation + Delta-G solvation = 38.048490 kcal Electronic energy + Delta-G solvation = -19429.766567 eV Core-core repulsion = 16325.022150 eV Total energy + Delta-G solvation = -3104.744417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.03134 -37.82046 -36.69308 -35.69501 -33.83766 -32.68971 -30.89204 -30.52795 -28.84235 -25.60985 -24.28985 -23.75435 -23.25527 -20.97704 -20.44252 -18.49463 -17.21772 -17.19088 -16.26569 -15.36493 -14.98512 -14.81777 -14.72678 -14.37651 -14.05625 -13.68652 -13.49007 -13.22140 -13.02630 -12.63625 -12.33425 -12.11770 -11.76874 -11.63623 -11.13017 -11.06921 -10.96905 -10.87469 -10.65673 -10.49966 -9.94029 -9.49691 -9.33027 -9.12760 -8.87579 -8.33824 -8.30589 -7.72536 -5.95530 -3.98045 0.16244 0.58810 1.78987 1.85565 2.63412 3.36269 3.40341 3.42884 3.92552 4.19514 4.30675 4.48241 4.51658 4.67101 4.77348 4.82685 4.91785 5.10421 5.24240 5.37371 5.40245 5.57302 5.61415 5.74634 5.81157 5.94977 5.99213 6.20771 6.28092 6.39772 6.49515 6.60241 7.03711 7.51276 7.77049 7.87225 7.90544 8.00690 8.13949 8.48076 9.09161 9.65340 11.15911 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.003374 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.421898 B = 8296.967497 C = 9407.726721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.069 3.931 11 N -0.677 5.677 12 C 0.105 3.895 13 C -0.027 4.027 14 C -0.104 4.104 15 C -0.024 4.024 16 Cl -0.070 7.070 17 C -0.094 4.094 18 C -0.097 4.097 19 C -0.062 4.062 20 C -0.170 4.170 21 C 0.130 3.870 22 N -0.440 5.440 23 C 0.145 3.855 24 H 0.261 0.739 25 H 0.025 0.975 26 H 0.013 0.987 27 H 0.014 0.986 28 H 0.060 0.940 29 H 0.333 0.667 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 -24.145 -2.262 24.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.059 4.059 11 N -0.307 5.307 12 C -0.025 4.025 13 C -0.028 4.028 14 C -0.125 4.125 15 C -0.050 4.050 16 Cl -0.041 7.041 17 C -0.114 4.114 18 C -0.099 4.099 19 C -0.088 4.088 20 C -0.190 4.190 21 C -0.043 4.043 22 N -0.147 5.147 23 C 0.023 3.977 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.107 0.893 31 H 0.051 0.949 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.155 0.845 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.521 -23.289 -2.695 23.450 hybrid contribution 0.111 0.056 1.039 1.047 sum 0.632 -23.233 -1.655 23.300 Atomic orbital electron populations 1.69966 1.06036 1.26643 1.50655 1.24998 0.94826 0.99169 0.95342 0.86652 0.79559 0.83150 0.78583 1.20211 1.21302 1.20313 1.21144 0.92947 0.91023 1.50876 0.92800 1.19051 0.94020 0.90343 0.97688 1.22162 0.96956 0.88113 0.98671 1.60563 1.19328 1.01364 1.49485 1.20784 0.93460 0.86905 1.01305 1.19640 0.96525 0.96318 0.90311 1.20691 0.99265 0.93688 0.98860 1.20559 1.01810 0.95203 0.87459 1.98376 1.96169 1.76962 1.32580 1.20783 1.00090 1.00285 0.90211 1.18688 1.00534 0.96411 0.94293 1.21374 0.96749 0.99308 0.91380 1.21952 1.00703 0.96821 0.99487 1.23116 0.91875 0.92846 0.96475 1.68179 1.18793 1.30014 0.97685 1.18723 0.95530 0.90656 0.92812 0.92977 0.95628 0.96912 0.96738 0.92119 0.84972 0.89318 0.94901 0.84345 0.84424 0.84420 0.84464 0.82199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.71 5.23 -27.89 -0.15 0.56 16 10 C 0.07 1.49 5.62 -3.82 -0.02 1.47 16 11 N -0.68 -12.70 6.49 -115.06 -0.75 -13.45 16 12 C 0.10 1.62 5.48 -4.97 -0.03 1.59 16 13 C -0.03 -0.37 5.40 -104.51 -0.56 -0.94 16 14 C -0.10 -1.27 9.34 -39.92 -0.37 -1.64 16 15 C -0.02 -0.26 6.28 -39.84 -0.25 -0.51 16 16 Cl -0.07 -0.70 28.92 -51.86 -1.50 -2.20 16 17 C -0.09 -0.98 9.52 -39.48 -0.38 -1.35 16 18 C -0.10 -1.14 5.74 -106.80 -0.61 -1.75 16 19 C -0.06 -0.57 9.90 -39.22 -0.39 -0.96 16 20 C -0.17 -1.50 10.03 -39.77 -0.40 -1.90 16 21 C 0.13 1.48 11.14 -17.47 -0.19 1.28 16 22 N -0.44 -6.57 9.61 -10.97 -0.11 -6.68 16 23 C 0.15 2.08 6.59 -84.85 -0.56 1.52 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.33 6.11 8.72 -39.29 -0.34 5.76 16 30 H 0.09 1.44 7.88 -51.93 -0.41 1.03 16 31 H 0.03 0.47 7.97 -51.93 -0.41 0.05 16 32 H 0.14 1.50 8.00 -52.49 -0.42 1.08 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 35 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.16 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -32.48 327.42 -10.53 -43.01 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.51 Total: 0.50 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -4.32 Total: -16.41 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.12 Total: -46.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.48 -10.53 -43.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.061 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds