Wall clock time and date at job start Tue Mar 31 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48503 * 109.47086 * 239.99991 * 3 2 1 5 5 H 1.48503 * 109.47151 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99935 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47429 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.46898 * 110.99888 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47041 * 179.97438 * 12 11 10 14 14 C 1.36085 * 120.11969 * 260.00241 * 13 12 11 15 15 C 1.39419 * 121.05078 * 180.02562 * 14 13 12 16 16 Cl 1.73602 * 119.58037 * 180.02562 * 15 14 13 17 17 C 1.36289 * 120.84593 * 0.02562 * 15 14 13 18 18 C 1.40372 * 119.60261 * 359.97438 * 17 15 14 19 19 C 1.40782 * 121.37385 * 180.02562 * 18 17 15 20 20 C 1.36581 * 118.14825 * 179.18073 * 19 18 17 21 21 C 1.39329 * 119.93794 * 0.78804 * 20 19 18 22 22 N 1.31078 * 121.75577 * 359.46014 * 21 20 19 23 23 C 1.33690 * 121.32391 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 26 26 H 1.09004 * 109.47476 * 300.00008 * 9 7 2 27 27 H 1.09004 * 109.46862 * 60.00067 * 10 9 7 28 28 H 1.09000 * 109.47250 * 300.00090 * 10 9 7 29 29 H 1.00901 * 111.00013 * 303.95621 * 11 10 9 30 30 H 1.08997 * 109.47334 * 299.99788 * 12 11 10 31 31 H 1.08995 * 109.47296 * 60.00089 * 12 11 10 32 32 H 1.07999 * 119.47293 * 359.97438 * 14 13 12 33 33 H 1.07995 * 120.19676 * 180.02562 * 17 15 14 34 34 H 1.08004 * 120.92115 * 359.97398 * 19 18 17 35 35 H 1.08006 * 120.02905 * 180.20015 * 20 19 18 36 36 H 1.08007 * 119.12451 * 179.44077 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 7 1.5106 -4.9343 -0.0033 12 6 2.4351 -6.0759 -0.0037 13 6 1.6471 -7.3605 -0.0035 14 6 1.4645 -8.0495 1.1557 15 6 0.7394 -9.2401 1.1780 16 17 0.5295 -10.0876 2.6784 17 6 0.1932 -9.7471 0.0369 18 6 0.3621 -9.0620 -1.1766 19 6 -0.1864 -9.5516 -2.3772 20 6 0.0039 -8.8231 -3.5167 21 6 0.7382 -7.6399 -3.4711 22 7 1.2521 -7.1896 -2.3525 23 6 1.0934 -7.8483 -1.2000 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5576 0.8880 27 1 2.8718 -3.6051 0.8873 28 1 2.8718 -3.6035 -0.8927 29 1 0.8744 -4.9848 0.7783 30 1 3.0631 -6.0346 -0.8936 31 1 3.0630 -6.0352 0.8863 32 1 1.8888 -7.6684 2.0728 33 1 -0.3669 -10.6700 0.0663 34 1 -0.7529 -10.4710 -2.3942 35 1 -0.4064 -9.1688 -4.4540 36 1 0.8883 -7.0789 -4.3817 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273070049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:48 Heat of formation + Delta-G solvation = 17.757047 kcal Electronic energy + Delta-G solvation = -19430.646470 eV Core-core repulsion = 16325.022150 eV Total energy + Delta-G solvation = -3105.624320 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89017 -38.71092 -37.82082 -36.87401 -35.32698 -34.30581 -32.14630 -31.43110 -30.42198 -27.15052 -25.41576 -24.78481 -24.57457 -22.48614 -21.86670 -19.32081 -18.51552 -18.09064 -18.07104 -16.68436 -16.40716 -15.95900 -15.89874 -15.62723 -15.12660 -15.07345 -14.65039 -14.18493 -14.09343 -13.86331 -13.81341 -13.56945 -13.11154 -12.85766 -12.74580 -12.53040 -12.45339 -11.97035 -11.92490 -11.91583 -11.54006 -11.40322 -11.23658 -10.55967 -10.32059 -9.72519 -9.31903 -9.15340 -8.19787 -6.31848 -0.67154 -0.26342 0.95603 1.02767 1.40318 1.44219 1.52087 1.78198 2.41130 3.02635 3.13333 3.31034 3.44431 3.57727 3.73824 3.93296 3.98837 4.05281 4.14871 4.31811 4.47168 4.53478 4.61262 4.63804 4.68545 4.90185 4.97236 5.01299 5.05984 5.18504 5.28994 5.42545 5.44793 5.66371 5.77700 5.79063 6.12179 6.26248 6.51070 6.84989 7.05288 7.37370 8.92374 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.003374 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.421898 B = 8296.967497 C = 9407.726721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.035 3.965 10 C 0.089 3.911 11 N -0.684 5.684 12 C 0.114 3.886 13 C -0.056 4.056 14 C -0.097 4.097 15 C -0.039 4.039 16 Cl -0.059 7.059 17 C -0.077 4.077 18 C -0.113 4.113 19 C -0.055 4.055 20 C -0.165 4.165 21 C 0.120 3.880 22 N -0.493 5.493 23 C 0.120 3.880 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.022 0.978 28 H 0.056 0.944 29 H 0.334 0.666 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.146 0.854 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.176 0.824 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 -25.732 -2.603 25.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.003 4.003 10 C -0.040 4.040 11 N -0.315 5.315 12 C -0.015 4.015 13 C -0.057 4.057 14 C -0.118 4.118 15 C -0.066 4.066 16 Cl -0.030 7.030 17 C -0.097 4.097 18 C -0.116 4.116 19 C -0.081 4.081 20 C -0.185 4.185 21 C -0.052 4.052 22 N -0.201 5.201 23 C -0.001 4.001 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.151 0.849 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.164 0.836 33 H 0.187 0.813 34 H 0.195 0.805 35 H 0.194 0.806 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.565 -24.903 -3.033 25.094 hybrid contribution 0.026 0.431 1.085 1.168 sum 0.591 -24.472 -1.948 24.556 Atomic orbital electron populations 1.70112 1.07908 1.27884 1.51355 1.25999 0.95769 1.03444 0.94526 0.85450 0.78223 0.77801 0.79246 1.19127 1.20736 1.19021 1.21582 0.93566 0.92174 1.51089 0.92041 1.18885 0.94243 0.92339 0.94807 1.21755 0.95528 0.87976 0.98741 1.60430 1.20024 1.01259 1.49770 1.20655 0.93096 0.86564 1.01171 1.19500 0.98484 0.96290 0.91456 1.20790 0.98674 0.93879 0.98438 1.20593 1.02383 0.95232 0.88343 1.98377 1.96136 1.76572 1.31958 1.21134 0.98640 1.00616 0.89268 1.18962 1.00727 0.95872 0.96003 1.21867 0.95717 1.00299 0.90177 1.22309 0.99545 0.95465 1.01168 1.23609 0.91471 0.93991 0.96132 1.68121 1.21164 1.31905 0.98908 1.18947 0.96536 0.91971 0.92679 0.92733 0.99151 0.99153 0.95965 0.92562 0.84873 0.90624 0.93558 0.83591 0.81335 0.80467 0.80636 0.80750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.42 13.29 21.45 0.28 -58.13 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.55 -32.18 9.11 25.60 0.23 -31.94 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.94 5.23 29.84 0.16 2.10 16 10 C 0.09 3.97 5.62 86.30 0.49 4.45 16 11 N -0.68 -26.76 6.49 -517.93 -3.36 -30.13 16 12 C 0.11 3.65 5.48 85.56 0.47 4.12 16 13 C -0.06 -1.61 5.40 -19.80 -0.11 -1.72 16 14 C -0.10 -2.33 9.34 22.05 0.21 -2.13 16 15 C -0.04 -0.81 6.28 22.10 0.14 -0.68 16 16 Cl -0.06 -1.09 28.92 -2.72 -0.08 -1.17 16 17 C -0.08 -1.43 9.52 22.33 0.21 -1.21 16 18 C -0.11 -2.48 5.74 -21.28 -0.12 -2.60 16 19 C -0.05 -0.83 9.90 22.50 0.22 -0.61 16 20 C -0.17 -2.49 10.03 22.14 0.22 -2.27 16 21 C 0.12 2.67 11.14 85.07 0.95 3.61 16 22 N -0.49 -15.10 9.61 -188.62 -1.81 -16.91 16 23 C 0.12 3.48 6.59 40.29 0.27 3.74 16 24 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 25 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 26 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 27 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.33 12.81 8.72 -89.69 -0.78 12.03 16 30 H 0.08 2.59 7.88 -2.39 -0.02 2.57 16 31 H 0.05 1.33 7.97 -2.39 -0.02 1.31 16 32 H 0.15 3.13 8.00 -2.91 -0.02 3.10 16 33 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 35 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -72.65 327.42 1.16 -71.48 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.31 Total: 12.32 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 3.79 Total: -24.63 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -4.89 Total: -105.17 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -72.65 1.16 -71.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273070049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.240 kcal (2) G-P(sol) polarization free energy of solvation -72.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds