Wall clock time and date at job start Tue Mar 31 2020 08:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00006 * 2 1 4 4 H 1.48503 * 109.47390 * 270.00049 * 3 2 1 5 5 H 1.48499 * 109.47070 * 30.00206 * 3 2 1 6 6 H 1.48504 * 109.47397 * 150.00113 * 3 2 1 7 7 C 1.37884 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99389 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46822 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47035 * 179.97438 * 10 9 7 12 12 C 1.34781 * 119.99969 * 179.97438 * 11 10 9 13 13 O 1.21590 * 119.99590 * 0.02562 * 12 11 10 14 14 C 1.47603 * 120.00079 * 180.02562 * 12 11 10 15 15 C 1.39719 * 120.02801 * 359.97438 * 14 12 11 16 16 C 1.37810 * 120.05529 * 180.02562 * 15 14 12 17 17 C 1.38819 * 120.02444 * 359.95476 * 16 15 14 18 18 C 1.39666 * 120.19561 * 0.06635 * 17 16 15 19 19 C 1.37980 * 120.01906 * 359.95174 * 18 17 16 20 20 O 1.36032 * 119.45463 * 179.97438 * 18 17 16 21 21 C 1.43005 * 116.66479 * 327.21606 * 20 18 17 22 22 C 1.50755 * 109.57369 * 46.34430 * 21 20 18 23 23 O 1.21287 * 120.11193 * 148.68571 * 22 21 20 24 24 N 1.35017 * 119.79470 * 328.66597 * 22 21 20 25 25 H 0.96999 * 120.00430 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47275 * 60.00228 * 9 7 2 27 27 H 1.08996 * 109.46899 * 299.99505 * 9 7 2 28 28 H 1.09003 * 109.46874 * 59.99660 * 10 9 7 29 29 H 1.09002 * 109.47135 * 299.99990 * 10 9 7 30 30 H 0.96996 * 120.00157 * 0.02562 * 11 10 9 31 31 H 1.07999 * 119.97714 * 0.02562 * 15 14 12 32 32 H 1.08004 * 119.99127 * 179.97438 * 16 15 14 33 33 H 1.08004 * 120.12081 * 179.97438 * 19 18 17 34 34 H 1.09002 * 109.45257 * 166.37250 * 21 20 18 35 35 H 1.08997 * 109.45152 * 286.32234 * 21 20 18 36 36 H 0.97009 * 120.46813 * 181.64904 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0981 0.0007 13 8 3.4026 -6.0980 0.0003 14 6 1.4487 -7.3763 0.0008 15 6 0.0515 -7.3770 0.0018 16 6 -0.6381 -8.5702 0.0024 17 6 0.0549 -9.7730 0.0010 18 6 1.4516 -9.7790 0.0004 19 6 2.1470 -8.5873 0.0002 20 8 2.1154 -10.9664 -0.0004 21 6 1.4910 -12.0512 0.6914 22 6 0.0340 -12.1212 0.3106 23 8 -0.5375 -13.1907 0.2850 24 7 -0.6330 -10.9896 -0.0015 25 1 -0.4851 0.8400 0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6044 -0.8895 30 1 0.5428 -4.9308 0.0011 31 1 -0.4886 -6.4418 0.0021 32 1 -1.7181 -8.5695 0.0036 33 1 3.2270 -8.5900 0.0002 34 1 1.9824 -12.9855 0.4201 35 1 1.5780 -11.8942 1.7665 36 1 -1.5765 -11.0204 -0.2248 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273107839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:01 Heat of formation + Delta-G solvation = -84.580666 kcal Electronic energy + Delta-G solvation = -21571.575067 eV Core-core repulsion = 18020.803887 eV Total energy + Delta-G solvation = -3550.771181 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.86984 -39.84763 -38.86369 -37.58970 -35.50804 -34.99026 -32.94159 -31.13420 -30.70395 -29.41876 -28.14248 -25.22162 -24.23017 -23.35414 -21.29105 -21.01636 -19.97999 -19.20303 -18.27063 -17.61354 -16.96065 -16.47880 -16.23795 -15.67871 -15.40006 -15.01617 -14.95387 -14.63137 -14.49273 -14.27331 -13.87416 -13.59855 -13.21555 -13.04962 -12.84243 -12.32497 -11.82405 -11.67092 -11.24363 -11.17557 -11.03933 -10.67707 -10.56390 -10.38463 -9.95314 -9.56812 -9.28481 -9.11193 -8.65860 -8.45598 -8.31124 -6.13196 -4.16017 0.34981 0.89038 1.72233 2.25582 2.73916 2.87353 3.27400 3.33717 3.37337 3.48712 3.57378 3.68770 4.16396 4.38610 4.45466 4.62116 4.64917 4.71070 4.92749 5.01950 5.24232 5.37358 5.55022 5.72049 5.93520 6.04571 6.06821 6.29017 6.30326 6.32115 6.67351 6.79288 6.83698 7.25729 7.46161 7.56024 7.84503 7.88857 8.22691 8.50449 8.89871 9.49130 10.98413 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.046507 B = 0.002565 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.911514 B =10913.378945 C =11467.178489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.714 5.714 12 C 0.550 3.450 13 O -0.543 6.543 14 C -0.116 4.116 15 C -0.073 4.073 16 C -0.129 4.129 17 C 0.111 3.889 18 C 0.066 3.934 19 C -0.048 4.048 20 O -0.298 6.298 21 C 0.050 3.950 22 C 0.492 3.508 23 O -0.511 6.511 24 N -0.657 5.657 25 H 0.262 0.738 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.397 0.603 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.102 0.898 36 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 -21.668 1.228 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.364 5.364 12 C 0.335 3.665 13 O -0.422 6.422 14 C -0.120 4.120 15 C -0.093 4.093 16 C -0.149 4.149 17 C 0.014 3.986 18 C 0.020 3.980 19 C -0.068 4.068 20 O -0.213 6.213 21 C -0.028 4.028 22 C 0.279 3.721 23 O -0.386 6.386 24 N -0.304 5.304 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.232 0.768 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.172 0.828 34 H 0.165 0.835 35 H 0.120 0.880 36 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.904 -22.218 1.184 22.331 hybrid contribution -0.865 0.933 -0.029 1.272 sum -2.769 -21.286 1.155 21.496 Atomic orbital electron populations 1.69943 1.06100 1.26934 1.50340 1.24993 0.94896 0.99439 0.94942 0.86508 0.79849 0.82956 0.78225 1.20543 1.21172 1.19704 1.21043 0.93282 0.90327 1.51418 0.92182 1.19337 0.94212 0.91107 0.97897 1.21798 0.96114 0.81094 1.01118 1.46269 1.10580 1.06445 1.73064 1.18035 0.87289 0.83606 0.77525 1.90776 1.13304 1.87597 1.50492 1.19940 0.93436 0.93671 1.04939 1.21241 0.92960 0.98336 0.96735 1.20561 1.00368 0.89755 1.04233 1.18193 0.90643 0.86441 1.03318 1.18381 0.87884 0.86496 1.05261 1.20586 1.01617 0.87769 0.96833 1.86312 1.46255 1.16704 1.71998 1.23219 0.88586 0.91799 0.99231 1.21610 0.90579 0.83458 0.76483 1.90823 1.69821 1.27669 1.50278 1.43660 1.14122 1.05379 1.67232 0.92814 0.95883 0.95866 0.92231 0.92224 0.76803 0.84071 0.84155 0.82836 0.83525 0.88024 0.74297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -14.07 9.11 -34.44 -0.31 -14.39 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.44 5.61 -4.04 -0.02 2.42 16 11 N -0.71 -11.62 5.50 -61.32 -0.34 -11.96 16 12 C 0.55 8.87 7.76 -12.44 -0.10 8.78 16 13 O -0.54 -10.70 16.34 5.29 0.09 -10.61 16 14 C -0.12 -1.42 5.88 -104.94 -0.62 -2.04 16 15 C -0.07 -0.69 9.53 -39.18 -0.37 -1.06 16 16 C -0.13 -1.00 9.92 -39.52 -0.39 -1.40 16 17 C 0.11 0.98 6.55 -83.50 -0.55 0.43 16 18 C 0.07 0.68 6.43 -39.14 -0.25 0.43 16 19 C -0.05 -0.56 9.53 -39.10 -0.37 -0.94 16 20 O -0.30 -2.86 10.45 -19.84 -0.21 -3.07 16 21 C 0.05 0.34 7.17 36.03 0.26 0.60 16 22 C 0.49 4.43 7.93 -10.85 -0.09 4.35 16 23 O -0.51 -6.09 17.95 5.55 0.10 -5.99 16 24 N -0.66 -5.17 5.45 -9.65 -0.05 -5.22 16 25 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.40 5.39 6.49 -40.82 -0.26 5.13 16 31 H 0.14 1.11 6.38 -52.49 -0.34 0.77 16 32 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 33 H 0.15 1.86 7.65 -52.48 -0.40 1.46 16 34 H 0.15 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.42 2.49 8.88 -40.82 -0.36 2.12 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -33.36 318.16 -6.82 -40.18 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.86 Total: 1.87 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.05 Total: -1.16 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.35 Total: -41.95 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.02 Total: -19.67 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.36 -6.82 -40.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273107839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.398 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds