Wall clock time and date at job start Tue Mar 31 2020 08:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38355 * 127.14885 * 2 1 4 4 C 1.39768 * 126.56967 * 0.02562 * 3 2 1 5 5 H 1.08000 * 120.00087 * 0.30606 * 4 3 2 6 6 C 1.40086 * 120.00352 * 180.30880 * 4 3 2 7 7 N 1.30815 * 119.99678 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47032 * 90.00049 * 8 6 4 10 10 H 1.48503 * 109.46910 * 209.99879 * 8 6 4 11 11 H 1.48500 * 109.47180 * 329.99952 * 8 6 4 12 12 N 1.33102 * 106.86583 * 180.29520 * 3 2 1 13 13 N 1.28518 * 109.74814 * 359.74362 * 12 3 2 14 14 C 1.32384 * 110.19998 * 0.02562 * 13 12 3 15 15 S 1.76201 * 126.25534 * 180.02562 * 14 13 12 16 16 C 1.81001 * 100.00100 * 0.02562 * 15 14 13 17 17 C 1.52997 * 109.47204 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47179 * 179.97438 * 17 16 15 19 19 C 1.38655 * 120.78688 * 90.00152 * 18 17 16 20 20 C 1.38199 * 119.16350 * 179.97438 * 19 18 17 21 21 N 1.31871 * 120.76379 * 0.02562 * 20 19 18 22 22 C 1.31870 * 121.72518 * 359.94860 * 21 20 19 23 23 C 1.38199 * 120.76682 * 0.05382 * 22 21 20 24 24 H 1.09000 * 109.46858 * 270.15651 * 1 2 3 25 25 H 1.09007 * 109.47238 * 30.15700 * 1 2 3 26 26 H 1.09004 * 109.47147 * 150.15731 * 1 2 3 27 27 H 0.96993 * 119.99398 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47136 * 59.99750 * 16 15 14 29 29 H 1.08997 * 109.46925 * 299.99892 * 16 15 14 30 30 H 1.09008 * 109.46932 * 59.99890 * 17 16 15 31 31 H 1.09001 * 109.47617 * 300.00006 * 17 16 15 32 32 H 1.08004 * 120.41704 * 359.70754 * 19 18 17 33 33 H 1.08003 * 119.62207 * 180.02562 * 20 19 18 34 34 H 1.08006 * 119.61530 * 180.02562 * 22 21 20 35 35 H 1.07998 * 120.42552 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3005 1.1028 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8595 2.7006 0.0059 6 6 2.8767 3.4569 -0.0061 7 7 4.1475 3.1467 -0.0122 8 14 2.3529 5.2500 -0.0062 9 1 2.2214 5.7273 1.3939 10 1 3.3743 6.0640 -0.7128 11 1 1.0466 5.3841 -0.6996 12 7 3.5490 0.6414 -0.0066 13 7 3.5370 -0.6437 -0.0051 14 6 2.2904 -1.0892 0.0019 15 16 1.7873 -2.7779 0.0070 16 6 3.4059 -3.5881 0.0008 17 6 3.2163 -5.1063 0.0048 18 6 4.5639 -5.7808 -0.0009 19 6 5.2048 -6.0962 1.1875 20 6 6.4396 -6.7151 1.1430 21 7 7.0078 -7.0048 -0.0112 22 6 6.4274 -6.7201 -1.1606 23 6 5.1921 -6.1013 -1.1947 24 1 -0.3633 0.0028 1.0277 25 1 -0.3634 0.8886 -0.5163 26 1 -0.3634 -0.8914 -0.5114 27 1 4.8178 3.8478 -0.0172 28 1 3.9649 -3.2898 0.8877 29 1 3.9566 -3.2927 -0.8922 30 1 2.6570 -5.4049 -0.8819 31 1 2.6657 -5.4014 0.8981 32 1 4.7467 -5.8572 2.1359 33 1 6.9453 -6.9644 2.0642 34 1 6.9234 -6.9731 -2.0861 35 1 4.7220 -5.8703 -2.1391 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279967738.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:51 Heat of formation + Delta-G solvation = 93.423496 kcal Electronic energy + Delta-G solvation = -19258.600147 eV Core-core repulsion = 16190.593429 eV Total energy + Delta-G solvation = -3068.006719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.53401 -40.23789 -35.08393 -33.72250 -33.34081 -31.29542 -30.46211 -29.33749 -26.56243 -25.68111 -24.50971 -23.55920 -21.65197 -20.83716 -20.34626 -17.39092 -16.82629 -16.53429 -16.22416 -15.71564 -15.45299 -14.84060 -14.57218 -14.31310 -14.05791 -13.84251 -13.65646 -13.35274 -12.59492 -12.36435 -12.35046 -12.09913 -11.94868 -11.37267 -11.33398 -11.17747 -10.96448 -10.41542 -10.27697 -9.75595 -9.64784 -9.64545 -9.56645 -9.25114 -8.73581 -8.46675 -8.41284 -6.89052 -6.67578 -4.60700 1.04113 1.10401 2.02041 2.76307 2.89453 3.04433 3.08035 3.33183 3.71609 3.84822 4.20500 4.36388 4.39589 4.58954 4.60288 4.97191 5.02789 5.04867 5.12042 5.29648 5.43842 5.51981 5.62223 5.64032 5.76060 5.85724 5.90052 6.01213 6.14433 6.26547 6.60187 6.73737 6.85982 7.21304 7.45437 7.85864 7.86926 8.14810 8.67263 8.82761 10.24942 10.60682 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.026774 B = 0.003241 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.530931 B = 8636.371172 C = 9377.910726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.516 5.516 3 C 0.347 3.653 4 C -0.447 4.447 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.736 5.736 8 Si 0.921 3.079 9 H -0.268 1.268 10 H -0.275 1.275 11 H -0.262 1.262 12 N -0.334 5.334 13 N -0.285 5.285 14 C 0.046 3.954 15 S -0.058 6.058 16 C -0.084 4.084 17 C -0.068 4.068 18 C -0.029 4.029 19 C -0.167 4.167 20 C 0.098 3.902 21 N -0.492 5.492 22 C 0.098 3.902 23 C -0.167 4.167 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.280 0.720 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -13.938 -0.049 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.218 5.218 3 C 0.102 3.898 4 C -0.487 4.487 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.360 5.360 8 Si 0.745 3.255 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.186 1.186 12 N -0.181 5.181 13 N -0.131 5.131 14 C -0.326 4.326 15 S 0.170 5.830 16 C -0.234 4.234 17 C -0.107 4.107 18 C -0.038 4.038 19 C -0.187 4.187 20 C -0.059 4.059 21 N -0.201 5.201 22 C -0.059 4.059 23 C -0.187 4.187 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.901 -14.777 -0.063 14.899 hybrid contribution -1.319 2.052 0.021 2.439 sum -3.220 -12.726 -0.042 13.127 Atomic orbital electron populations 1.21493 0.78519 1.02690 1.01622 1.46035 1.06084 1.05313 1.64387 1.21627 0.84757 0.88423 0.94951 1.18111 0.94718 0.86446 1.49451 0.89766 1.25809 0.94336 1.01339 0.93290 1.70010 1.00730 1.35047 1.30208 0.86111 0.79412 0.80770 0.79206 1.19346 1.19958 1.18640 1.75469 1.15294 0.97813 1.29533 1.74543 1.15175 1.07630 1.15715 1.25250 0.91539 0.92460 1.23365 1.84279 1.10741 0.92200 1.95778 1.23228 0.97894 0.94977 1.07297 1.20405 0.93298 0.92587 1.04430 1.20206 0.95936 0.94476 0.93231 1.22105 0.96990 1.00603 0.98963 1.22746 0.92378 0.94548 0.96212 1.67661 1.35361 1.18430 0.98627 1.22745 0.92279 0.94558 0.96303 1.22103 0.97074 1.00593 0.98889 0.92565 0.90358 0.91535 0.90939 0.88985 0.88988 0.89631 0.89616 0.84620 0.82808 0.82808 0.84624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 10.87 59.85 0.65 2.49 16 2 N -0.52 -12.45 3.26 -123.18 -0.40 -12.85 16 3 C 0.35 9.71 7.53 -154.81 -1.17 8.54 16 4 C -0.45 -11.83 9.04 -38.32 -0.35 -12.17 16 5 H 0.08 2.01 7.31 -52.49 -0.38 1.63 16 6 C 0.08 1.99 5.50 -17.29 -0.10 1.89 16 7 N -0.74 -20.26 11.94 55.56 0.66 -19.59 16 8 Si 0.92 18.45 29.56 -169.99 -5.03 13.42 16 9 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 10 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 12 N -0.33 -10.08 10.48 31.26 0.33 -9.76 16 13 N -0.28 -7.84 11.62 30.89 0.36 -7.48 16 14 C 0.05 1.09 8.09 -87.29 -0.71 0.39 16 15 S -0.06 -1.00 21.78 -107.50 -2.34 -3.34 16 16 C -0.08 -1.28 5.21 37.16 0.19 -1.09 16 17 C -0.07 -0.75 5.40 -27.88 -0.15 -0.90 16 18 C -0.03 -0.32 5.17 -104.31 -0.54 -0.86 16 19 C -0.17 -1.78 9.82 -39.44 -0.39 -2.17 16 20 C 0.10 1.07 11.18 -17.55 -0.20 0.87 16 21 N -0.49 -6.11 10.36 -13.25 -0.14 -6.25 16 22 C 0.10 1.07 11.18 -17.55 -0.20 0.87 16 23 C -0.17 -1.78 9.82 -39.44 -0.39 -2.16 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 1.33 7.54 -51.93 -0.39 0.94 16 26 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 27 H 0.28 6.93 8.30 -40.82 -0.34 6.60 16 28 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 29 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 30 H 0.09 0.84 8.10 -51.92 -0.42 0.42 16 31 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 32 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -34.07 322.97 -9.13 -43.21 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.12 Total: 2.07 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -3.33 Total: -4.29 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.81 Total: -55.93 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.34 Total: -3.34 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.07 -9.13 -43.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279967738.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.631 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds