Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48500 * 109.46568 * 239.99709 * 3 2 1 5 5 H 1.48492 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47140 * 119.99777 * 3 2 1 7 7 C 1.37876 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99808 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46830 * 179.97438 * 9 7 2 11 11 C 1.46953 * 110.99781 * 170.00081 * 10 9 7 12 12 C 1.53253 * 109.72089 * 164.31305 * 11 10 9 13 13 N 1.47106 * 108.39581 * 50.64305 * 12 11 10 14 14 C 1.38136 * 122.84221 * 343.18054 * 13 12 11 15 15 C 1.34164 * 110.05674 * 179.85315 * 14 13 12 16 16 C 1.45345 * 106.86340 * 359.97438 * 15 14 13 17 17 C 1.36176 * 127.62267 * 162.96713 * 13 12 11 18 18 C 1.39383 * 132.10953 * 0.13636 * 17 13 12 19 19 C 1.38393 * 117.08864 * 180.02562 * 18 17 13 20 20 C 1.38493 * 122.31995 * 359.94440 * 19 18 17 21 21 C 1.38451 * 121.87749 * 0.05050 * 20 19 18 22 22 Cl 1.73606 * 121.64449 * 179.97438 * 21 20 19 23 23 C 1.47263 * 111.00069 * 45.96911 * 10 9 7 24 24 H 0.96999 * 120.00127 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47062 * 59.99815 * 9 7 2 26 26 H 1.08997 * 109.47190 * 299.99685 * 9 7 2 27 27 H 1.09000 * 109.42760 * 44.23603 * 11 10 9 28 28 H 1.09001 * 109.42888 * 284.38905 * 11 10 9 29 29 H 1.09002 * 109.68628 * 170.38133 * 12 11 10 30 30 H 1.09002 * 109.68397 * 290.90752 * 12 11 10 31 31 H 1.08008 * 126.57092 * 179.97438 * 15 14 13 32 32 H 1.08001 * 121.44887 * 0.02562 * 18 17 13 33 33 H 1.08000 * 118.83837 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.06334 * 180.02562 * 20 19 18 35 35 H 1.08996 * 109.72455 * 294.04440 * 23 10 9 36 36 H 1.09003 * 109.72193 * 54.65984 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5210 -4.8940 0.2388 12 6 2.4437 -6.0548 -0.1480 13 7 3.7449 -5.8518 0.5075 14 6 4.1365 -4.6366 1.0349 15 6 5.3618 -4.7412 1.5713 16 6 5.7906 -6.1165 1.3781 17 6 4.7304 -6.7712 0.7016 18 6 4.8299 -8.1200 0.3646 19 6 5.9971 -8.7737 0.7187 20 6 7.0333 -8.1339 1.3783 21 6 6.9629 -6.7955 1.7257 22 17 8.2651 -5.9996 2.5531 23 6 3.2749 -3.3958 0.9890 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5568 0.8903 27 1 0.6130 -4.9366 -0.3629 28 1 1.2599 -4.9743 1.2940 29 1 2.0079 -6.9969 0.1849 30 1 2.5765 -6.0736 -1.2297 31 1 5.9223 -3.9543 2.0541 32 1 4.0308 -8.6325 -0.1505 33 1 6.1040 -9.8196 0.4716 34 1 7.9213 -8.6949 1.6292 35 1 3.8795 -2.5388 0.6924 36 1 2.8369 -3.2148 1.9706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278030631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = 61.558068 kcal Electronic energy + Delta-G solvation = -20225.400115 eV Core-core repulsion = 17121.675150 eV Total energy + Delta-G solvation = -3103.724965 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40033 -37.99173 -36.52148 -35.70337 -33.41432 -32.52524 -30.46439 -29.63943 -28.06461 -26.44939 -25.50475 -22.73061 -21.79024 -21.75123 -20.60328 -18.86681 -17.18847 -16.65447 -16.11481 -15.64085 -15.21332 -14.86129 -14.55538 -14.34856 -13.95281 -13.75921 -13.62088 -12.92740 -12.81439 -12.53342 -12.09733 -11.84911 -11.76637 -11.56856 -11.39082 -11.24264 -10.99581 -10.83337 -10.80093 -10.66631 -10.61904 -9.97321 -9.38471 -9.25355 -8.60521 -7.97661 -7.61456 -7.34359 -6.16916 -4.20438 0.98620 1.60984 2.19238 2.87831 2.94397 3.27032 3.31578 3.34274 3.80235 4.30148 4.55253 4.75456 4.82383 4.86553 5.06466 5.08730 5.20794 5.28217 5.36683 5.41070 5.60146 5.68909 5.83185 5.92377 5.96983 6.06716 6.17989 6.29292 6.39306 6.43192 6.69197 6.89153 7.03092 7.18356 7.29069 7.44003 7.57403 7.79575 7.95916 8.30257 8.85522 9.45627 10.94047 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.004113 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.692970 B = 6806.711652 C = 7970.028400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.067 0.933 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.038 3.962 12 C 0.119 3.881 13 N -0.472 5.472 14 C 0.106 3.894 15 C -0.208 4.208 16 C -0.100 4.100 17 C 0.114 3.886 18 C -0.126 4.126 19 C -0.100 4.100 20 C -0.147 4.147 21 C 0.011 3.989 22 Cl -0.067 7.067 23 C 0.121 3.879 24 H 0.264 0.736 25 H 0.038 0.962 26 H -0.004 1.004 27 H 0.092 0.908 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.129 -15.873 2.474 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.085 0.915 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.091 4.091 12 C -0.002 4.002 13 N -0.155 5.155 14 C -0.002 4.002 15 C -0.232 4.232 16 C -0.106 4.106 17 C 0.005 3.995 18 C -0.147 4.147 19 C -0.120 4.120 20 C -0.168 4.168 21 C -0.016 4.016 22 Cl -0.038 7.038 23 C -0.007 4.007 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.167 0.833 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.940 -15.717 1.911 18.182 hybrid contribution 0.068 0.979 0.779 1.253 sum 9.008 -14.738 2.690 17.481 Atomic orbital electron populations 1.69935 1.06135 1.27222 1.49993 1.24972 0.94860 0.99439 0.94850 0.86548 0.79508 0.82519 0.78854 1.20007 1.21231 1.20043 1.21198 0.93471 0.90000 1.51723 0.91505 1.19787 0.90099 0.86582 0.96587 1.62370 1.13948 1.02568 1.47490 1.22324 0.96469 0.90394 0.99915 1.22118 0.80743 0.99297 0.98079 1.44150 1.14549 1.07896 1.48861 1.21360 0.95384 0.87093 0.96322 1.21055 0.96029 0.95390 1.10720 1.18843 0.93267 0.94703 1.03766 1.18155 0.88982 0.91190 1.01185 1.20422 0.99175 0.90841 1.04237 1.20606 0.92584 0.99538 0.99256 1.20665 1.00262 0.92650 1.03187 1.20322 0.88903 0.92674 0.99662 1.98342 1.47933 1.80527 1.77020 1.21081 0.92518 0.91951 0.95167 0.92639 0.94449 0.98654 0.88974 0.94518 0.90095 0.89803 0.83321 0.85373 0.85690 0.85849 0.86841 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.53 -13.85 8.51 -34.44 -0.29 -14.14 16 8 H 0.07 1.71 5.79 -52.49 -0.30 1.41 16 9 C 0.19 4.70 4.95 -4.97 -0.02 4.68 16 10 N -0.54 -10.83 4.80 -236.73 -1.14 -11.97 16 11 C 0.04 0.62 5.49 -3.66 -0.02 0.60 16 12 C 0.12 1.62 7.15 -3.58 -0.03 1.60 16 13 N -0.47 -7.51 3.19 -108.76 -0.35 -7.86 16 14 C 0.11 1.84 6.62 -80.97 -0.54 1.30 16 15 C -0.21 -3.43 10.86 -38.19 -0.41 -3.85 16 16 C -0.10 -1.58 6.17 -105.11 -0.65 -2.23 16 17 C 0.11 1.73 6.83 -84.16 -0.57 1.15 16 18 C -0.13 -1.54 10.21 -39.10 -0.40 -1.94 16 19 C -0.10 -1.10 9.92 -39.43 -0.39 -1.49 16 20 C -0.15 -1.76 9.80 -39.41 -0.39 -2.15 16 21 C 0.01 0.16 6.43 -38.90 -0.25 -0.09 16 22 Cl -0.07 -0.87 29.00 -51.86 -1.50 -2.37 16 23 C 0.12 2.30 5.10 -4.57 -0.02 2.28 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.00 -0.11 8.08 -51.93 -0.42 -0.53 16 27 H 0.09 1.38 8.00 -51.93 -0.42 0.96 16 28 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.15 2.26 8.06 -52.48 -0.42 1.83 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.11 2.27 6.08 -51.93 -0.32 1.95 16 36 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 LS Contribution 313.74 15.07 4.73 4.73 Total: -1.00 -28.93 313.74 -11.02 -39.95 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.39 Total: -0.81 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -4.08 Total: -12.73 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.75 Total: -44.52 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.93 -11.02 -39.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278030631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.509 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds