Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99958 * 2 1 4 4 H 1.48500 * 109.46568 * 239.99709 * 3 2 1 5 5 H 1.48492 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47140 * 119.99777 * 3 2 1 7 7 C 1.37876 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00217 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99808 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46830 * 179.97438 * 9 7 2 11 11 C 1.46953 * 110.99781 * 170.00081 * 10 9 7 12 12 C 1.53253 * 109.72089 * 164.31305 * 11 10 9 13 13 N 1.47106 * 108.39581 * 50.64305 * 12 11 10 14 14 C 1.38136 * 122.84221 * 343.18054 * 13 12 11 15 15 C 1.34164 * 110.05674 * 179.85315 * 14 13 12 16 16 C 1.45345 * 106.86340 * 359.97438 * 15 14 13 17 17 C 1.36176 * 127.62267 * 162.96713 * 13 12 11 18 18 C 1.39383 * 132.10953 * 0.13636 * 17 13 12 19 19 C 1.38393 * 117.08864 * 180.02562 * 18 17 13 20 20 C 1.38493 * 122.31995 * 359.94440 * 19 18 17 21 21 C 1.38451 * 121.87749 * 0.05050 * 20 19 18 22 22 Cl 1.73606 * 121.64449 * 179.97438 * 21 20 19 23 23 C 1.47263 * 111.00069 * 45.96911 * 10 9 7 24 24 H 0.96999 * 120.00127 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47062 * 59.99815 * 9 7 2 26 26 H 1.08997 * 109.47190 * 299.99685 * 9 7 2 27 27 H 1.09000 * 109.42760 * 44.23603 * 11 10 9 28 28 H 1.09001 * 109.42888 * 284.38905 * 11 10 9 29 29 H 1.09002 * 109.68628 * 170.38133 * 12 11 10 30 30 H 1.09002 * 109.68397 * 290.90752 * 12 11 10 31 31 H 1.08008 * 126.57092 * 179.97438 * 15 14 13 32 32 H 1.08001 * 121.44887 * 0.02562 * 18 17 13 33 33 H 1.08000 * 118.83837 * 179.97438 * 19 18 17 34 34 H 1.07999 * 119.06334 * 180.02562 * 20 19 18 35 35 H 1.08996 * 109.72455 * 294.04440 * 23 10 9 36 36 H 1.09003 * 109.72193 * 54.65984 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5210 -4.8940 0.2388 12 6 2.4437 -6.0548 -0.1480 13 7 3.7449 -5.8518 0.5075 14 6 4.1365 -4.6366 1.0349 15 6 5.3618 -4.7412 1.5713 16 6 5.7906 -6.1165 1.3781 17 6 4.7304 -6.7712 0.7016 18 6 4.8299 -8.1200 0.3646 19 6 5.9971 -8.7737 0.7187 20 6 7.0333 -8.1339 1.3783 21 6 6.9629 -6.7955 1.7257 22 17 8.2651 -5.9996 2.5531 23 6 3.2749 -3.3958 0.9890 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5568 0.8903 27 1 0.6130 -4.9366 -0.3629 28 1 1.2599 -4.9743 1.2940 29 1 2.0079 -6.9969 0.1849 30 1 2.5765 -6.0736 -1.2297 31 1 5.9223 -3.9543 2.0541 32 1 4.0308 -8.6325 -0.1505 33 1 6.1040 -9.8196 0.4716 34 1 7.9213 -8.6949 1.6292 35 1 3.8795 -2.5388 0.6924 36 1 2.8369 -3.2148 1.9706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278030631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = 45.722212 kcal Electronic energy + Delta-G solvation = -20226.086809 eV Core-core repulsion = 17121.675150 eV Total energy + Delta-G solvation = -3104.411659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54581 -39.24218 -37.68606 -36.86889 -34.95061 -34.17806 -31.60489 -30.94926 -29.44391 -27.96769 -26.95511 -24.31571 -22.96954 -22.87133 -22.02419 -20.08918 -18.69966 -18.12970 -17.41070 -16.93124 -16.58150 -16.24104 -15.73440 -15.72921 -15.31746 -15.16767 -14.95416 -14.19851 -14.05445 -13.95289 -13.59820 -13.39257 -12.98135 -12.87663 -12.74993 -12.69767 -12.49814 -12.35399 -12.20122 -11.86278 -11.79572 -11.67396 -11.21174 -10.67512 -10.46047 -9.29506 -8.99424 -8.52280 -8.25269 -6.35322 -0.04352 0.61350 1.19198 1.41811 1.43557 1.51288 1.65219 1.80904 2.38126 2.79948 3.02881 3.11421 3.58732 3.65005 3.77273 4.09024 4.10603 4.16731 4.26723 4.39376 4.43165 4.54605 4.58867 4.69276 4.78085 4.79014 4.93552 5.01146 5.10232 5.27542 5.37894 5.49079 5.57213 5.67577 5.75496 5.90821 6.07176 6.10158 6.37523 6.47909 6.79503 7.35295 8.86246 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.004113 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.692970 B = 6806.711652 C = 7970.028400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.209 3.791 10 N -0.545 5.545 11 C 0.036 3.964 12 C 0.124 3.876 13 N -0.477 5.477 14 C 0.081 3.919 15 C -0.211 4.211 16 C -0.128 4.128 17 C 0.100 3.900 18 C -0.125 4.125 19 C -0.089 4.089 20 C -0.143 4.143 21 C -0.005 4.005 22 Cl -0.066 7.066 23 C 0.131 3.869 24 H 0.266 0.734 25 H 0.015 0.985 26 H -0.029 1.029 27 H 0.101 0.899 28 H 0.033 0.967 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.148 0.852 35 H 0.095 0.905 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.553 -18.352 2.093 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.087 0.913 9 C 0.083 3.917 10 N -0.270 5.270 11 C -0.093 4.093 12 C 0.004 3.996 13 N -0.160 5.160 14 C -0.027 4.027 15 C -0.235 4.235 16 C -0.134 4.134 17 C -0.009 4.009 18 C -0.145 4.145 19 C -0.108 4.108 20 C -0.163 4.163 21 C -0.032 4.032 22 Cl -0.037 7.037 23 C 0.002 3.998 24 H 0.074 0.926 25 H 0.033 0.967 26 H -0.011 1.011 27 H 0.120 0.880 28 H 0.051 0.949 29 H 0.137 0.863 30 H 0.109 0.891 31 H 0.167 0.833 32 H 0.175 0.825 33 H 0.183 0.817 34 H 0.166 0.834 35 H 0.113 0.887 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.378 -18.225 1.530 21.028 hybrid contribution -0.302 1.588 0.914 1.857 sum 10.076 -16.637 2.444 19.603 Atomic orbital electron populations 1.70053 1.07642 1.28102 1.51136 1.25825 0.95650 1.02980 0.94453 0.85518 0.78281 0.78228 0.79158 1.19437 1.20849 1.19173 1.21569 0.93859 0.91128 1.51125 0.91256 1.19415 0.90142 0.87881 0.94234 1.62232 1.13514 1.02938 1.48325 1.22435 0.97451 0.89365 1.00001 1.22201 0.79564 0.99360 0.98458 1.44216 1.15339 1.07438 1.49021 1.21002 0.95714 0.87252 0.98738 1.21200 0.95809 0.96361 1.10148 1.19031 0.94647 0.94397 1.05327 1.18552 0.88482 0.92262 1.01567 1.20877 1.00467 0.89490 1.03701 1.21112 0.91313 1.01223 0.97141 1.21086 1.01451 0.91813 1.01979 1.20552 0.88685 0.93623 1.00379 1.98338 1.47625 1.80735 1.77012 1.20802 0.92122 0.92830 0.94013 0.92558 0.96675 1.01143 0.88029 0.94906 0.86316 0.89081 0.83279 0.82461 0.81700 0.83418 0.88679 0.93951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.26 13.29 21.45 0.28 -53.97 16 2 C 0.01 0.55 5.46 84.65 0.46 1.02 16 3 Si 0.96 43.20 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -29.32 8.51 25.60 0.22 -29.10 16 8 H 0.07 3.66 5.79 -2.91 -0.02 3.65 16 9 C 0.21 10.61 4.95 85.56 0.42 11.04 16 10 N -0.55 -22.65 4.80 -902.86 -4.34 -26.99 16 11 C 0.04 1.16 5.49 86.38 0.47 1.64 16 12 C 0.12 3.17 7.15 86.35 0.62 3.78 16 13 N -0.48 -14.66 3.19 -498.01 -1.59 -16.24 16 14 C 0.08 2.85 6.62 40.77 0.27 3.12 16 15 C -0.21 -7.08 10.86 23.17 0.25 -6.83 16 16 C -0.13 -3.94 6.17 -20.18 -0.12 -4.07 16 17 C 0.10 2.82 6.83 39.62 0.27 3.09 16 18 C -0.12 -2.54 10.21 22.58 0.23 -2.31 16 19 C -0.09 -1.53 9.92 22.37 0.22 -1.31 16 20 C -0.14 -2.92 9.80 22.38 0.22 -2.70 16 21 C -0.01 -0.14 6.43 22.71 0.15 0.01 16 22 Cl -0.07 -1.63 29.00 -2.72 -0.08 -1.71 16 23 C 0.13 5.21 5.10 85.62 0.44 5.64 16 24 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 26 H -0.03 -1.59 8.08 -2.39 -0.02 -1.61 16 27 H 0.10 3.03 8.00 -2.39 -0.02 3.01 16 28 H 0.03 1.08 8.06 -2.39 -0.02 1.06 16 29 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.15 4.73 8.06 -2.91 -0.02 4.70 16 32 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 34 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 35 H 0.10 4.03 6.08 -2.39 -0.01 4.02 16 36 H 0.04 1.76 8.13 -2.39 -0.02 1.74 16 Total: -1.00 -64.25 313.74 1.51 -62.74 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.09 Total: 7.94 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 4.12 Total: -16.99 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -5.64 Total: -97.20 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.71 kcal Total: -64.25 1.51 -62.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278030631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.460 kcal (2) G-P(sol) polarization free energy of solvation -64.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds