Wall clock time and date at job start Tue Mar 31 2020 08:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38348 * 127.15357 * 2 1 4 4 C 1.39772 * 126.56236 * 359.97438 * 3 2 1 5 5 H 1.07994 * 120.00476 * 0.02562 * 4 3 2 6 6 C 1.40084 * 120.00095 * 180.02562 * 4 3 2 7 7 N 1.30822 * 119.99533 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00516 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47364 * 89.99652 * 8 6 4 10 10 H 1.48503 * 109.47529 * 210.00137 * 8 6 4 11 11 H 1.48504 * 109.46784 * 330.00073 * 8 6 4 12 12 N 1.33094 * 106.86984 * 180.02562 * 3 2 1 13 13 N 1.28510 * 109.75082 * 0.02562 * 12 3 2 14 14 C 1.32394 * 110.20307 * 359.97438 * 13 12 3 15 15 S 1.76197 * 126.25806 * 179.74108 * 14 13 12 16 16 C 1.80990 * 100.00311 * 0.02562 * 15 14 13 17 17 C 1.52998 * 109.47183 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.46909 * 180.02562 * 17 16 15 19 19 C 1.38677 * 120.41870 * 269.71686 * 18 17 16 20 20 C 1.38623 * 118.41862 * 179.78313 * 19 18 17 21 21 C 1.38230 * 119.16222 * 0.52320 * 20 19 18 22 22 N 1.31847 * 120.76252 * 359.71666 * 21 20 19 23 23 C 1.31883 * 121.72990 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47319 * 269.99882 * 1 2 3 25 25 H 1.09004 * 109.46984 * 30.00332 * 1 2 3 26 26 H 1.08997 * 109.47118 * 150.00118 * 1 2 3 27 27 H 0.97002 * 119.99448 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47247 * 300.00472 * 16 15 14 29 29 H 1.09006 * 109.47195 * 60.00128 * 16 15 14 30 30 H 1.08998 * 109.47460 * 300.00397 * 17 16 15 31 31 H 1.09001 * 109.47250 * 60.00652 * 17 16 15 32 32 H 1.07999 * 120.79114 * 0.03255 * 19 18 17 33 33 H 1.08003 * 120.41968 * 180.22288 * 20 19 18 34 34 H 1.08001 * 119.61824 * 179.75181 * 21 20 19 35 35 H 1.07999 * 119.62424 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9086 2.4443 -0.0005 5 1 0.8595 2.7005 -0.0005 6 6 2.8767 3.4568 -0.0010 7 7 4.1476 3.1465 -0.0014 8 14 2.3531 5.2498 -0.0009 9 1 2.2148 5.7252 1.3992 10 1 3.3779 6.0649 -0.7015 11 1 1.0501 5.3850 -0.7005 12 7 3.5490 0.6413 -0.0006 13 7 3.5370 -0.6438 -0.0015 14 6 2.2903 -1.0894 -0.0010 15 16 1.7873 -2.7780 -0.0082 16 6 3.4058 -3.5882 -0.0149 17 6 3.2161 -5.1064 -0.0213 18 6 4.5638 -5.7809 -0.0263 19 6 5.1872 -6.0952 -1.2244 20 6 6.4283 -6.7111 -1.1806 21 6 6.9943 -6.9994 0.0471 22 7 6.3701 -6.6904 1.1666 23 6 5.1910 -6.0996 1.1631 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 4.8179 3.8477 -0.0022 28 1 3.9591 -3.2870 -0.9044 29 1 3.9622 -3.2956 0.8755 30 1 2.6629 -5.4072 0.8684 31 1 2.6596 -5.3993 -0.9116 32 1 4.7188 -5.8620 -2.1692 33 1 6.9444 -6.9669 -2.0942 34 1 7.9591 -7.4828 0.0898 35 1 4.7100 -5.8622 2.1004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279937977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:46 Heat of formation + Delta-G solvation = 93.626080 kcal Electronic energy + Delta-G solvation = -19264.999705 eV Core-core repulsion = 16197.001771 eV Total energy + Delta-G solvation = -3067.997934 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.51893 -40.25899 -34.84213 -33.70858 -33.32295 -32.15440 -29.83272 -29.29108 -26.54140 -25.64535 -24.38424 -23.66768 -21.63459 -20.81958 -20.32138 -17.37711 -17.20347 -16.53832 -16.25462 -15.64787 -15.34509 -14.81113 -14.47336 -14.17239 -14.06024 -13.90304 -13.36280 -13.16985 -12.83765 -12.47629 -12.34179 -12.25134 -11.75089 -11.38863 -11.32726 -11.20241 -10.95068 -10.40326 -10.24451 -9.89531 -9.73655 -9.63328 -9.53240 -9.06796 -8.71972 -8.45003 -8.39626 -6.86931 -6.66447 -4.59349 0.96959 1.16959 2.04216 2.79184 2.90399 3.05152 3.08712 3.34575 3.70302 3.85810 4.21931 4.34865 4.40954 4.66656 4.71961 4.86494 4.90049 5.08464 5.14987 5.30952 5.41680 5.53276 5.55106 5.70376 5.80953 5.87127 5.98767 6.02532 6.18403 6.20202 6.58841 6.75335 6.87248 7.22564 7.46928 7.86567 7.87420 8.16045 8.68489 8.84157 10.26083 10.62313 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026862 B = 0.003249 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.105743 B = 8617.233282 C = 9355.735394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.516 5.516 3 C 0.347 3.653 4 C -0.447 4.447 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.736 5.736 8 Si 0.921 3.079 9 H -0.268 1.268 10 H -0.275 1.275 11 H -0.262 1.262 12 N -0.334 5.334 13 N -0.285 5.285 14 C 0.046 3.954 15 S -0.059 6.059 16 C -0.085 4.085 17 C -0.062 4.062 18 C -0.124 4.124 19 C -0.070 4.070 20 C -0.172 4.172 21 C 0.090 3.910 22 N -0.485 5.485 23 C 0.105 3.895 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.279 0.721 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.153 0.847 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.450 -14.482 -1.920 14.