Wall clock time and date at job start Tue Mar 31 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48500 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47035 * 300.00070 * 3 2 1 6 6 H 1.48494 * 109.47194 * 60.00079 * 3 2 1 7 7 C 1.39061 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00237 * 160.08630 * 7 2 1 9 9 N 1.36834 * 119.99888 * 340.07454 * 7 2 1 10 10 C 1.34776 * 119.99725 * 134.03343 * 9 7 2 11 11 O 1.21651 * 119.99737 * 186.00018 * 10 9 7 12 12 C 1.47352 * 120.00416 * 5.99343 * 10 9 7 13 13 C 1.39213 * 120.30755 * 325.37856 * 12 10 9 14 14 C 1.38658 * 120.33813 * 179.97438 * 13 12 10 15 15 F 1.35104 * 119.64109 * 180.02562 * 14 13 12 16 16 C 1.38163 * 120.71079 * 359.97438 * 14 13 12 17 17 C 1.38916 * 120.08664 * 0.04179 * 16 14 13 18 18 N 1.37311 * 134.84125 * 179.97438 * 17 16 14 19 19 H 0.97002 * 125.95171 * 359.97438 * 18 17 16 20 20 N 1.28828 * 108.10533 * 180.02562 * 18 17 16 21 21 N 1.28667 * 111.70336 * 0.02562 * 20 18 17 22 22 C 1.34485 * 109.28178 * 0.02562 * 21 20 18 23 23 C 1.46504 * 120.00374 * 314.03234 * 9 7 2 24 24 C 1.53007 * 117.49477 * 1.09800 * 23 9 7 25 25 C 1.53006 * 117.49588 * 292.47838 * 23 9 7 26 26 H 0.96999 * 120.00178 * 5.05839 * 1 2 3 27 27 H 1.07994 * 119.83046 * 0.25536 * 13 12 10 28 28 H 1.07995 * 119.96123 * 180.02562 * 16 14 13 29 29 H 1.08990 * 115.55025 * 146.80855 * 23 9 7 30 30 H 1.08996 * 117.49768 * 0.02562 * 24 23 9 31 31 H 1.09001 * 117.49493 * 145.02176 * 24 23 9 32 32 H 1.09000 * 117.49668 * 214.97575 * 25 23 9 33 33 H 1.08994 * 117.49567 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7075 1.3464 -0.0006 5 1 1.8887 2.3964 -1.2125 6 1 1.8888 2.3964 1.2125 7 6 2.0089 -1.2043 -0.0005 8 1 3.0404 -1.2322 -0.3191 9 7 1.3861 -2.3540 0.4028 10 6 1.5134 -3.4806 -0.3260 11 8 0.8740 -4.4721 -0.0296 12 6 2.4268 -3.5112 -1.4818 13 6 2.6004 -2.3771 -2.2703 14 6 3.4602 -2.4051 -3.3578 15 9 3.6185 -1.2961 -4.1131 16 6 4.1576 -3.5544 -3.6765 17 6 4.0020 -4.6997 -2.9060 18 7 4.5243 -5.9691 -2.9416 19 1 5.1619 -6.3045 -3.5912 20 7 4.0194 -6.6374 -1.9628 21 7 3.2009 -5.9245 -1.2719 22 6 3.1320 -4.6898 -1.8006 23 6 0.5811 -2.3605 1.6268 24 6 0.4545 -1.0438 2.3960 25 6 1.3157 -2.1775 2.9565 26 1 -0.4850 0.8367 -0.0741 27 1 2.0661 -1.4696 -2.0311 28 1 4.8245 -3.5625 -4.5260 29 1 -0.2841 -3.0232 1.6169 30 1 0.9697 -0.1729 1.9910 31 1 -0.4944 -0.8402 2.8921 32 1 0.9334 -2.7196 3.8214 33 1 2.3979 -2.0528 2.9204 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282201402.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:17 Heat of formation + Delta-G solvation = 87.512709 kcal Electronic energy + Delta-G solvation = -23130.372435 eV Core-core repulsion = 19495.896230 eV Total energy + Delta-G solvation = -3634.476206 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 10.56 seconds Orbital eigenvalues (eV) -48.73264 -42.94230 -39.13261 -37.03645 -35.99163 -33.55133 -33.23955 -31.73147 -30.12688 -29.67409 -25.42050 -24.37358 -23.03856 -22.84917 -21.34894 -21.00941 -19.61376 -18.38429 -18.15837 -16.99903 -16.51331 -16.09831 -15.81395 -15.26321 -15.16213 -14.89931 -14.49822 -13.89047 -13.65731 -13.36482 -13.03586 -12.70107 -12.20689 -11.87913 -11.74566 -11.54259 -11.40749 -11.19690 -10.97045 -10.84022 -10.63850 -10.44629 -10.41202 -9.80712 -9.35416 -8.88801 -8.59260 -8.51928 -8.06951 -7.41410 -6.54664 -4.27787 0.55189 1.40371 2.50523 2.62427 2.99074 3.12016 3.14835 3.40379 3.89858 4.07257 4.17701 4.34141 4.55654 4.71000 4.91509 5.11512 5.19912 5.21918 5.34420 5.65190 5.98617 6.06318 6.11955 6.15451 6.21838 6.33693 6.49972 6.57721 6.81847 6.94278 7.02263 7.03607 7.24357 7.29396 7.85746 8.18588 8.54883 8.84880 9.30372 9.76491 10.45207 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.007290 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.429718 B = 3840.073718 C = 5167.480961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.365 4.365 8 H 0.093 0.907 9 N -0.401 5.401 10 C 0.518 3.482 11 O -0.571 6.571 12 C 0.010 3.990 13 C -0.109 4.109 14 C 0.131 3.869 15 F -0.130 7.130 16 C -0.152 4.152 17 C 0.040 3.960 18 N -0.426 5.426 19 H 0.448 0.552 20 N -0.032 5.032 21 N -0.216 5.216 22 C 0.032 3.968 23 C 0.109 3.891 24 C -0.145 4.145 25 C -0.217 4.217 26 H 0.274 0.726 27 H 0.192 0.808 28 H 0.139 0.861 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.669 -1.133 -5.910 9.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.151 4.151 3 Si 0.723 3.277 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.492 4.492 8 H 0.111 0.889 9 N -0.117 5.117 10 C 0.306 3.694 11 O -0.455 6.455 12 C 0.002 3.998 13 C -0.130 4.130 14 C 0.108 3.892 15 F -0.109 7.109 16 C -0.175 4.175 17 C -0.080 4.080 18 N -0.153 5.153 19 H 0.294 0.706 20 N -0.013 5.013 21 N -0.092 5.092 22 C -0.094 4.094 23 C 0.004 3.996 24 C -0.182 4.182 25 C -0.256 4.256 26 H 0.085 0.915 27 H 0.209 0.791 28 H 0.157 0.843 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.039 -2.769 -4.894 9.009 hybrid contribution 1.007 1.909 -1.235 2.487 sum 8.047 -0.860 -6.129 10.152 Atomic orbital electron populations 1.70028 1.06134 1.28318 1.41944 1.25403 0.95138 0.99655 0.94916 0.86325 0.80671 0.82040 0.78627 1.18678 1.20072 1.19922 1.19426 0.96584 0.84914 1.48311 0.88945 1.42640 1.43063 1.08013 1.18023 1.17811 0.84206 0.84732 0.82634 1.90716 1.48285 1.35651 1.70797 1.19053 0.95202 0.89093 0.96463 1.22434 0.97449 1.01445 0.91699 1.17320 0.98260 0.82438 0.91229 1.91519 1.94335 1.50499 1.74497 1.19652 1.05434 0.89967 1.02470 1.19140 1.00459 0.88137 1.00263 1.44699 1.37021 1.07802 1.25816 0.70573 1.78040 1.06646 1.20710 0.95951 1.75412 1.11602 1.01628 1.20551 1.19667 1.00241 0.94129 0.95409 1.21144 0.95892 1.00445 0.82156 1.23188 0.99751 0.94015 1.01280 1.23380 0.99181 1.05239 0.97781 0.91535 0.79125 0.84301 0.87454 0.86988 0.90521 0.90174 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.93 11.34 55.50 0.63 -19.30 16 2 C 0.06 1.33 2.89 -17.45 -0.05 1.28 16 3 Si 0.90 17.65 29.19 -169.99 -4.96 12.69 16 4 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 7 C -0.36 -8.47 5.56 -15.01 -0.08 -8.55 16 8 H 0.09 2.09 6.56 -52.49 -0.34 1.75 16 9 N -0.40 -9.76 2.77 -108.96 -0.30 -10.07 16 10 C 0.52 12.93 7.37 -12.55 -0.09 12.84 16 11 O -0.57 -15.75 16.54 5.23 0.09 -15.67 16 12 C 0.01 0.21 5.52 -104.78 -0.58 -0.37 16 13 C -0.11 -2.07 7.80 -39.06 -0.30 -2.38 16 14 C 0.13 2.08 7.27 -39.45 -0.29 1.80 16 15 F -0.13 -1.99 17.25 2.25 0.04 -1.95 16 16 C -0.15 -2.07 10.03 -39.36 -0.39 -2.47 16 17 C 0.04 0.63 7.40 -84.24 -0.62 0.01 16 18 N -0.43 -5.57 7.08 32.31 0.23 -5.34 16 19 H 0.45 3.47 8.96 -190.22 -1.71 1.76 16 20 N -0.03 -0.54 13.29 60.35 0.80 0.26 16 21 N -0.22 -4.54 12.27 32.22 0.40 -4.14 16 22 C 0.03 0.64 6.94 -84.74 -0.59 0.06 16 23 C 0.11 2.53 5.62 -67.92 -0.38 2.15 16 24 C -0.14 -3.07 8.17 -26.72 -0.22 -3.29 16 25 C -0.22 -4.39 10.39 -26.72 -0.28 -4.67 16 26 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 27 H 0.19 3.93 5.44 -52.49 -0.29 3.64 16 28 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.11 2.59 7.78 -51.93 -0.40 2.19 16 30 H 0.11 2.52 4.53 -51.93 -0.24 2.28 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 33 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 290.07 15.07 4.37 4.37 Total: -1.00 -29.20 290.07 -6.39 -35.59 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -3.80 Total: 7.14 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -3.88 Total: -3.59 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 1.75 Total: -38.58 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.09 Total: -15.67 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -4.96 Total: 12.69 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.20 -6.39 -35.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282201402.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.105 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.56 seconds