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.102 3.898 4 C -0.487 4.487 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.360 5.360 8 Si 0.745 3.255 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.186 1.186 12 N -0.181 5.181 13 N -0.131 5.131 14 C -0.326 4.326 15 S 0.169 5.831 16 C -0.234 4.234 17 C -0.101 4.101 18 C -0.127 4.127 19 C -0.096 4.096 20 C -0.191 4.191 21 C -0.067 4.067 22 N -0.193 5.193 23 C -0.052 4.052 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.171 0.829 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.376 -15.115 -1.121 15.219 hybrid contribution -0.832 1.823 -0.870 2.185 sum -2.209 -13.292 -1.991 13.620 Atomic orbital electron populations 1.21490 0.78528 1.02675 1.01625 1.46038 1.06082 1.05324 1.64373 1.21623 0.84764 0.88425 0.94970 1.18107 0.94706 0.86450 1.49478 0.89776 1.25807 0.94339 1.01330 0.93300 1.70017 1.00723 1.35023 1.30262 0.86112 0.79392 0.80785 0.79208 1.19348 1.19973 1.18649 1.75462 1.15300 0.97836 1.29518 1.74543 1.15188 1.07610 1.15743 1.25269 0.91522 0.92488 1.23279 1.84276 1.10922 0.92159 1.95761 1.23269 0.97738 0.95229 1.07209 1.20293 0.93200 0.92326 1.04289 1.20802 0.97922 0.99631 0.94377 1.21554 0.94548 0.95137 0.98360 1.22141 0.96534 1.00778 0.99680 1.22753 0.99343 0.96686 0.87877 1.67689 1.08919 1.11332 1.31344 1.22730 0.90864 0.93888 0.97740 0.92554 0.90378 0.91541 0.90958 0.89132 0.89001 0.89689 0.89877 0.84688 0.84821 0.82939 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 10.88 59.85 0.65 2.50 16 2 N -0.52 -12.51 3.26 -123.18 -0.40 -12.91 16 3 C 0.35 9.74 7.53 -154.82 -1.17 8.58 16 4 C -0.45 -11.88 9.05 -38.32 -0.35 -12.22 16 5 H 0.08 2.02 7.30 -52.49 -0.38 1.63 16 6 C 0.08 1.99 5.50 -17.29 -0.10 1.90 16 7 N -0.74 -20.33 11.94 55.56 0.66 -19.67 16 8 Si 0.92 18.52 29.56 -169.99 -5.03 13.49 16 9 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 10 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 11 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 12 N -0.33 -10.12 10.48 31.26 0.33 -9.80 16 13 N -0.28 -7.88 11.62 30.89 0.36 -7.52 16 14 C 0.05 1.11 8.09 -87.27 -0.71 0.40 16 15 S -0.06 -1.03 21.78 -107.50 -2.34 -3.37 16 16 C -0.09 -1.30 5.20 37.16 0.19 -1.11 16 17 C -0.06 -0.68 5.37 -27.88 -0.15 -0.83 16 18 C -0.12 -1.40 5.15 -104.48 -0.54 -1.94 16 19 C -0.07 -0.72 9.86 -39.28 -0.39 -1.11 16 20 C -0.17 -1.64 10.11 -39.44 -0.40 -2.03 16 21 C 0.09 0.95 11.18 -17.55 -0.20 0.76 16 22 N -0.48 -6.21 10.36 -13.25 -0.14 -6.34 16 23 C 0.10 1.26 10.86 -17.55 -0.19 1.07 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.08 1.33 7.53 -51.93 -0.39 0.94 16 26 H 0.07 1.06 7.84 -51.93 -0.41 0.65 16 27 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 28 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 29 H 0.09 1.55 8.14 -51.91 -0.42 1.12 16 30 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 31 H 0.08 0.82 8.09 -51.93 -0.42 0.39 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -34.22 322.90 -9.13 -43.36 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -4.12 Total: 1.93 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -3.33 Total: -4.03 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.81 Total: -56.24 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -2.34 Total: -3.37 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.22 -9.13 -43.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279937977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.981 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds